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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0264200 |
| Transcript ID | LotjaGi6g1v0264200.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer epsilon subunit; TAIR: AT1G30630.1 Coatomer epsilon subunit; Swiss-Prot: sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1; TrEMBL-Plants: tr|A0A0S3S4G6|A0A0S3S4G6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0264200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57776074..57781140) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAATAAAGAGGAGGGAGTTTGGCCTAATTTAAATCGGTTGAATTTTGGTAGTTCAACCCACACTTTTTTATCGAACT ATTTGGACCGGCCTTTGTGCCTAGCCAATTTTGACACCACTACAAAAGAGATACGTAATTTTCTCTTGAGTCGCGAGCGC ATACAAGATAAGATATACACGCATTTTGTGGCGATTTGAAACCGTCATACTTATGTTTCACTTAAAACAAAACGGAGCAC AAACCGTCACAAACCTATATCTCGCAAGTGTGTCGAACTTACGATATGGGCCCATGGACTCTAGTTTATTAAATAGAGAA AAAAAACCCAAGCCCAATTTGAACAAAAGCCCACAATAATTTCATCAGAGAAATCAAGATCGAACACAAAAGGCTTCCAT ATTCAATTTCTCTTCACTTCCATTCTCTCTGCAATTCACTTCTCCATCCATCGATCGCAATCTGCAACTTCCAGTGATCG TTGGTGAAAATCAAGATCTAGATCTAGATCAATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCG GCGCATTCCAAGCCGCCATCAACAGCAGCGACGTCAATGGCCTCTCCGACGACGACGCCGTCGAGCGCGACTCCCTCGTC CACCGCTGCTACATCGCCCTCGGCCAGTTGCAGTTCGTCATCTCCGAGATCCACGATTCCTCCCCTACACCTCTCCAAGC TGTGAAGTTGCTCGCTCTCTACTTCTCCGCTCCCGACAACAAGGTACCTCCACATCCACTCCTTCTTCTCCTCCTCCTCA ATTTCTCGTTTCCGCATTCAATTTCTCATCTCGCGCTTCAATTTCTCGTAGGAATCCGTCATTGCCAGCCTCAAGGAATG GCTCTCCGATCCAGCGATCGGCAACAACTCTACACTCAGGCTCGTTGCTGGTCTCATCTTCCTGCACGAGCAGGATTTCA ATGAGGCGCTCAAACACACCAATGCCGGTGGAACCTTGGAGCTGTAATTCCATTCACTGTTCTTCTCTGTGTTCAGTTAT TTTGATTTGCCATGGAGAAAGTGATTCTGATTTGTGCATTTTTTGTTTTGTTTTGTAGGCACGCTTTGAATGTGCAGATC TTCATCAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTCAGGATCATGCAGCAGATTGATGAGGATCACACTCTCAC CCAACTTGCCAATGCATGGCTAGATTTGGCTGTGGTATTCAAATTAGTTCAATTTTAGTTCTTAATGTGTGCTTGTTTCA TTATTTCTTTAGGTTCTAGTGTAAATTGATATATCTTGAATAACAGTAATAGACGACTTTGGTGGTATCGAAATGATCTT TTAATGGTTAGATTTACCCTTTTGTGAACATGGTGAGGCTATTTCGAAAAACAAGAGACTAAAATAGGGTGTTTTGAAAA AAATTCAGGATCAGAAACATATGTCATCAGTATTTTATTTTTGTTTTAGATTTTAATGTTTGGTGGGTGGAGAAGGGGAT GGGTGAATTTGGGATTTAATGTTGCGTGGTTGGATCTCAGGGTGGGTCGAAGATCCAGGAGGCATATCTGATCTTCCAAG ATTTGTCTGAGAGGTATCAGTCCACCAGTTTGCTCTTGAATGGGAAGGCTGTATGCTGCATGCACATGGGCAACTTTGAC GAAGCCGAGACTCTTTTGGTTGAAGCACTCAACAAGGCATGTTTTATTACATAGAATCAATCCCGCGTGCTTGGAACTGT GCTGTTTATTTGTATTGATTGCTTCTGTTAAGTGGTATTGGAATATTGCATCATGTTTTCTCATTCTGTTAAGTAATTGA