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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0262600 |
| Transcript ID | LotjaGi6g1v0262600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S1; TAIR: AT5G30510.1 ribosomal protein S1; Swiss-Prot: sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic; TrEMBL-Plants: tr|A0A1J7FV06|A0A1J7FV06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0262600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57578945..57582623) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGGTAAGGTCTGGTAATAACTTATCCGTTTTTAGATAAATGCAAAAGTTCTTTTACATAATCTCAAAGCTTCCTTTT ATCGGGTAAATACCAGAAGTATTAATTTCTAGGCTAACTGGCCTAGTTAGGCTTTGCCACGCTCGACCCAACTCTCATAC ACACTAGTGAACGCCCTATGGCGGTCGCATATACCACTTTAGTTGATCTCGTTCCGTCGCCCTTGGCTTGGGAGCTTTTC TTCCGCTTAAGCGCCCTGGGCAGGACCTCTTTGGGGTGGAGGTCTCGCCAAGTCCAATAATGACAAGTAAATTCATTTAC CAAACTGTCACATGAAGACAGTAAATTTTAAACAAAACTACTCCTTTTTTTAGCTTCATAGTTCATCCTAAACAAAATAA AATTGGTTGTGTTGTGTCTTATTTCTGATTACCTTATCTGAACAGGGTACTGAGAAAGGGGAAAGATGGCAATGGCATCT GTGGCTCAGCAATTGAGTGCTGTTCGGTGGTCTCCAATGCTATGGAGGCGGAGCCAGAAGCAGAGGCGCGGTGCTGGTAC CATCGTCTGTTCGGTTGCAATCTCGAACGCACAGAACAAAGAGAGAGCCAAGCTCAAACAGCTCTTTGAAGATGCTTACG AGAGGTGCCGCACTGCTCCTACAGATGGTGTTTCCTTCACCCTCGAGCAGTTCACTACCGCTCTCGAGAAGTATGACTTC GATGCTGAGATTGGGACCAAGGCATGTTTTCAACTTGATCGCTGTACCTGGTTGTTTTCACGGATTTTTCTGTTGGGTTG TTGTGATTTTCTGTTTAGATATTGATTTTGTTAAAATTTCAGAGGTTTTTTAGTTGAAGATGAAAAGGGTTGTTGTCAAA TTGGTTTTTTTAGCTGTGTATGGATGGATAATTCATGTTGCTGCCTCTACTTAGTGGGAATGGGGAAAGGGCTTTGATTG TTGTTTTTGTTGTGTGTGTGTGTGGATGAGAGTGTTTGCTTACCTAATTTGTCTGTGGCAATTTGTTAGTTGTTTGTGTT TGATGAAAACAAACAAGGTGCTTGTAGCATGGACATTTTGCATTTTGCTCTTTATTTTGGGGATGGTTGTTAGTGGTAAT TTGAATGGGTCAGTGGTGTTTCAGGTTAAGGGCACTGTGTTTGGTACTGATGCCAGTGGAGCTTATGTTGATATGACTGC AAAGTCTACGGCATACTTGCCCCTCCAAGAGGCATGCATCCACAAAATTAAGCATGTTGAAGAAGCAGGTTTAGTTCCAG GCGTGAGAGACGAATTTGTAATCATTGGTGAAAATGAATCTGATGATACCTTGTTCTTGAGTTTAAAGTCTATTCAGTTT GGGCTTGCATGGGAACGCTGTAGACAGCTTCAGGCTGAAGATGCTGTTGTCAAGGGTAAAGTGAGTTTTGTGTTCTAAGA CATTCATATTTGTGTTGATTTCAAACCAGAATACACACACACATATATATAATATCAATTTCTTGTAATCTCTATTAAAA GGAAAACTGTTATTATTACCTTTGTGAATTTATATATTCTCTCCTCCTTAGCCATCTTTCTTTTTCTCCTCATATGTGCA CTTTGTGTGGCAGATTGTTAATGCAAACAAAGGTGGTGTGGTGGCTGAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTCT CACAGATATCAACGGTTAGCTTCTTGACGTGCTTTGATATTTATGGACTTACATGCATCCAGTTCAAACTTTCCATTTGA CAAGAGCCAACTTATGGCCAGTGAAAAAAGTTATTAGGGTTTATAGTGGAAATCAAAATCAGATGAGTGTAACCTACTTT TGTGTTATATCAAAGAATAAAATCAAAGCCCTGATGCAATATACCATGCATTATGTATAATGACAAAGACATAGTAATTC