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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0269500 |
| Transcript ID | LotjaGi6g1v0269500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT4G20900.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SUC3|MS5_ARATH Protein POLLENLESS 3; TrEMBL-Plants: tr|A0A151SB89|A0A151SB89_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0269500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58399560..58403230) extracted from Lotus japonicus Gifu genome v1.2.
TCGATCATTGCATTGCAGTATTGCACCACTCATTGCTCGCGAGTGTGTGTGTTCTCTTCTCCTCTCTTCTCTTCAACCCT CTCTCTCTCTTTCATCTTCCAACGCTTCAAACAGTTCAGATAATTCACACAAGAACGAAGAAGAAGAAGAAGAAGAAGAA GACGAGTTTCATTGAAAAATCACAGTGTCAATTTCTGGTTGAAATCTTCTTCATCACACAATGCCATTTGAAAGAAACTC TCCGGCAAGGTGCTTCATGACGCCACCGCCGCCGCGGCTTTCTTCGTGGAGGTCGACGCCTTCACGCTCTCCCATCATGA TGCCGCTTTCAGAGAGAAAGAGATCATCACCGAACAAAGATGATCCTTATCATGTGATTCACAAGGTTCCTGCTGGTGAT TCTCCCTATGTTAAAGCCAAGCAGGTTCAGGTAACTTTTCTCCTAATACCCTTTTCTTTCTTTTTGAATTTTTTCTCTTG TGTCACTTTTCTTGCTTCAGTTCTTGAAGTTTCTTGTGATTTTTATCAGTTTTACTTTGTTAATGGGGTTTGTGCAATGA TGTTGATTCTGAATGGTTCAATTGCAGTTGGTGGATAAGGATCCTGGGAAAGCCATTTCACTGTTCTGGGCTGCAATCAA TGCTGGGGACCGTGTGGAGAGTGCTTTGAAGGATATGGCCTTAGTCATGAAGCAACTGAACCGTTCTGATGAGGCAATCG AAGCTATTAAATCATTCCGGCATCTGTGCCCTCCTGATTCCCAGGAATCCCTAGACAACATCTTGGTTGAACTCTACAAG GTGAGAATTCAATTCTCTTTTACATGTTGCAGGTGTTACCATTCATTAATTTAGTGAATTGATTTCATTTAAATGAATTT GAATAATCTTGAGGCTAGGCCATTATTTAACAACCTGGGAAAATTAACATTTCTGCATGAATCATCATTTACACATGCAC TTGAATGATTTTGAGGTTAGGCCCTTATTGAATAACCTGGACAGATTAACATTTCTTGCTGGAATCATATTTGTTTGCAA AAAAATGAGGCTAGTTAGACCCTTATTAATGAATGTGAATGTGACATAGTAGAATTGTACTCATAAGAATGTGGAATTTG TATCTTTAAGTAATAAGTAGGAAACAATTTGGAGAAAGGATTCAAATGGCTATCATGTTGTGAATTCTCATTTGCATTGT AGGACTTTTATCACAAATCTTGTTTTCCATCCGAATTTGACTGCTGAAGGATTTTAGACTGTTTTCCATCATTTGCATGC ACTTAAATGATCTTGAGGCTAGGCCCTTATCGAACAACCTGGGAAGATGAACACTTCTGCAAGAATCATCATTTACATGC ACTTGAATGATCTTGAGGCTAGGCCCGTATTTAATAATCTGGACAGATTAACATTTTTTTCTAGTTTCATACCTGTTTGC AACATAATGAGGCGCTAGATAGACCCTTATTAGTAAATGTGACATAGTAGACTTGTCCTCGTAAGAATGTGGAATTTGTA TCATTAAGTAATAAGTAGGAAACAGTTTGGAGAAAGGATTTAAATGGCTATGATGTTGTGAATTTTCATTTGCATTGCAT TACAAATCTTGGTTTGCAGCTGAATTGACTGCTAAAGGATTTTAGAATCATGTGTTTAACAGCTTATGTGTATGTTGGTA CAGAGGTCAGGAAGGGTTGATGAAGAGATTTCCATGCTTCATCACAAGTTGAAGCAAATTGAAGATGGTGTCACTTTTGT GGGGAGGACAACCAAACAAGCAAGATCACAAGGGAAGAAGATTCATGTAACTGCTGAGCAAGAGATATCACGGTACATAT TTTTCATCCATGCTCTTTGGTCAAGTTTATAGGCCTTGTACCCTTACTTGACATTGAACCTCTCTCTGTCTCTATCAATG