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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0255500 |
| Transcript ID | LotjaGi6g1v0255500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56824820..56827993) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGCTGGGGTTTGGTCGGATGATAATAGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGG TAAAAATGGATTCTGTTTCTATGATCCTGTGTGTTGAAGTTGTTATGATTCTCATGAATCACTCTGTTTCTATGATTCTG TGTGTTGAAGTTGTTATGTTTGTTATGTAGAGCGTAGCCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGT TTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAACTTCAGGTTTGTACTTTTTCGCTTCCGCATTTATACTTGTTAAG GTGTAGTGTAGACTGTGGGGTAGTTGGAATTTTTTGTGTTGTTGATTAGTTATTTGTGTGACGTGTTGTTTGGTTAGTTT GAGGCTGCGTGGGCTCTCACCAACATTGCGTCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTACC GATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGCGAGCAGGTATATTGATACTGAAATGCAGTAGCGCGGG CATTTTTGAATTTTTGAGTTTTTGTTGAGCTCTCTTTAACTATGAAGCTTTGAAATTTAGGCGGTGTGGGCGTTGGGAAA TGTTGCTGGTGATTCTCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATG AGCATGCCAAACTTTCAATGCTGAGAAACGCCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTT GAACAGGTAGTTGTCGTTTTCGTTAATTTAAACCCAACGGGCCTCAGCCTCCACGTGGACCTTGTCGTTTTCGGTTAAAG GGCTTCTGTCTGTATATTTATATTAATACTAGAATATTTGATGGGCAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTT GGTTTTTTCCAATGATGAAGAGGTCCTGACTGACGCATGCTGGGCGCTATCTTATCTTTCCGATGGAACAAACGACAAAA TCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGATTGGTTCAGCTTCTTCTGTGAGTATTAATTCTACTCTACTCGCTC GACAAAGATTCTGTTATTTCAATTTTGGATTGCTTTGGCCCTAAACGTGTATCCATGTTTTGAAGGCACCCGTCTCCTTC CGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGACGATATGCAGACTCAGGTATTATTTGTGAACA GTTCTATTAATTGCTTGCTATCTTTTTATTCTCTTATTAAATATAAGGTTTTCTGTGTAAAACACTAAAAATTAGTGTTA TATAAGTATTTTTCGGAAAATTTTTTATTAAAAAATTTATATAACTTCACCCGAACTGTTGGTACTTGGTAGTTGGTAGG TTAGTTTTGCTTGTCTAATTTGATTAATTAGCTCAAGCACTGATGCTATAATTTGGGGCTAATGGAGCTTCATACCAAAT TCCAGAGTAACTACATAGGTCAGAAAAAAGTGAACAGTTAGTTATATTGATATTGTTAGTCATTATCCACAATGAAATTC ACCTACCTCTTTCATGGCTTTTACCACCTACATATGCCATTTATACCACAACTAATTATTACCAAGAATCAATAATTATT TTCCTTTGATGTTTTTGTGCTTGTGTCATTACTCATTAGTGGGAATTTCCTTATTTTCTGGAACTATTTTCATTAGGCTA TTATCAATCATGGTTCACTCCCGTGCCTTTTGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAAAGAAGCTTGC TGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGGTGCTTCACTGCTTTATAAAGAATTCATTTTTTAT TGTTTATGCTTTTCTTTTATTTTGATGTGGTAGTATATATGCTTGCATATTTTATTGAATTTCTCAATGGAGTTATTGAC CTTTTGAAGTTTATGAGTGTTCCAAGTTTCTTATTGACCTGATGACCTCTTATTGTGTTTTACTGTTGCTTTGGTCTTGT CATATGGATCGTTATGCTTTTTTAACTTGGAGATGTGGTGCAGTGTAATAATAACCGGCTTAAACATATTTAGTTCTCAG GTTAAACCGATTGGAGAAGATAAATTAGAGAATGATGATTGACACGTTCTCAACTCCATTCTATGTACAAAAACATAATG TATAGTGAATATACTGTGGTGTGCCAGTGATCTTTGGCATTGTGCTATCTCATAAGGATAATAATTGAGTATGAGTCGAA TGTAAGCCCTTGAAGTTTGACGCATCAACTGATTGACCGAATCTTATATTTTTGTTTCACATGACGAACATTTTTAAAAT TTGTTCCAAGTACATCATTGAAGGAAATCTTCTGTCTTGCTGGAAGCCATTGATGGTTATATTTTGTTTGGGATCGTGGC TATGTTTTATCAGAATTTTATTGCAAAACATAAGATTTTCTATGGGCTTATTTGTTGAAAAAGCTCTCTGAACTTTACAT TTTATGTATGCAGTCTGTTATTGAAGCGGGTCTGATTGCTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTA AAAAGGAAGCTGCTTGGGCAATTTCGAATGCTACATCTGGCGGTACCCATGAGCAGATCAAGTATGTGAATTTTTACTTT CAATTTTTTTTCACCCAGCTTCATAATGGTGATGTTGGGACTTGGGGGTTTATGTTATTAACTTGCTGTATGTCATTTAA GGTACTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTGTCCCGACCCAAGAATCGTTACTGTCTGT TTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAGGCTGACAAGAACTTGGGTAACTCTGGAGATGTCAACTTGTATGC TCAGTTGATAGATGAAGCTGAGGGATTGGAAAAGATTGAAAACCTGCAGAGCCATGACAACAATGAAATATATGAGAAGG CTGTTAAAATCCTCGAGACATATTGGTTGGAAGATGAAGATGAGACTTTGCCTCCAGGTGAAGGTGCTCAACCTGGGTTT AATTTTGGAACCAACGAGCTTCCAGTCCCATCCGGTGGATTCAACTTCAGTTGA
