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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0256100 |
| Transcript ID | LotjaGi6g1v0256100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta xylosidase; TAIR: AT5G49360.1 beta-xylosidase 1; Swiss-Prot: sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1; TrEMBL-Plants: tr|A0A1J7FUN8|A0A1J7FUN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0256100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56892082..56898020) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTCACTTCCCCTTCATCCATTCAAATTATTCACCAAAATGTCTATTGATTGTTGCAATGGCAAAAAGTGCTTATGGG CTTTTGGGCTAGTGACATGTTTGGTTGCCATGTTAATAGGGGCAGGGGAAGCAAGGGTGCCATTTGCGTGTGACCCCCAA AAAGGGTTAACAAGGGGGTTCAAGTTTTGCAGAACAAACGTGCCAATCCATGTTAGGGTGCAGGACCTCATAGGGAGGCT CACATTGGCGGAGAAGATAAGACTGGTGGTGAACAATGCCATTGAGGTGCCACGGCTCGGAATTCAAGGCTATGAGTGGT GGTCGGAGGCGTTGCACGGCGTTTCTAATGTGGGGCCAGGGACTAAGTTCGGTGGGGCCTTCCCCGCCGCCACCAGCTTC CCTCAGGTTATCACCACCGCTGCTTCATTCAATCAGTCGCTGTGGAAAGAAATTGGACGGGTGAGATTAATTAATTCATT AATTATTGTTGTTCTTGCTTTTTCATCCATTGGTTTCATATAGATGATAAATTATTTAAATAATTGAGAGGTGATTCTTT GGTTCTCCTTTTTGGGCGTTCTTGATGATAGTAATAATAAACTAATCATATATCTACTCACGATGGATGCATCATATTCA TAGCATATTATATGTGTTGCCTTTGGCATCCAGAATGGGTAAATAGCTTTTATAACAAGAGGCTAAATTCAAGTACATGC ACTACTTACCTTTCACTTTCATTCATGTATGTTTCTTTCATATGTTTGAAATATCCTAGAATTTTATCATATAAGATAAA GATCAAAACCACATTTCTTAGCTCTCACGACACTCGCGACACTTTATGTTTAACATAGTTTCTGACACATACAAATTGCA TAGTTTGTTAAAAAAAAATTATACGATTCGTAGCGATCAGAAACCGTTATAAGTTGTAAGTGTTACAGGTGCATGTCATC AGAAATAGAAATTTAGTATATATCAATTATAACTATTTTATTATATAAAAATTATTTTATTTATCTTTTATTCATATATA TATTGAACATCTGGAATCATATTATAAATTACGAATGAAAATCAATCTTTCTAGCTATAATAAATTAAATGAAATATATA TTTACATGAAACTGTCAATTTTCATTTTAATTAATGAAACTGTTTATATCCATGAAAATAATTTAATTTCTTGTCCTCAA TTTTGATTAGTTTTAATCTTTAAACAATGTATAACCACTGTTTGTGTTTGACTCACTGATAATATATGAGCTGACAATAA AAAAAATGAAAAGGTGTCTAGACATGGGCCTCAAGTTTTTATTTATAATTACCAAAACATCTGAATGACGACGAGAATTT GTTTTTGTAAACAATAAATAACAATCAAACTATCAATTATTTGTATTTAATTATCGTCCAATCATGTGAGCTGAAATTAA TGATTCATTTTATTTGTCGCTGAACACTGGCGGAAGCACAGGGGTGACTTCCCTGTGCTTAGTCACCCCTGGCTTCTTGA AATTTCTAAAGAATTTTTTTAAGCAAAGCATTTAAAGGTAACTAGGCAAGAAGCAGAGAGAGTAACAGTGTGTGACAGTG TGAGCACCACTGTTTACACACACAGCACCGGCAGCTCCTCTTTTTATTTTATTTTTCTTTTAATAATCACATGGAATGGG ACCCACACATCCAAAGTTATAATATTTGAAAAACATAACATTAAGATAGTAGTGAAGCCGTGTTTTTCTAATGGAAGGAA ACAGAAGCAGGAGAAATGAAAAAACAAGGCAAAGAGAAGAAAACTTATTGCCTTGTTTGGATTTGTTTAATTAAAGAAAC AGCACAAAGAAAAAGAACGAGATTTTGCTTAGCTAGTACAATATTTTAGAACCTCTCAATTTTCTCTCTTACTCTTCACT