Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0264200.2

Overview

Field Value
Gene ID LotjaGi6g1v0264200
Transcript ID LotjaGi6g1v0264200.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Coatomer epsilon subunit; TAIR: AT1G30630.1 Coatomer epsilon subunit; Swiss-Prot: sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1; TrEMBL-Plants: tr|Q9MAX8|Q9MAX8_SOYBN Epsilon1-COP; Found in the gene: LotjaGi6g1v0264200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57776283..57780032) extracted from Lotus japonicus Gifu genome v1.2.

CTTATGTTTCACTTAAAACAAAACGGAGCACAAACCGTCACAAACCTATATCTCGCAAGTGTGTCGAACTTACGATATGG GCCCATGGACTCTAGTTTATTAAATAGAGAAAAAAAACCCAAGCCCAATTTGAACAAAAGCCCACAATAATTTCATCAGA GAAATCAAGATCGAACACAAAAGGCTTCCATATTCAATTTCTCTTCACTTCCATTCTCTCTGCAATTCACTTCTCCATCC ATCGATCGCAATCTGCAACTTCCAGTGATCGTTGGTGAAAATCAAGATCTAGATCTAGATCAATGGCTACACCGGACCAC CTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCATTCCAAGCCGCCATCAACAGCAGCGACGTCAATGGCCTCTCCGA CGACGACGCCGTCGAGCGCGACTCCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGTTGCAGTTCGTCATCTCCGAGA TCCACGATTCCTCCCCTACACCTCTCCAAGCTGTGAAGTTGCTCGCTCTCTACTTCTCCGCTCCCGACAACAAGGTACCT CCACATCCACTCCTTCTTCTCCTCCTCCTCAATTTCTCGTTTCCGCATTCAATTTCTCATCTCGCGCTTCAATTTCTCGT AGGAATCCGTCATTGCCAGCCTCAAGGAATGGCTCTCCGATCCAGCGATCGGCAACAACTCTACACTCAGGCTCGTTGCT GGTCTCATCTTCCTGCACGAGCAGGATTTCAATGAGGCGCTCAAACACACCAATGCCGGTGGAACCTTGGAGCTGTAATT CCATTCACTGTTCTTCTCTGTGTTCAGTTATTTTGATTTGCCATGGAGAAAGTGATTCTGATTTGTGCATTTTTTGTTTT GTTTTGTAGGCACGCTTTGAATGTGCAGATCTTCATCAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTCAGGATCA TGCAGCAGATTGATGAGGATCACACTCTCACCCAACTTGCCAATGCATGGCTAGATTTGGCTGTGGTATTCAAATTAGTT CAATTTTAGTTCTTAATGTGTGCTTGTTTCATTATTTCTTTAGGTTCTAGTGTAAATTGATATATCTTGAATAACAGTAA TAGACGACTTTGGTGGTATCGAAATGATCTTTTAATGGTTAGATTTACCCTTTTGTGAACATGGTGAGGCTATTTCGAAA AACAAGAGACTAAAATAGGGTGTTTTGAAAAAAATTCAGGATCAGAAACATATGTCATCAGTATTTTATTTTTGTTTTAG ATTTTAATGTTTGGTGGGTGGAGAAGGGGATGGGTGAATTTGGGATTTAATGTTGCGTGGTTGGATCTCAGGGTGGGTCG AAGATCCAGGAGGCATATCTGATCTTCCAAGATTTGTCTGAGAGGTATCAGTCCACCAGTTTGCTCTTGAATGGGAAGGC TGTATGCTGCATGCACATGGGCAACTTTGACGAAGCCGAGACTCTTTTGGTTGAAGCACTCAACAAGGCATGTTTTATTA CATAGAATCAATCCCGCGTGCTTGGAACTGTGCTGTTTATTTGTATTGATTGCTTCTGTTAAGTGGTATTGGAATATTGC ATCATGTTTTCTCATTCTGTTAAGTAATTGATTCGATAGAGTTCAAAATGATCTCAGTTGTCTTTCCATTCAGCAACTTT TCAATGGTTTTTTTTTTATTCTGTCTCATTGATTTTTCAGCCTTTGTTTTGTAGTAGCTCTCAATTATTTTGAACCTTTA AGCTGTACTGAAATAGAGTTTATTGTTGATTCCAAAAATGGTGGGTGTAGTGAAGGAATTCTTTGTGATTTGTACAGGAT GCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTGTGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGGTA AACTCACAGGACATCTTTGTTGTTTGCTTCTCTGTTTTTCTATCTGAATAAGCAATCACGTCTTCTGATGAACCCCTTTA TTTTTCCATGTAATATCTTTCACTATATCACCTTTCTTTTGATGAATGTGTGAACCCCTTTGTTGTGCATAGGCTAGCTA AATTATTTGTTCCTAAAGAAGTGCTATTAAATTTTGAATTATGTATTTTGTATGAGCCAGGCCCTTGAAGTAATATTTAT ATATGAAATTTATCTTCCAAACTAGTGTCTTAGGTCATTGTTAATAACATCCATTTGTAGCTCTCAAGTGTTAAACGATA GCAGTTGTAAATGTGAATTCTATGATCGTCATAGATGGACCAATTTCTGTTAAAATTCTTTGAAGCATGTTCTCAAACTT TTGTAAAAAGCTGTGGAATATTGTGCTAGAATTTATACAAATTCAAATCCTTATGTTTTTTTGGGTTTTAACATTCTGGT CCATCCCCTGGTCTGGTGTTGGGTCCTCGAAGTAGGAGGTCATAAGTAGATGGGATCTCATGATCCAGATTGGTTCAGTT