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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0258200 |
| Transcript ID | LotjaGi6g1v0258200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme, E2; TAIR: AT3G17000.1 ubiquitin-conjugating enzyme 32; Swiss-Prot: sp|Q9LSP7|UBC32_ARATH Ubiquitin-conjugating enzyme E2 32; TrEMBL-Plants: tr|I1MGF5|I1MGF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0258200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57098587..57103185) extracted from Lotus japonicus Gifu genome v1.2.
GACCAATGCAAGGGCTAAACATGTTTCAACAACATTCAACATCAGTTTCAACAGACCATTGTACATGGTCTAATGGAAAA CCAAATGAGACTCTATGAAGGTTCATGATCCTCTCCAACAAAAAATGGACACGTAAGATCACAGCACCACGTGTCGCTTC CAGAGTCCACGTCCGTCTCCTCTTAACAAACTCGTAGCTGTGCCTCTCTGACTCTGTGCTGTGCCATTTCCCTTCGTCGA CGACGTTCGCTGCGACGACGGTTTTCCGACATCCACCGGCAGAGACGGCAGCGGCCGTGGCGGTTTAGCTCGCGCAATGG CGGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCAGTCTAACCCTTCCGAT GATTTCATGAGCCTCCCTCTCGAGGTTTTTTCTTCGGATTTTAAGATCTCTGATTATTTTTGTGCTTCGATTTCACTATG CGTTTTACAATATTGTGATGTTGTGATTTGTTATGGTGCGTGGCGAATTATTGATTGTTTTGAGTTTTGTGTCTTGTTGA TTTGATCCTTGGCATGGGATGGGGTATTTGGAAATGAATTCATAGATTGAGCTTGTTGATGGCATGAATTCATAGATTGT TATTTTTATTCATAAATTGAATCCTTGTATAAGCTGATTAGTTTATTCAACATGATACGCTTCTATGACTGTTATCTGTT ATGTGATTTGACTGTATAATCTGTAACTTGTTACTGATTTGAAACTTGGGATTTAATTACTGAGTATCAATTTGTATTTT CAACCTATATAAGTTTTTGCTGAGTAAATTCATCATGTTTGTTTTCAGGAGAATATATTTGAATGGCAATTTGCGATTAG AGGGCCGCGTGATACTGAATTTGAAGGTGGTATTTATCACGGACGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCC CTTCATTCACTCTCTTGACTGTAAGATAATGCTCCATCTTATGTTGTATGGACTTCATTTGCTTCTACCAAAATCTGTGG ACTCTCTCATTTTAGTAGGGACTGACATCGAATTTTCCTAGTAATATTGATCAATGAGTGTGTAAAAGCTTTTTATTTTT TACTTTTTCATGTTGAAACCCTGACACGTAAAGCTCAATTACTATATACTTATAAAAGTTTCATTGTTATGCTGTCAGCC TAATGGTCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCACCACCCTGAGCATTGGCAACCATCATGGA GCGGTAAATAATGTTCCTTTCCAGTCTTCGCTCACTGCATTTTCTGGGCTACTTTGCATATTATGTCTTCTGCATGGCTC AATTTGCTATTTGTACATGTCATAGATGCCATGCATTACCTATCTAGTATATATAGATACATACAAGAGTACTGCATTAT TTGGATTGGCTTCTAGCTTATGGGAACTTTTCCTTTGAGGAAAAAGCCTTCATAAGAGTTTATGGAGAATTTATGTGAGG GATATTCTAAAACAATTGAGGTGTAGAAATTGATTTTAACTTAGAAGCTCTTATTCATTACATGGTTATTTCAACTTCTT TTTTTCTTTAAGTGCTTATTGAGAAGTTTATTAAATTTTCTCTATAATTATTTTGTATTGAAACTGCTGTTGCTTTGTAG TTGTAAGACTGCCTGAAATATTTGCCTGTGGTCTTTATAGCTTCCCATTATTTTTTGTTTCTAAACAGGATTGCACTATG CTTAGGTAACGTGACCCTCTCTAGATAGGGGTATTGTTTCTTAGTTTGTTAGGTTGGTTGTAGTATCTCATACTCTTACC