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LotjaGi6g1v0264200.4

Overview

Field Value
Gene ID LotjaGi6g1v0264200
Transcript ID LotjaGi6g1v0264200.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Coatomer epsilon subunit; TAIR: AT1G30630.1 Coatomer epsilon subunit; Swiss-Prot: sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1; TrEMBL-Plants: tr|Q9MAX8|Q9MAX8_SOYBN Epsilon1-COP; Found in the gene: LotjaGi6g1v0264200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57776585..57779701) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCATTCCAAGCCGCCATCAACAGCAGCGA CGTCAATGGCCTCTCCGACGACGACGCCGTCGAGCGCGACTCCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGTTGC AGTTCGTCATCTCCGAGATCCACGATTCCTCCCCTACACCTCTCCAAGCTGTGAAGTTGCTCGCTCTCTACTTCTCCGCT CCCGACAACAAGGTACCTCCACATCCACTCCTTCTTCTCCTCCTCCTCAATTTCTCGTTTCCGCATTCAATTTCTCATCT CGCGCTTCAATTTCTCGTAGGAATCCGTCATTGCCAGCCTCAAGGAATGGCTCTCCGATCCAGCGATCGGCAACAACTCT ACACTCAGGCTCGTTGCTGGTCTCATCTTCCTGCACGAGCAGGATTTCAATGAGGCGCTCAAACACACCAATGCCGGTGG AACCTTGGAGCTGTAATTCCATTCACTGTTCTTCTCTGTGTTCAGTTATTTTGATTTGCCATGGAGAAAGTGATTCTGAT TTGTGCATTTTTTGTTTTGTTTTGTAGGCACGCTTTGAATGTGCAGATCTTCATCAAGATGCATAGGTCGGATTATGCTG AGAGGCAGCTCAGGATCATGCAGCAGATTGATGAGGATCACACTCTCACCCAACTTGCCAATGCATGGCTAGATTTGGCT GTGGTATTCAAATTAGTTCAATTTTAGTTCTTAATGTGTGCTTGTTTCATTATTTCTTTAGGTTCTAGTGTAAATTGATA TATCTTGAATAACAGTAATAGACGACTTTGGTGGTATCGAAATGATCTTTTAATGGTTAGATTTACCCTTTTGTGAACAT GGTGAGGCTATTTCGAAAAACAAGAGACTAAAATAGGGTGTTTTGAAAAAAATTCAGGATCAGAAACATATGTCATCAGT ATTTTATTTTTGTTTTAGATTTTAATGTTTGGTGGGTGGAGAAGGGGATGGGTGAATTTGGGATTTAATGTTGCGTGGTT GGATCTCAGGGTGGGTCGAAGATCCAGGAGGCATATCTGATCTTCCAAGATTTGTCTGAGAGGTATCAGTCCACCAGTTT GCTCTTGAATGGGAAGGCTGTATGCTGCATGCACATGGGCAACTTTGACGAAGCCGAGACTCTTTTGGTTGAAGCACTCA ACAAGGCATGTTTTATTACATAGAATCAATCCCGCGTGCTTGGAACTGTGCTGTTTATTTGTATTGATTGCTTCTGTTAA GTGGTATTGGAATATTGCATCATGTTTTCTCATTCTGTTAAGTAATTGATTCGATAGAGTTCAAAATGATCTCAGTTGTC TTTCCATTCAGCAACTTTTCAATGGTTTTTTTTTTATTCTGTCTCATTGATTTTTCAGCCTTTGTTTTGTAGTAGCTCTC AATTATTTTGAACCTTTAAGCTGTACTGAAATAGAGTTTATTGTTGATTCCAAAAATGGTGGGTGTAGTGAAGGAATTCT TTGTGATTTGTACAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTGTGCTGTCTTCATCTTGGCAAACCATC TTCTAAATCATTCAGGTAAACTCACAGGACATCTTTGTTGTTTGCTTCTCTGTTTTTCTATCTGAATAAGCAATCACGTC TTCTGATGAACCCCTTTATTTTTCCATGTAATATCTTTCACTATATCACCTTTCTTTTGATGAATGTGTGAACCCCTTTG TTGTGCATAGGCTAGCTAAATTATTTGTTCCTAAAGAAGTGCTATTAAATTTTGAATTATGTATTTTGTATGAGCCAGGC CCTTGAAGTAATATTTATATATGAAATTTATCTTCCAAACTAGTGTCTTAGGTCATTGTTAATAACATCCATTTGTAGCT CTCAAGTGTTAAACGATAGCAGTTGTAAATGTGAATTCTATGATCGTCATAGATGGACCAATTTCTGTTAAAATTCTTTG AAGCATGTTCTCAAACTTTTGTAAAAAGCTGTGGAATATTGTGCTAGAATTTATACAAATTCAAATCCTTATGTTTTTTT GGGTTTTAACATTCTGGTCCATCCCCTGGTCTGGTGTTGGGTCCTCGAAGTAGGAGGTCATAAGTAGATGGGATCTCATG ATCCAGATTGGTTCAGTTTAAGGCTTAATATTGAACAGAACATTAATTTCACGGATAGCAATTGGAAACTAAACCACATT