TTCGATAGAGTTCAAAATGATCTCAGTTGTCTTTCCATTCAGCAACTTTTCAATGGTTTTTTTTTTATTCTGTCTCATTG ATTTTTCAGCCTTTGTTTTGTAGTAGCTCTCAATTATTTTGAACCTTTAAGCTGTACTGAAATAGAGTTTATTGTTGATT CCAAAAATGGTGGGTGTAGTGAAGGAATTCTTTGTGATTTGTACAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAG TTGTGTGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGGTAAACTCACAGGACATCTTTGTTGTTTGCTTCT CTGTTTTTCTATCTGAATAAGCAATCACGTCTTCTGATGAACCCCTTTATTTTTCCATGTAATATCTTTCACTATATCAC CTTTCTTTTGATGAATGTGTGAACCCCTTTGTTGTGCATAGGCTAGCTAAATTATTTGTTCCTAAAGAAGTGCTATTAAA TTTTGAATTATGTATTTTGTATGAGCCAGGCCCTTGAAGTAATATTTATATATGAAATTTATCTTCCAAACTAGTGTCTT AGGTCATTGTTAATAACATCCATTTGTAGCTCTCAAGTGTTAAACGATAGCAGTTGTAAATGTGAATTCTATGATCGTCA TAGATGGACCAATTTCTGTTAAAATTCTTTGAAGCATGTTCTCAAACTTTTGTAAAAAGCTGTGGAATATTGTGCTAGAA TTTATACAAATTCAAATCCTTATGTTTTTTTGGGTTTTAACATTCTGGTCCATCCCCTGGTCTGGTGTTGGGTCCTCGAA GTAGGAGGTCATAAGTAGATGGGATCTCATGATCCAGATTGGTTCAGTTTAAGGCTTAATATTGAACAGAACATTAATTT CACGGATAGCAATTGGAAACTAAACCACATTATGGTTGAGTTTGGCTGTTTCTCAGCATGATTAATTGGTGTGTCTAATA TTACTATTACTGTATCATTACTGAACTTGTTACATTTTAATCATATTCAATAGTAATAGTAACTTATAACTTAATATAAC ATCAATTAATTAAATTATAGTACATCAAGAAATCTCAAATTATAATATTACCTAGAATATATTAGGTAGGTATCGATAAT TCAAATACTATAGTACATCTCCAATACTGAAATGATAAAATGGCAAGTCCGAAACTCACGTCATATATATGTAATATATG CAAAATATGTCGATATATTCTATCATGTGTATGTGCAGTTCTGCTCAGTTTAAATGATGGTTATTTATGCTTCATAACAT TGAACCAGAACATACTGGAAAGAAACTATTTTGAACGACTCTAGTGTAAAGATCTTATGCTTAGATGAACCAACATACTT GTACTTTTCTTTTACTTGTTATTTTCCTTTGTAAATAGCTTGCATCCGTACAATCAGTGAAATGGATGCACTCTTTAAGT TTGACAATAAGTTTCTTATCTTATGGTCCTGTGACTACTTTGAAAGTTATTTGTATGCAAACATCAATTGCTCGTATCAA GTGTCAGATCCATGAAGTTAGTTATGAGTTATGACAAACTGAACTTTGATTGTGACGTTTTTCTGTGTCATGTGCGTTTC AAGATATAATATAAACTAACCAAGACTATGCTTAGTTCATATAATTGTGATTGAAAATTTTGCACAAAGGGGTGACTTGT ATATTGTTTTGCAGCCAACTGAAGCTTTCACACCCAGACCATGTACTTGTCAAACGGGTATCAACAGCAGAAGAAAGCTT TGATCGAGCCCTACAATCATTCTCTTAATGAGTTAATGATTCTATTTCTTCAAAGAGTTAATGGTGTGAGGTCTTCCCAT ACAATTTTTTACACCTCATTGTAGCTATTGTATTGGTTACTTATCTGAGAACATAACCAGTTGGGTAAATGTGTCATAGG ATTCAAATTTTATGACGATGTTTGTCTTACTTGAATCTTGATGTTGCAAAAACTACAGCTAATATTATTATTATGCAAGT TCATTTACTTGATATTTTTACAGGAAATGTAAGAAATAACTATGGGATAGTAAAACAAATTTACAACTGCGTGGATGATT ATCATGTATAAAAGTGTTCTATGTCAAAAGAGTTTTGCTCCTCTCTACAAAGCTTTTTCAAAATACAAGACTAATGATCA AACATTTACTGACATACTTAAGGGATTCAAAGGTTATCCACCAAATGTGCTGGGGCTTTTCTGGTTTTCAACGTTCAATT CCATCTCTTATAGTATTTGGGATTTTGGGAATGTTAAGTTTATCAGAACTAGACAGCAATTGTTTTCCGATGTACCTGAA