CDS sequence (LotjaGi6g1v0255500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCTGGGGTTTGGTCGGATGATAATAGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGA GCGTAGCCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCC CTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCGTCCGGGACTTCGGAGAACACTAAGGTGGTAATTGAT CATGGGGCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGCGAGCAGGCGGTGTGGGCGTTGGG AAATGTTGCTGGTGATTCTCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGA ATGAGCATGCCAAACTTTCAATGCTGAGAAACGCCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCA TTTGAACAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGACTGACGCATG CTGGGCGCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGATTGG TTCAGCTTCTTCTGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGACGAT ATGCAGACTCAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTTTGAGCCTGTTGACGCAAAATCATAAAAAAAGTAT CAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGTCTGTTATTGAAGCGGGTC TGATTGCTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATTTCGAATGCT ACATCTGGCGGTACCCATGAGCAGATCAAGTACTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTG TCCCGACCCAAGAATCGTTACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAGGCTGACAAGAACTTGG GTAACTCTGGAGATGTCAACTTGTATGCTCAGTTGATAGATGAAGCTGAGGGATTGGAAAAGATTGAAAACCTGCAGAGC CATGACAACAATGAAATATATGAGAAGGCTGTTAAAATCCTCGAGACATATTGGTTGGAAGATGAAGATGAGACTTTGCC TCCAGGTGAAGGTGCTCAACCTGGGTTTAATTTTGGAACCAACGAGCTTCCAGTCCCATCCGGTGGATTCAACTTCAGTT GA
Protein sequence (LotjaGi6g1v0255500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVID HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPP FEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDD MQTQAIINHGSLPCLLSLLTQNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNA TSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKNLGNSGDVNLYAQLIDEAEGLEKIENLQS HDNNEIYEKAVKILETYWLEDEDETLPPGEGAQPGFNFGTNELPVPSGGFNFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 452 | 452 | 7.1E-273 | – | |
| PANTHER | 1 | 452 | 452 | 7.1E-273 | – | |
| PIRSF | 1 | 452 | 452 | 8.5E-206 | ||
| Gene3D | 1 | 419 | 419 | 4.8E-220 | ||
| SUPERFAMILY | 3 | 424 | 422 | 5.38E-121 | ||
| SMART | 28 | 69 | 42 | 5.0E-9 | ||
| Pfam | 29 | 69 | 41 | 3.0E-10 | ||
| ProSiteProfiles | 39 | 82 | 44 | 10.482 | ||
| Pfam | 71 | 110 | 40 | 1.6E-13 | ||
| SMART | 71 | 111 | 41 | 2.7E-11 | ||
| ProSiteProfiles | 82 | 124 | 43 | 12.127 | ||
| SMART | 112 | 154 | 43 | 0.043 | ||
| Pfam | 113 | 154 | 42 | 7.1E-9 | ||
| SMART | 156 | 195 | 40 | 0.038 | ||
| ProSiteProfiles | 166 | 208 | 43 | 8.592 | ||
| Pfam | 167 | 195 | 29 | 1.2E-6 | ||
| SMART | 197 | 237 | 41 | 3.9E-6 | ||
| Pfam | 198 | 236 | 39 | 8.5E-9 | ||
| SMART | 239 | 280 | 42 | 9.4E-9 | ||
| Pfam | 240 | 280 | 41 | 2.3E-10 | ||
| ProSiteProfiles | 250 | 293 | 44 | 9.922 | ||
| Pfam | 282 | 321 | 40 | 1.5E-11 | ||
| SMART | 282 | 322 | 41 | 4.9E-9 | ||
| ProSiteProfiles | 293 | 321 | 29 | 9.152 | ||
| SMART | 325 | 365 | 41 | 2.8E-6 | ||
| Pfam | 326 | 363 | 38 | 2.4E-7 | ||
| Pfam | 380 | 424 | 45 | 4.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi6g1v0255500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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