TAGGATACTGGGGAACTTGGCTTGGGCTTACTTGCAGAAAGGTGACTATAAAGCTGCTGAAGAACATTATAGGTTACCTT TTTAGATGAAGTGATTTGCAATTTGATATTTTATTTTTCTTTGAATAGTAAAGTAATACTTCTATATTTTTGTTTGTCCA GAAAAGCACTGTCTTTTGAGGTTGATAGGAACAAACAGTGCAATTTGGCAATCTGTTTGATGCAAACGAACAGGATTACA GAAGCAAAATTTCTGCTCCAGGCTGTAACCACCGCTTCTAAACATAGAAAGATGGATGATTCATGCGCTAAATCTTTTGA ACGCGCTTCGCAAATGCTGATGGATATGGAGTCGTCATCGTCACAGTGCTCTCCACTAAGTAACTTGAGTGGAAAGAGCT CTGACATGGTTCAAAGTAGGACACAAAATTGGTCTGTGACATCTGAGGGGGAAGTATCTAATGCCAGGAGGAGATTGTAC GAGTCCCCTGAACCAGCAAGAAGAGACCTGAAGGTTCCTTACACAAACACAAAAAAATGTTCATGGGGCTTCAATAATGG ACCTCAAAGGGAAACTTGGGGAGATGTCCATTCAGATCCAAAACCTTCATTTGGGATTCCTTCTACACAAAATAATTTGT CTTTACCTGCCAATGGAAAGTGGAATGCGAGGACAATGGTAAAGCGTGAAGATAAAACAGCTATTGGTTCTGGACTATAC ACTTACTCCAATACAGAAACAGATAGAAAGTTTAAAGAGGACAAATTTGCTGTAGAATCAAATGACATGGTTGTGAATGG TGCCAATCAATTTGCAAGTTCTATTGGCACAGACCAAAGTAAGTGTTCTGAAATCTCTATCAAATTGTGCTGTTATCCTT TTTGTCAATTGAACAGCTCTTTGATTAATCTGCATGAACTTGCCTCAGGAAGCATAAAACCAGTGGAGAAGAAGAGCTGG GCAGACATAGTAGAAGAAGAACAAAATGAAGGGCATGACTTCTTTGGGGGATATACTAGATTTGATGGTCAGGAAGGTGC TCAAGTGTTTAATAAAGAAAATGAGAACTCAAACATAGTCTTTCAACGTCCTTGGCCGCTTAGCGAGACCAAATGTATAA GCAAAAAGCTTGAGTCCATGGACTTGAAAGATGGACATCATGGATCCGGCACTGTAATTTTGTCAAGGAAGCCAGCAGTA AGGCGCTCTCTGTGTTTCAATCCTGAACTGGCAAAGGAAAGGGATTCATCATTGTCTGAGGAGAAGAAACCACCAAGGAA CAACAGGCTGCAGGTTTTCAAGGATATCGCTCTTCACCCTGAAACCCCATGACCCTTTAGCAGTGAACAAATGTCCTTGT GGATTGAGAAGGATCCAACTGTTGCACTGTTAAGGCTTTATTGGCTTCATTATAGGACCATGGCTAGCTTTTATATAAGG CATTTTGCTGATTAGTTAGCGGATTCTTTCATTCTTAATCATTTTTTTATTTGCAAAAACAACCTTTGTAAATCCATACT CATGTTCCTATACTGTAAAATAACTTTTATCAGTTGTATTGAAACTTGAAGTTCTCAGTTTGGTTGGTGCTTTATACTCA CAGATTGTGCTTCAACTTGAATAGTTTCAAAGCAAAAGAATATACTTCTATTGGTTCCTGTCAGGACATGTTGGTCCTAA GTTGTTACAGTTATCAAATATTGATTGACATAGTACAGCAGAATGTATGAAGTGGTGAACAAATTATTTGC
CDS sequence (LotjaGi6g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATTTGAAAGAAACTCTCCGGCAAGGTGCTTCATGACGCCACCGCCGCCGCGGCTTTCTTCGTGGAGGTCGACGCC TTCACGCTCTCCCATCATGATGCCGCTTTCAGAGAGAAAGAGATCATCACCGAACAAAGATGATCCTTATCATGTGATTC ACAAGGTTCCTGCTGGTGATTCTCCCTATGTTAAAGCCAAGCAGGTTCAGTTGGTGGATAAGGATCCTGGGAAAGCCATT TCACTGTTCTGGGCTGCAATCAATGCTGGGGACCGTGTGGAGAGTGCTTTGAAGGATATGGCCTTAGTCATGAAGCAACT GAACCGTTCTGATGAGGCAATCGAAGCTATTAAATCATTCCGGCATCTGTGCCCTCCTGATTCCCAGGAATCCCTAGACA ACATCTTGGTTGAACTCTACAAGAGGTCAGGAAGGGTTGATGAAGAGATTTCCATGCTTCATCACAAGTTGAAGCAAATT GAAGATGGTGTCACTTTTGTGGGGAGGACAACCAAACAAGCAAGATCACAAGGGAAGAAGATTCATGTAACTGCTGAGCA AGAGATATCACGGATACTGGGGAACTTGGCTTGGGCTTACTTGCAGAAAGGTGACTATAAAGCTGCTGAAGAACATTATA