AAAAAAAAAAAACTAGACAGCAATTACTTTTAAACACATGTATTTTGAAGAGAAAAAAAAACCTTATGTATCCAAGTTAT ATTTGAAAGTGTTTATTTAAAATCTTAAAACTATTTACTCACTGTTAAATAAATTTATTTTACATACCAACTCCCAAATG ATAATGAAAAGCTATTTAACAGATATAACAAAGTAAGTTCAAAAAGTATAAATTAGCAAGTGGATGAGACTCATTCCAAC TATTACATATGAAAAAAAAACTCATTGGTCATCCCCTAATTTTTTTTTGTTACATGGCGGGGCTAAACCCAGGAAACAAA CTAGATACTAGGCCCTACAGCTGACCAAGAGGGCACTCCCTCGAGCCTCAGCCAAGTCCAATGACAGCAATCGATGACAA TCTCCAAACGGGGAAGGGAACACATGAATTCCAAGCTGAAACTACAACACGGCGCTAGCTAGCCAATGAGCTACCTGGTT CCCTCTGCACAAAATAGCAAGTGATGCCTCCATGGAAATCAATCCCTCTTCTGATAGCCTCCACAATCTCCATATACGGA CCACTAGTGATGGCCTCCGCATTAATCTGGTTAATGGCTTCCAGACAATCAGATTCTATTATCACTATGAGAAAGCTATT ATCAATCGTTGTACGAATGGCCGTGAGCTCGGCATGGAGCGGGATCAAAGTACCTTCGTTTAGAAAAATATATATATATT TGATGTAATGAAGAACGAAATTCCTCAATGAACCTGAAAATTCTTTGTCTGAATCTCACATTCAAGCTTCAAAAGAAATA AAACCAAGTATCCAATATTGTCGGTAAAATTAATTCGTAGGCTCGAGTTGTTCCAACAGAAGGAGACATAAAAAGCAGCA GAATCAGCCTTTCACGTTCAACTGTTA
CDS sequence (LotjaGi6g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCATTCCAAGCCGCCATCAACAGCAGCGA CGTCAATGGCCTCTCCGACGACGACGCCGTCGAGCGCGACTCCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGTTGC AGTTCGTCATCTCCGAGATCCACGATTCCTCCCCTACACCTCTCCAAGCTGTGAAGTTGCTCGCTCTCTACTTCTCCGCT CCCGACAACAAGGAATCCGTCATTGCCAGCCTCAAGGAATGGCTCTCCGATCCAGCGATCGGCAACAACTCTACACTCAG GCTCGTTGCTGGTCTCATCTTCCTGCACGAGCAGGATTTCAATGAGGCGCTCAAACACACCAATGCCGGTGGAACCTTGG AGCTGCACGCTTTGAATGTGCAGATCTTCATCAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTCAGGATCATGCAG CAGATTGATGAGGATCACACTCTCACCCAACTTGCCAATGCATGGCTAGATTTGGCTGTGGGTGGGTCGAAGATCCAGGA GGCATATCTGATCTTCCAAGATTTGTCTGAGAGGTATCAGTCCACCAGTTTGCTCTTGAATGGGAAGGCTGTATGCTGCA TGCACATGGGCAACTTTGACGAAGCCGAGACTCTTTTGGTTGAAGCACTCAACAAGGCATGTTTTATTACATAG
Protein sequence (LotjaGi6g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHRCYIALGQLQFVISEIHDSSPTPLQAVKLLALYFSA PDNKESVIASLKEWLSDPAIGNNSTLRLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQ QIDEDHTLTQLANAWLDLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKACFIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 233 | 233 | 2.7E-129 | – | |
| PANTHER | 1 | 233 | 233 | 2.7E-129 | ||
| Pfam | 3 | 232 | 230 | 5.2E-112 | – | |
| Gene3D | 5 | 234 | 230 | 3.9E-85 | ||
| SUPERFAMILY | 105 | 231 | 127 | 3.21E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of LotjaGi6g1v0264200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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