TTTGACAAGTATTGGTGACACAAACTTATGAATATCACCCTTCCACTATTCTTACATATGTGTTGAAACTAAGTCATGCA TTTAAGTTTATAGAACTTCAATTGCTCAATTATATTTTTATCTTTTCCCTTTCTGCTTATTTTCATTTAGAAATCGACTG GAGAAGAGCTTCTTGAGAAGGAGATTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTCATCCTCAGTCAC CGGAAAGCTGTGGCCGACAGCCAGGGACAGCTAGGAATTGGATCAGTAGTCACCGGATCTGTGCAAAGCCTAAAGCCATA TGGTGCCTTCATCGACATTGGTGGGATCAGCGGCCTCCTTCACGTCAGTCAGATCAGTCATGATCGTATAACTGATATTT CAACTGTTCTTCAACCCGGTGACATTCTGAAGGTAAATATATATAAAGCTACGTGTATATGTGCTTACAATTGCAGGTGC CATGTTGACATATAATCTTATTTAATCTTTGATTAGGTGATGATATTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCT TTCAACAAAGAAGTTAGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGTATGATTCAAAG TCAGGATCACAGGCCTTTTTCCGGCTGCATATCTAAACTGTAATTGTAGAATATCAGGGGCTTTGCTAGTGATGGCTTAT TTCCACTTCCTGCCTTTTCTGCTATTCATGATTTATTCCTAAAAGAAGTCAAAATACAGGGTTCCTTTTCGTTCTATGTT ATAGTTCTTTACAGCTCTTCCCTTCAATGATTAATCATCTACTTCAACCCTTTTCATTATGAGAATGCACAATCGTAATT CTTAATCTGCTCTTATAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGC TGATATGCTTAGGTTCCAGCCAGAGGTATTTATTTGTTAATTATATGTTTAAATTATAAACTGCATGAAAATGAAGCAAG GGATCCTAGGTGACTAAAATACAAATAGCATAAAGAAGTCACTTCTTGCTGCTGATGATGAAGAGTCTTAGAGCTTCTGA AATGACAGGGTTTAGAGGACATAAACAAAATTTGTGCATTTCACTTCACCTTATAGAATTCATGCATGGTGGGAGAGATA TGTAATGGGCTCATTTTACAAACTATTTCACCCTTATCCTTCATTTCTTTACAGAGTGGATTAACTCTCAGCAGTGATGG GATCTTAGGACCACTTGGTTCAGACTTACCTGCAGAGGGGCTTGATCTGAGTGATGAAGTATCCCTACCTGAGTGATTCA TAATTGAGAATTCAGAACCTGCTCCCCCTCCCCTCTTTTTCTCTTCTTTTTGTACCTTGCTCTAAATATTGTTGTACAAT GATAAACCTAACGTTTTCTTTTCTCACAGCATAAAAATGAACAACTCCATTCTCTGTACCTATTTGAGCAAATTACCCCC TTGCTACCATAGTTGAGTTATTTCACATCTTACCTTTATAATGATTCTTTTCTGTCCAAATTTAGGAGAGGTTGCCTCTG TTAGAAACCAGAAATAACAATGTGCACAAGTGGAAAATGAAATGTTAGAGCTTTATATTCACAATGAATTGGAGAATGAA TTACAGGAAAAGAGAAAGAAAGTCTCTCTTCTTGCCCAGAGCTAAGCTCCTTACAGGTATGCACTATGCATTCTGCCCT
CDS sequence (LotjaGi6g1v0262600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCATCTGTGGCTCAGCAATTGAGTGCTGTTCGGTGGTCTCCAATGCTATGGAGGCGGAGCCAGAAGCAGAG GCGCGGTGCTGGTACCATCGTCTGTTCGGTTGCAATCTCGAACGCACAGAACAAAGAGAGAGCCAAGCTCAAACAGCTCT TTGAAGATGCTTACGAGAGGTGCCGCACTGCTCCTACAGATGGTGTTTCCTTCACCCTCGAGCAGTTCACTACCGCTCTC GAGAAGTATGACTTCGATGCTGAGATTGGGACCAAGGTTAAGGGCACTGTGTTTGGTACTGATGCCAGTGGAGCTTATGT TGATATGACTGCAAAGTCTACGGCATACTTGCCCCTCCAAGAGGCATGCATCCACAAAATTAAGCATGTTGAAGAAGCAG GTTTAGTTCCAGGCGTGAGAGACGAATTTGTAATCATTGGTGAAAATGAATCTGATGATACCTTGTTCTTGAGTTTAAAG TCTATTCAGTTTGGGCTTGCATGGGAACGCTGTAGACAGCTTCAGGCTGAAGATGCTGTTGTCAAGGGTAAAATTGTTAA