ATGGTTGAGTTTGGCTGTTTCTCAGCATGATTAATTGGTGTGTCTAATATTACTATTACTGTATCATTACTGAACTTGTT ACATTTTAATCATATTCAATAGTAATAGTAACTTATAACTTAATATAACATCAATTAATTAAATTATAGTACATCAAGAA ATCTCAAATTATAATATTACCTAGAATATATTAGGTAGGTATCGATAATTCAAATACTATAGTACATCTCCAATACTGAA ATGATAAAATGGCAAGTCCGAAACTCACGTCATATATATGTAATATATGCAAAATATGTCGATATATTCTATCATGTGTA TGTGCAGTTCTGCTCAGTTTAAATGATGGTTATTTATGCTTCATAACATTGAACCAGAACATACTGGAAAGAAACTATTT TGAACGACTCTAGTGTAAAGATCTTATGCTTAGATGAACCAACATACTTGTACTTTTCTTTTACTTGTTATTTTCCTTTG TAAATAGCTTGCATCCGTACAATCAGTGAAATGGATGCACTCTTTAAGTTTGACAATAAGTTTCTTATCTTATGGTCCTG TGACTACTTTGAAAGTTATTTGTATGCAAACATCAATTGCTCGTATCAAGTGTCAGATCCATGAAGTTAGTTATGAGTTA TGACAAACTGAACTTTGATTGTGACGTTTTTCTGTGTCATGTGCGTTTCAAGATATAATATAAACTAACCAAGACTATGC TTAGTTCATATAATTGTGATTGAAAATTTTGCACAAAGGGGTGACTTGTATATTGTTTTGCAGCCAACTGAAGCTTTCAC ACCCAGACCATGTACTTGTCAAACGGGTATCAACAGCAGAAGAAAGCTTTGATCGAGCCCTACAATCATTCTCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0264200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCATTCCAAGCCGCCATCAACAGCAGCGA CGTCAATGGCCTCTCCGACGACGACGCCGTCGAGCGCGACTCCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGTTGC AGTTCGTCATCTCCGAGATCCACGATTCCTCCCCTACACCTCTCCAAGCTGTGAAGTTGCTCGCTCTCTACTTCTCCGCT CCCGACAACAAGGAATCCGTCATTGCCAGCCTCAAGGAATGGCTCTCCGATCCAGCGATCGGCAACAACTCTACACTCAG GCTCGTTGCTGGTCTCATCTTCCTGCACGAGCAGGATTTCAATGAGGCGCTCAAACACACCAATGCCGGTGGAACCTTGG AGCTGCACGCTTTGAATGTGCAGATCTTCATCAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTCAGGATCATGCAG CAGATTGATGAGGATCACACTCTCACCCAACTTGCCAATGCATGGCTAGATTTGGCTGTGGGTGGGTCGAAGATCCAGGA GGCATATCTGATCTTCCAAGATTTGTCTGAGAGGTATCAGTCCACCAGTTTGCTCTTGAATGGGAAGGCTGTATGCTGCA TGCACATGGGCAACTTTGACGAAGCCGAGACTCTTTTGGTTGAAGCACTCAACAAGGCATGTTTTATTGATGCCAGGGAT CCAGAAACTCTAGCCAATCTAGTTGTGTGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAACTGAAGCT TTCACACCCAGACCATGTACTTGTCAAACGGGTATCAACAGCAGAAGAAAGCTTTGATCGAGCCCTACAATCATTCTCTT AA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0264200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHRCYIALGQLQFVISEIHDSSPTPLQAVKLLALYFSA PDNKESVIASLKEWLSDPAIGNNSTLRLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQ QIDEDHTLTQLANAWLDLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKACFIDARD PETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSTAEESFDRALQSFS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10805:SF3
1 292 292 6.3E-158 –
PANTHER
PTHR10805
1 292 292 6.3E-158
IPR006822
PIRSF
PIRSF016478
2 293 292 1.2E-83
IPR006822
Pfam
PF04733
3 292 290 4.7E-134 –
Gene3D
G3DSA:1.25.40.10
5 293 289 2.7E-103
IPR011990
SUPERFAMILY
SSF48452
105 257 153 1.18E-9
IPR011990

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005198
Molecular function Structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0264200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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