TAAGGCTTAATATTGAACAGAACATTAATTTCACGGATAGCAATTGGAAACTAAACCACATTATGGTTGAGTTTGGCTGT TTCTCAGCATGATTAATTGGTGTGTCTAATATTACTATTACTGTATCATTACTGAACTTGTTACATTTTAATCATATTCA ATAGTAATAGTAACTTATAACTTAATATAACATCAATTAATTAAATTATAGTACATCAAGAAATCTCAAATTATAATATT ACCTAGAATATATTAGGTAGGTATCGATAATTCAAATACTATAGTACATCTCCAATACTGAAATGATAAAATGGCAAGTC CGAAACTCACGTCATATATATGTAATATATGCAAAATATGTCGATATATTCTATCATGTGTATGTGCAGTTCTGCTCAGT TTAAATGATGGTTATTTATGCTTCATAACATTGAACCAGAACATACTGGAAAGAAACTATTTTGAACGACTCTAGTGTAA AGATCTTATGCTTAGATGAACCAACATACTTGTACTTTTCTTTTACTTGTTATTTTCCTTTGTAAATAGCTTGCATCCGT ACAATCAGTGAAATGGATGCACTCTTTAAGTTTGACAATAAGTTTCTTATCTTATGGTCCTGTGACTACTTTGAAAGTTA TTTGTATGCAAACATCAATTGCTCGTATCAAGTGTCAGATCCATGAAGTTAGTTATGAGTTATGACAAACTGAACTTTGA TTGTGACGTTTTTCTGTGTCATGTGCGTTTCAAGATATAATATAAACTAACCAAGACTATGCTTAGTTCATATAATTGTG ATTGAAAATTTTGCACAAAGGGGTGACTTGTATATTGTTTTGCAGCCAACTGAAGCTTTCACACCCAGACCATGTACTTG TCAAACGGGTATCAACAGCAGAAGAAAGCTTTGATCGAGCCCTACAATCATTCTCTTAATGAGTTAATGATTCTATTTCT TCAAAGAGTTAATGGTGTGAGGTCTTCCCATACAATTTTTTACACCTCATTGTAGCTATTGTATTGGTTACTTATCTGAG AACATAACCAGTTGGGTAAATGTGTCATAGGATTCAAATTTTATGACGATGTTTGTCTTACTTGAATCTTGATGTTGCAA AAACTACAGCTAATATTATTATTATGCAAGTTCATTTACTTGATATTTTTACAGGAAATGTAAGAAATAACTATGGGATA GTAAAACAAATTTACAACTGCGTGGATGATTATCATGTATAAAAGTGTTCTATGTCAAAAGAGTTTTGCT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0264200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCATTCCAAGCCGCCATCAACAGCAGCGA CGTCAATGGCCTCTCCGACGACGACGCCGTCGAGCGCGACTCCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGTTGC AGTTCGTCATCTCCGAGATCCACGATTCCTCCCCTACACCTCTCCAAGCTGTGAAGTTGCTCGCTCTCTACTTCTCCGCT CCCGACAACAAGGAATCCGTCATTGCCAGCCTCAAGGAATGGCTCTCCGATCCAGCGATCGGCAACAACTCTACACTCAG GCTCGTTGCTGGTCTCATCTTCCTGCACGAGCAGGATTTCAATGAGGCGCTCAAACACACCAATGCCGGTGGAACCTTGG AGCTGCACGCTTTGAATGTGCAGATCTTCATCAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTCAGGATCATGCAG CAGATTGATGAGGATCACACTCTCACCCAACTTGCCAATGCATGGCTAGATTTGGCTGTGGGTGGGTCGAAGATCCAGGA GGCATATCTGATCTTCCAAGATTTGTCTGAGAGGTATCAGTCCACCAGTTTGCTCTTGAATGGGAAGGCTGTATGCTGCA TGCACATGGGCAACTTTGACGAAGCCGAGACTCTTTTGGTTGAAGCACTCAACAAGGATGCCAGGGATCCAGAAACTCTA GCCAATCTAGTTGTGTGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAACTGAAGCTTTCACACCCAGA CCATGTACTTGTCAAACGGGTATCAACAGCAGAAGAAAGCTTTGATCGAGCCCTACAATCATTCTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0264200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHRCYIALGQLQFVISEIHDSSPTPLQAVKLLALYFSA PDNKESVIASLKEWLSDPAIGNNSTLRLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQ QIDEDHTLTQLANAWLDLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETL ANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSTAEESFDRALQSFS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10805:SF3
1 288 288 8.3E-161 –
PANTHER
PTHR10805
1 288 288 8.3E-161
IPR006822
PIRSF
PIRSF016478
2 289 288 7.8E-87
IPR006822
Pfam
PF04733
3 288 286 3.9E-137 –
Gene3D
G3DSA:1.25.40.10
5 289 285 8.4E-106
IPR011990
SUPERFAMILY
SSF48452
102 252 151 4.0E-11
IPR011990

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005198
Molecular function Structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0264200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…