TTCTCATGTATGACTTTTTATGGATATTCAAATTTTCATGAGTTCAAACTAGAATTTATTGGTTCAATTCTCATTTTTGT TGCTTAATTGGTCTCATTATATGAGATTGAATTTGTGGTGTTTGTGTTTTGTGAAAAAAAAGTGATAAAAATTATGCACA TCTACTGTTTGTAAAAAGTCTCCTATAAGATTCAGTGGACTTTTGTGTTGATAATTTTTTGGTGCGGAAGAGATATTTTG TGGTTCTTCTCTTCAATTATCTACAAGATAGTCTTTTTTGTTCTCACCAGAATACTTATCAGCCGGTTAGTATCTCTTGC ACCCAAACTAATATGATATTTCTTATGCTTATATAAAATATCTCTTGCATTCAAACTAATTTTTTGTTCTCACTAATTTT TTTTTTCGCTTACCCAATTTTGGCAATTTTTATTTGATAAAAATTGAAATTTTCTTACAAAGATCTCAGTCCCCCCTTCT GAAATTCCTGGCTCCGCCCCTGGCTGAACATAAAAATAAAAAAGAGGAGAGAAAAATATGGTTGTTGTACCTGGCTACTT GTCACTTATTTTGTCTGTTAACATAGAAATTAAGTGGCAAAGTGTGTCCCATGTGCCATGCATGCATTAATTGGAATATA TTTATGAATAATGTCAATCAAGTCATTTTATATGTTTAGAAAATGGAAATTGAGGATGGTACGTAGTGTTGAAAATTCAT CATAAACATGTTGATTGATTCGTCAGCTACAAGTGGCTAAAACAAAGTCCCTCACGCCATTATTTCATTAACTACGAAAG CAACTCATCTAGATATATGGTGGTTTTGTTTGGTTAATTGTCAATATTGTAGCACTTTCCACTAAGGTTTAATCACTCTC CACGTCATTAATTAATTATGTATGTATTAAGATTGGAATATTAATTAACTAAGCTTTCGGTGGCATCAATACATCCTTTC ATTTCTTAAATTGTTATCTTCGGTTAATTAAATATAGGAATTAAGCAATTATAGGCTATGTTTCCATATCATATATTAAT TGTGGTTAGTAAAGCATAAAAACTAATCAACCAAATTTGTATGTTTGATGTTGTTCAGTGAAGTAAAAAAGAGTCTATCA TCTTTTCAATCTTTTCTTGATTATTGTTTAGTGAATAATTGAACAAGCACTAGGTGTTTGATGTTGCCCCCACCAAACAC CTCTACTTGCAAATGTCCTTCCTCTCACGGCTTCTTTTTTTCTTTTTTTTTTCTTTTTCAGTCCATGCATGCATGTATAT ACGTTAAATATTGAAAAGGAAAAATCCCTAAATTAAATATTTATTGGAAGATATTAATCAATTAGTTAGACTTCGTGAGG TTTGGATCCCAGAAAATGCATGTCAACATTAATGGAGTGTTCTGTTTGTTTCTTAGTGCTAAAAGTTATTCTTTTATTCC GGTTGGTAGTTTAACCAAATGACGTAGCTAGAGGTGAAAGGAAAAAATGACTATGTTGATGAAAGAGAACAATTCTGAGT TTAATAGGGTATCCGCAATTAAAAATACAATAGAGTCCATTTTGAAATTACATTTATATATTTACTTGCAGGTGGTGTCT GATGAGGCAAGAGCTATGTACAATGGTGGAGCAGCAGGATTGACGTATTGGAGCCCGAATGTGAACATTTTCCGTGACCC CCGGTGGGGCCGTGGCCAGGAAACTCCCGGTGAGGACCCAACCTTAGCTGCGAAATACGCCGCTAGCTATGTCCAGGGAC TCCAAGGTGATGGTGCCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAGCACTACACTGCCTATGACCTTGATAACTGG AATGGTGTGGACAGGTTTCATTTCAATGCCAGGGTATGTATGTATGGGCCAAATATTTTTATCTCTCATAGCTAGCTATA TGGGACCATTTATTTTCTTGATTTAATACAGAAATTATATTTATTTTTATCAAATTTTATTTCATACACCTAATTGATTG AGCTATAATCCGAAGTGGTATAGGCTGTCAGTTGGTAAAATCATTGCTGGAACTTTTCATGTGGCTTGTTGCTCGGTGAC TTAAGCTGCGTGGACATACAAGTCATCTAATGCCTTGTGTGGATTTCTTTCTTGCTTTTGTCATTCTCTTTCCTTTGGAT CAAATTAGTAGTTTCCATAAATGCAAGAAGTGATGTAGCAAGTTGTTGATAAAGACTTGTTACCACTTGCAATTGGTTAG GATAAGAGAAAAAGATGCCATCCAAACTACCAATTCGATCAGCTACCACTCATGCACCATATACTAAATTAAAACCATTT ATTTTCCTTTGCCATTATTATTTTTTGTGTCCTATATCGATGTGACCTTGATGGAAAAGTAGGAATATAATCCATCCAAA AAAATGAAAATGTTTTTCCCTTTGTTTTTTTGCATTTAAGAATATGGATAAAGCAAAGACTCAAAGGCCCATGGGCTGAA