GAAAAGCACTGTCTTTTGAGGTTGATAGGAACAAACAGTGCAATTTGGCAATCTGTTTGATGCAAACGAACAGGATTACA GAAGCAAAATTTCTGCTCCAGGCTGTAACCACCGCTTCTAAACATAGAAAGATGGATGATTCATGCGCTAAATCTTTTGA ACGCGCTTCGCAAATGCTGATGGATATGGAGTCGTCATCGTCACAGTGCTCTCCACTAAGTAACTTGAGTGGAAAGAGCT CTGACATGGTTCAAAGTAGGACACAAAATTGGTCTGTGACATCTGAGGGGGAAGTATCTAATGCCAGGAGGAGATTGTAC GAGTCCCCTGAACCAGCAAGAAGAGACCTGAAGGTTCCTTACACAAACACAAAAAAATGTTCATGGGGCTTCAATAATGG ACCTCAAAGGGAAACTTGGGGAGATGTCCATTCAGATCCAAAACCTTCATTTGGGATTCCTTCTACACAAAATAATTTGT CTTTACCTGCCAATGGAAAGTGGAATGCGAGGACAATGGTAAAGCGTGAAGATAAAACAGCTATTGGTTCTGGACTATAC ACTTACTCCAATACAGAAACAGATAGAAAGTTTAAAGAGGACAAATTTGCTGTAGAATCAAATGACATGGTTGTGAATGG TGCCAATCAATTTGCAAGTTCTATTGGCACAGACCAAAGAAGCATAAAACCAGTGGAGAAGAAGAGCTGGGCAGACATAG TAGAAGAAGAACAAAATGAAGGGCATGACTTCTTTGGGGGATATACTAGATTTGATGGTCAGGAAGGTGCTCAAGTGTTT AATAAAGAAAATGAGAACTCAAACATAGTCTTTCAACGTCCTTGGCCGCTTAGCGAGACCAAATGTATAAGCAAAAAGCT TGAGTCCATGGACTTGAAAGATGGACATCATGGATCCGGCACTGTAATTTTGTCAAGGAAGCCAGCAGTAAGGCGCTCTC TGTGTTTCAATCCTGAACTGGCAAAGGAAAGGGATTCATCATTGTCTGAGGAGAAGAAACCACCAAGGAACAACAGGCTG CAGGTTTTCAAGGATATCGCTCTTCACCCTGAAACCCCATGA
Protein sequence (LotjaGi6g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFERNSPARCFMTPPPPRLSSWRSTPSRSPIMMPLSERKRSSPNKDDPYHVIHKVPAGDSPYVKAKQVQLVDKDPGKAI SLFWAAINAGDRVESALKDMALVMKQLNRSDEAIEAIKSFRHLCPPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQI EDGVTFVGRTTKQARSQGKKIHVTAEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQCNLAICLMQTNRIT EAKFLLQAVTTASKHRKMDDSCAKSFERASQMLMDMESSSSQCSPLSNLSGKSSDMVQSRTQNWSVTSEGEVSNARRRLY ESPEPARRDLKVPYTNTKKCSWGFNNGPQRETWGDVHSDPKPSFGIPSTQNNLSLPANGKWNARTMVKREDKTAIGSGLY TYSNTETDRKFKEDKFAVESNDMVVNGANQFASSIGTDQRSIKPVEKKSWADIVEEEQNEGHDFFGGYTRFDGQEGAQVF NKENENSNIVFQRPWPLSETKCISKKLESMDLKDGHHGSGTVILSRKPAVRRSLCFNPELAKERDSSLSEEKKPPRNNRL QVFKDIALHPETP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 13 | 457 | 445 | 1.4E-174 | – | |
| PANTHER | 13 | 457 | 445 | 1.4E-174 | – | |
| Gene3D | 64 | 286 | 223 | 2.4E-18 | ||
| SUPERFAMILY | 74 | 249 | 176 | 2.47E-11 | ||
| SMART | 94 | 127 | 34 | 460.0 | ||
| ProSiteProfiles | 94 | 127 | 34 | 5.694 | ||
| ProSiteProfiles | 190 | 223 | 34 | 10.136 | ||
| SMART | 190 | 223 | 34 | 1.0E-4 | ||
| ProSiteProfiles | 190 | 223 | 34 | 9.765 | ||
| Pfam | 191 | 218 | 28 | 3.9E-7 | ||
| MobiDBLite | 541 | 573 | 33 | - | – | |
| MobiDBLite | 541 | 559 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0269500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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