ATACTAAACGATAGGGGATATTTTAACCAGAAAGCTCTGATCAACTAAGTAATTTGTGTTTTAGTGAATTTGTAGAACTG GAATTGTAATCTGACATCACAGACCATGTCCTATAGATGCCTTTGATGACAAAAGGTTCTAACTTCATTAGTGTAAAATT CTTGTCAGTAAGGACTGCTCTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCGTTGGGCTCATTAGACT ACAAGAAAGAAGAGAGGCGTACCTTGGCCATCAAATCTCGTGATGCATCACCAAAATTCGGGACTCCCGAACGTCAAAAG CTGATTGATGAGGTAAATTGTTGCTTATCATTTGTTTCATCCGTACGTGTTTTCTGAAATACATTGTCCTGATTATACTT TGTTGTCCCAGATACATGAGTATATGCTAAGCAAGGCGCCTCCTGTTCCTCCTCAACTTAACCCCACACAAGCTCCTGAA GAGCACCCTAAAGATGAGGAAGCTGAGGTCCAGGTTAATTCACCTAACCCTGAGGCTTTACCTGCGGCCGAGGGGATTCC AGATCAAGCTGGTGATGGAATTGTAGAAGAACAAGACGCCCCTGCAACTGCAAATGCTAATACTGCAGGAGTTGAAGCTT CTAGCGAGATTCAATCAAGTAGTGTTTCAAGGACTCAGGTGCTCCAAAACTCAGAGACAAGGGTTCAAAATCCAAAGCCT CAGACGAGGGTCCAGAAACCTGATGATCGTTTGTTTACATGGGCAGCTATTGGACTTACTATAGCAATTGTGGTCCTCTT GTTGAAGAAGTTAATTAAATCCACTGAACATGGTGCAGTGTTCTTCGATGGATCTTAGATGTTTCTTTGCTCATGTTGCT TCAGAGGTAAAACATTTTATCCTTATGCAGTGAAAAGAAATGTAAAGCTCTTATAAACTGAAAGAAGTATACTTGTAATT TTTTTGTCCTTTTATTACACACTCTTTGTAATTAAGGTAATACTAATGTGCTACAGCTATGAATTGGTGAGGATCTCCTA TATTTCTCCAGTCTCCACTATATTTTGTTGAACAATTTTAAAAGTTATGACATAGTATGTCCGAGAAATTAATTTGCTTG AGACAATTTTCTTAAATAAATGTACAACATTAAATCCTTAGATTTACTCGTAAATCATGACACATACATTCCATTGTTAT CACATCACAATAATCATTTCCAAAAATTATAAGGAGTTATACAAGTTCTTGTTTTGACATAAAAAATCACTTCTATACAA CATGAAGATGATATTACACTTTGACTAATCCACTCCCATTAGGGGATGAAAACATGATTTAAAAACAATATCTAGCAAAA GGGGGAAATGCATATATACATTTCACACTCTCATAGGAGTTCATACCCTAATCAAGAAACTAGCTTAGTATTTTCTTACA CGATACTATATTATACATACATATATTAATTCTCAATGCCCAACTTGGATAGAGCGTGCACACGCTTATTAATGGTGAAT CAAAGAAGTGAGGGAAAGACAATTGTTGACCATGATGCTAACTAAACCATGGCTTTTCGACTTGATCGGGGATGATTTAA GATCCTCAAACTGGCTTTCACACGTTGAAACGTCCGCCATGACACCACTAAGAATCATATTAACTTTACCAAAATCATGA GATGAGACGGCATGCATTGCTTTCCTAAGATTCTTCAAAACATTATGGTATTTTTCCTTGCAATCACCGAGCGCGTCAGC AAGCTCCGGCGATTTCGCGGAATGTTTTGCCACCTTGCTCATAGTCAACTTTACTTGGAAAGAACATGCCTTTATGGAAG CTTCAAGGACACTAACAACATCAATCTTGGTTTTGTGGTTTAACAAATGTGGAATGGTAGCAAGGCAAATGCCAGGGTAG TGTGTGCGGGAACATATTTGTTGCAATGCAGTATTTTTATTGTTTTTGTTGTGTTTCTTGTCTGATTTGTGGTCATGGTC AAGGTCTCCTTTCAGGATGTCTGAGAAAGCATCGGAGAATGATGAAGAATGGCCAGAATTGTCTTCTCCTGATGATGGAT TTTGGGCTTGGGGTGCTCCAGAAGGAGGGAAGGAAATTGGTTTCTCTACATGGCTTGCCTTTGGAGAATGAGCATGGTGG CTTGCCTTTGGAGGATGAGCATGGTGGCTTGCCTTTGGAGGTTGAGCATGGTGGCTTGCCTTTGGAGGATGAGCATGGTG GCTTGCCTTTGGAGGTTGAGCATGGTGGCTTGCCTTTGGAGGTTGAGCATGGTGGCTTGCCTTTGGAGGATGAGCATGGT GGCTTGCCTTTGGAGGATGAGCATGGTGGCTTTCCTTTGGAGGATGAGCATGGTGAGAATTAGCTGACTTTGTTTCAATT TTGGGTGATGTGTCATTGATTTGGTGAGCTCCACATTTATCTATGGTAAAGCATATGAGGATTATTGTGGATAACAGTGA GAGGTTAATGAAAGGAATTTGATTGTTGTTGTTTTTGTTGAGCTTCATTATTTCTTGAAGGTTGGTAGATTGATAGAGGC TAGACAAGAGGAAAATTGGCTTAGGATTTGAGAATATGGAGGGGTATTTATCTTGTCAGTGAAAATGGTTTGATGAATTG TCCATGAAAATAGGTTGCCATCAGTAATAGTATCAATTCTTTTGTTTCAGGATTGTTTTACGGAGTGAATTTAGGGGTGA GAATGATTTCCCTCATGTTGGAAGAACAATTAACCTCTC