ACTAAAAATATTTGGGCTTTTGGGTTGTAACAGGTTAGCAAGCAGGACTTGGAGGACACATATAATGTACCATTCAAAGC CTGTGTGATGGAAGGCAAAGTAGCAAGTGTGATGTGCTCTTACAATCAGGTGAATGGAAAGCCTACATGTGCTGATTCTG ATCTTCTTCGCAACACAATCCGTGGCCAGTGGCGTCTTAATGGGTAAAGCCCATTATGATAACTATGCATTTTCCTTCAT TATTATTTGTGTTTTTTTTATTTCATTTTTCACTAGCTAACATGGTGGCTTCTTTCTTATCTTATAAAATAGGTACATAG TCTCAGACTGTGACTCTGTTGGAGTATTCTATGACAACCAACACTACACCAGAACACCTGAAGAAGCAGCTGCAGAAGCA ATTAAAGCTGGGCTGGATCTTGATTGCGGCCCATTCTTGGCCCTCCACACTGATGCAGCCATTAAGAATGGGCTCATTAC AGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTACTGTCCAGATGAGATTGGGCATGTTCGACGGCGAGCCATCGG CCCATCCATACGGGAACTTGGGCCCGAGAGATGTCTGCACCCCGGCCCATAACGAACTTGCCCTTGAAGCAGCTAGGCAG GGCATAGTTCTGCTAGAAAACAAAGGAAATGCCCTGCCATTATCCCCTACTCGACACCGCACTGTAGGAGTCATTGGACC TAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTTAGTTATTTAGTAACCCAATTCATCATCATATCATAT ATATGTGAATATATCATGTTCATAGTTTATTTATATTGTACATTTTGTTTTGTTTTAGGTGTGGCATGTGGTTATACTAC ACCATTGCAAGGGATTGCTAGATATGTGAAGACCATTCATCAAGCAGGATGCAGGGACGTCAGTTGCCGCGGAACCGAAC TATTTGGAAACGCAGAAATTGTGGCTAGGCAGTCTGATGCCACAGTGGTAGTGGTGGGCCTTGACCAGTCCATAGAAGCT GAGTTCAGAGACAGGGTTGGGCTTCTATTACCAGGCCACCAACAAGAGCTCGTGTCTAGAGTGGCCCGGGCCGCAAGAGG CCCGGTTGTGCTGGTCATCATGTCTGGTGGGCCTGTTGATGTCCAATTTGCTAAAGATGATCCTAAGATCAGTGCCATTT TGTGGGTTGGTTACCCTGGCCAAGCTGGAGGAACTGCCATTGCAGATGTGATTTTTGGTAGAACAAACCCTGGTAAAGTA CTCACACACTAGTATTATTAAATCATGAAAAACAGACAGACACTTCAAATGTTGTTACATGTGATCTAATTTATGTTTTT GGTTGGGCTTTTCTTGTAGGAGGAAGGCTACCCAACACATGGTACCCTCAGTCCTATGTGGCTAAACTACCCATGACAAA CATGGACATGCGACCAAACCCAGCATCAGGGTACCCAGGAAGGACCTACAGATTCTACAAGGGCCCAGTGGTGTTCCCAT TTGGGCATGGACTGAGCTA
CDS sequence (LotjaGi6g1v0256100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATTGATTGTTGCAATGGCAAAAAGTGCTTATGGGCTTTTGGGCTAGTGACATGTTTGGTTGCCATGTTAATAGG GGCAGGGGAAGCAAGGGTGCCATTTGCGTGTGACCCCCAAAAAGGGTTAACAAGGGGGTTCAAGTTTTGCAGAACAAACG TGCCAATCCATGTTAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGAAGATAAGACTGGTGGTGAACAATGCC ATTGAGGTGCCACGGCTCGGAATTCAAGGCTATGAGTGGTGGTCGGAGGCGTTGCACGGCGTTTCTAATGTGGGGCCAGG GACTAAGTTCGGTGGGGCCTTCCCCGCCGCCACCAGCTTCCCTCAGGTTATCACCACCGCTGCTTCATTCAATCAGTCGC TGTGGAAAGAAATTGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGTGGAGCAGCAGGATTGACGTATTGG AGCCCGAATGTGAACATTTTCCGTGACCCCCGGTGGGGCCGTGGCCAGGAAACTCCCGGTGAGGACCCAACCTTAGCTGC GAAATACGCCGCTAGCTATGTCCAGGGACTCCAAGGTGATGGTGCCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAGC ACTACACTGCCTATGACCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAATGCCAGGGTTAGCAAGCAGGACTTG GAGGACACATATAATGTACCATTCAAAGCCTGTGTGATGGAAGGCAAAGTAGCAAGTGTGATGTGCTCTTACAATCAGGT