TGCAAACAAAGGTGGTGTGGTGGCTGAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAGATATCAACGAAATCGA CTGGAGAAGAGCTTCTTGAGAAGGAGATTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTCATCCTCAGT CACCGGAAAGCTGTGGCCGACAGCCAGGGACAGCTAGGAATTGGATCAGTAGTCACCGGATCTGTGCAAAGCCTAAAGCC ATATGGTGCCTTCATCGACATTGGTGGGATCAGCGGCCTCCTTCACGTCAGTCAGATCAGTCATGATCGTATAACTGATA TTTCAACTGTTCTTCAACCCGGTGACATTCTGAAGGTGATGATATTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTT TCAACAAAGAAGTTAGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGC TCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGAT TAACTCTCAGCAGTGATGGGATCTTAGGACCACTTGGTTCAGACTTACCTGCAGAGGGGCTTGATCTGAGTGATGAAGTA TCCCTACCTGAGTGA
Protein sequence (LotjaGi6g1v0262600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMASVAQQLSAVRWSPMLWRRSQKQRRGAGTIVCSVAISNAQNKERAKLKQLFEDAYERCRTAPTDGVSFTLEQFTTAL EKYDFDAEIGTKVKGTVFGTDASGAYVDMTAKSTAYLPLQEACIHKIKHVEEAGLVPGVRDEFVIIGENESDDTLFLSLK SIQFGLAWERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSTGEELLEKEIPLKFVEVDEEQSRLILS HRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDIGGISGLLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSL STKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPAEGLDLSDEV SLPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 21 | 262 | 242 | 2.6E-125 | – | |
| PANTHER | 21 | 262 | 242 | 2.6E-125 | – | |
| Phobius | 29 | 37 | 9 | - | – | |
| Phobius | 38 | 42 | 5 | - | – | |
| Phobius | 43 | 404 | 362 | - | – | |
| Gene3D | 72 | 170 | 99 | 3.4E-8 | – | |
| SUPERFAMILY | 83 | 185 | 103 | 7.01E-12 | ||
| SMART | 88 | 160 | 73 | 5.8E-5 | ||
| ProSiteProfiles | 90 | 160 | 71 | 12.057 | ||
| Gene3D | 171 | 250 | 80 | 2.2E-9 | – | |
| SUPERFAMILY | 173 | 246 | 74 | 6.12E-11 | ||
| SMART | 176 | 242 | 67 | 2.4E-9 | ||
| Pfam | 176 | 242 | 67 | 4.5E-11 | ||
| ProSiteProfiles | 178 | 242 | 65 | 15.161 | ||
| CDD | 178 | 242 | 65 | 9.80034E-22 | – | |
| Gene3D | 251 | 331 | 81 | 2.3E-23 | – | |
| PANTHER | 251 | 391 | 141 | 2.6E-125 | – | |
| PANTHER | 251 | 391 | 141 | 2.6E-125 | – | |
| Pfam | 253 | 323 | 71 | 3.4E-20 | ||
| SMART | 253 | 323 | 71 | 1.1E-24 | ||
| SUPERFAMILY | 254 | 333 | 80 | 2.39E-21 | ||
| ProSiteProfiles | 255 | 323 | 69 | 21.911 | ||
| CDD | 255 | 323 | 69 | 4.13181E-30 | – | |
| Coils | 340 | 360 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0262600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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