CDS sequence (LotjaGi6g1v0258200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCAGTCTAACCCTTC CGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCGATTAGAGGGCCGCGTGATACTGAAT TTGAAGGTGGTATTTATCACGGACGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTCACTCTCTTGACT CCTAATGGTCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCACCACCCTGAGCATTGGCAACCATCATG GAGCGTAAGGACTGCTCTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCGTTGGGCTCATTAGACTACA AGAAAGAAGAGAGGCGTACCTTGGCCATCAAATCTCGTGATGCATCACCAAAATTCGGGACTCCCGAACGTCAAAAGCTG ATTGATGAGATACATGAGTATATGCTAAGCAAGGCGCCTCCTGTTCCTCCTCAACTTAACCCCACACAAGCTCCTGAAGA GCACCCTAAAGATGAGGAAGCTGAGGTCCAGGTTAATTCACCTAACCCTGAGGCTTTACCTGCGGCCGAGGGGATTCCAG ATCAAGCTGGTGATGGAATTGTAGAAGAACAAGACGCCCCTGCAACTGCAAATGCTAATACTGCAGGAGTTGAAGCTTCT AGCGAGATTCAATCAAGTAGTGTTTCAAGGACTCAGGTGCTCCAAAACTCAGAGACAAGGGTTCAAAATCCAAAGCCTCA GACGAGGGTCCAGAAACCTGATGATCGTTTGTTTACATGGGCAGCTATTGGACTTACTATAGCAATTGTGGTCCTCTTGT TGAAGAAGTTAATTAAATCCACTGAACATGGTGCAGTGTTCTTCGATGGATCTTAG
Protein sequence (LotjaGi6g1v0258200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFTLLT PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSRDASPKFGTPERQKL IDEIHEYMLSKAPPVPPQLNPTQAPEEHPKDEEAEVQVNSPNPEALPAAEGIPDQAGDGIVEEQDAPATANANTAGVEAS SEIQSSSVSRTQVLQNSETRVQNPKPQTRVQKPDDRLFTWAAIGLTIAIVVLLLKKLIKSTEHGAVFFDGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 276 | 276 | - | – | |
| Gene3D | 2 | 173 | 172 | 1.7E-59 | ||
| PANTHER | 8 | 217 | 210 | 2.3E-109 | – | |
| PANTHER | 8 | 217 | 210 | 2.3E-109 | – | |
| SUPERFAMILY | 11 | 133 | 123 | 3.02E-38 | ||
| CDD | 12 | 127 | 116 | 1.81708E-44 | ||
| ProSiteProfiles | 13 | 125 | 113 | 24.311 | ||
| SMART | 13 | 173 | 161 | 3.6E-31 | – | |
| Pfam | 14 | 125 | 112 | 4.3E-21 | ||
| MobiDBLite | 171 | 204 | 34 | - | – | |
| MobiDBLite | 227 | 268 | 42 | - | – | |
| MobiDBLite | 227 | 270 | 44 | - | – | |
| Phobius | 277 | 294 | 18 | - | – | |
| TMHMM | 277 | 294 | 18 | - | – | |
| Phobius | 295 | 311 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0258200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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