GAATGGAAAGCCTACATGTGCTGATTCTGATCTTCTTCGCAACACAATCCGTGGCCAGTGGCGTCTTAATGGGTACATAG TCTCAGACTGTGACTCTGTTGGAGTATTCTATGACAACCAACACTACACCAGAACACCTGAAGAAGCAGCTGCAGAAGCA ATTAAAGCTGGGCTGGATCTTGATTGCGGCCCATTCTTGGCCCTCCACACTGATGCAGCCATTAAGAATGGGCTCATTAC AGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTACTGTCCAGATGAGATTGGGCATGTTCGACGGCGAGCCATCGG CCCATCCATACGGGAACTTGGGCCCGAGAGATGTCTGCACCCCGGCCCATAACGAACTTGCCCTTGAAGCAGCTAGGCAG GGCATAGTTCTGCTAGAAAACAAAGGAAATGCCCTGCCATTATCCCCTACTCGACACCGCACTGTAGGAGTCATTGGACC TAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTGTGGCATGTGGTTATACTACACCATTGCAAGGGATTG CTAGATATGTGAAGACCATTCATCAAGCAGGATGCAGGGACGTCAGTTGCCGCGGAACCGAACTATTTGGAAACGCAGAA ATTGTGGCTAGGCAGTCTGATGCCACAGTGGTAGTGGTGGGCCTTGACCAGTCCATAGAAGCTGAGTTCAGAGACAGGGT TGGGCTTCTATTACCAGGCCACCAACAAGAGCTCGTGTCTAGAGTGGCCCGGGCCGCAAGAGGCCCGGTTGTGCTGGTCA TCATGTCTGGTGGGCCTGTTGATGTCCAATTTGCTAAAGATGATCCTAAGATCAGTGCCATTTTGTGGGTTGGTTACCCT GGCCAAGCTGGAGGAACTGCCATTGCAGATGTGATTTTTGGTAGAACAAACCCTGGTAAAGTACTCACACACTAG
Protein sequence (LotjaGi6g1v0256100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIDCCNGKKCLWAFGLVTCLVAMLIGAGEARVPFACDPQKGLTRGFKFCRTNVPIHVRVQDLIGRLTLAEKIRLVVNNA IEVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPAATSFPQVITTAASFNQSLWKEIGRVVSDEARAMYNGGAAGLTYW SPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARVSKQDL EDTYNVPFKACVMEGKVASVMCSYNQVNGKPTCADSDLLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEA IKAGLDLDCGPFLALHTDAAIKNGLITENDLNLALANLITVQMRLGMFDGEPSAHPYGNLGPRDVCTPAHNELALEAARQ GIVLLENKGNALPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVKTIHQAGCRDVSCRGTELFGNAE IVARQSDATVVVVGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVVLVIMSGGPVDVQFAKDDPKISAILWVGYP GQAGGTAIADVIFGRTNPGKVLTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| TMHMM | 12 | 29 | 18 | - | – | |
| PANTHER | 16 | 581 | 566 | 0.0 | – | |
| PANTHER | 16 | 581 | 566 | 0.0 | – | |
| Phobius | 23 | 31 | 9 | - | – | |
| Phobius | 32 | 584 | 553 | - | – | |
| SUPERFAMILY | 48 | 401 | 354 | 2.21E-90 | ||
| Gene3D | 57 | 377 | 321 | 1.3E-88 | ||
| Pfam | 115 | 360 | 246 | 2.1E-39 | ||
| PRINTS | 120 | 139 | 20 | 1.6E-6 | ||
| PRINTS | 208 | 224 | 17 | 1.6E-6 | ||
| PRINTS | 282 | 300 | 19 | 1.6E-6 | ||
| Gene3D | 387 | 583 | 197 | 1.5E-48 | ||
| Pfam | 402 | 579 | 178 | 1.1E-41 | ||
| SUPERFAMILY | 402 | 579 | 178 | 8.11E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0256100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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