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LotjaGi6g1v0275200.4

Overview

Field Value
Gene ID LotjaGi6g1v0275200
Transcript ID LotjaGi6g1v0275200.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cysteine desulfurase family protein; TAIR: AT1G08490.1 chloroplastic NIFS-like cysteine desulfurase; Swiss-Prot: sp|Q93WX6|CNIF1_ARATH Cysteine desulfurase 1, chloroplastic; TrEMBL-Plants: tr|A0A151REY6|A0A151REY6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0275200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59197312..59200917) extracted from Lotus japonicus Gifu genome v1.2.

ACCGAGGTATTGGAATCAACAATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTC ATCATGTGTTAGGCTTAGGTTCCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAAC CAAGTATTGGCTCCCCTTCTCTTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGTATCTATGTATAACAAG CCTTAATTCAATTGTCTCATTCTTAACTAGCCTATCTACAATGGTGTTGCCGAATATCGGCTTTTATTAATATACATATG GTTTTTCGTTCCTCGATTTTGTTTATGCATATACTGCGCGAAATGTGGTTTTGATGTTCTTCTCCATGGAAGAATGGTAT TTCTTATGTTGTTCTGGCACATATTGTAAATTTATGATACTTTGATTCACTCCACAGGAAGTAAATGGCTCAAAGCTTGT TTACTTAGACAATGCAGCAACTTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATT CGAATGTACACCGGGGCATACATTACCTGAGGTATTTAGTGTGTAATATTTGGAATTACATATGTAATTTTGAGACACTT TAATGTGTTTGTCTTGTCTATCTGTGATTGCATAGATTGGTTAATGCTTTTTCTTGCGTAATTTTTATGGATGTAGTGCA AAGGCCACAGATGAGTTTGAATCAGCTAGAAGGAAGGTTGCAGCTTTTGTAAATGCTTCTGATTCCAAAGAAATTGTGTT CACAAAAAATGCTACGGAAGCTATCAATCTTGTGGCTTATTCTTGGGGCCTGTCAAATTTAAAACCAGGAGATGAGGTAT TTTATTTTAGGTTAATATTTTAATGAATCTCAAAAATAATTTTTAAGAGTTGAGGAGAGTATTAGGGTCTAATTTGAACT TACCAATAGTGGTGAATTTTTTTAATCACTAAAAATCTATTCATTAACATTTGGCATATGTGTTGCCATCATATTCTTGG CATGCCCTGTAAAATCTTCAGTTTTATTATTGCAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGG CAACTAGTAGCTCAAAAAGTTGGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATT GAAAGAAATGCTCTCGAAGAAGACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGGTATGTTTCTCATCATAA TTCTTCACATTGAAAATTCTATTTTCTGAATGATACATTGAATTTATGCTCTCAAAATTGATGCACTTCCTGGATTTATT TCGTAGTTTTTTACATTAATGATCTTTTTTATTAGGAACTTCAAACCATCCCTTATATCACAAAAGGGTGATTAGGTTTC AAATCCCAATACTAGATTGTTGAGTGTTTGTCCACCTTGAAGTTAAACTGATCTTCAGGCTGAGCTTATGCTAAATTTTC TAATATTTGATAAGCATTTAAGTGTATGTCCATCTTCACCCCACTGGGACTGATGAGGGACTCCTACTTGTATAAGCATT GCACCTAGGTTCGGTCAAACTTGTACGAACATAGAATCTTTCTGAATAAATTTGTGAAATGATAATTAGTTTATAGAAAA CATTACATCCTTGATGCTTGTAAAGAGACTTTCGGACACTCATCTATCAGGGTATATCATATAAAAATATAAAATTTATA TGCTATTTCAAATTTGTAACATATTTTCCACAATCAGAGTACTTGTTACACACTTTTAGAATTTTTAGCTGAAATGGAGA AGTTTTCATATATTTGTACTTTGCTTTTCTGTAGCTTCTGTCCTCCCTATTAGAGATATTGCACATTGGGCACATGATGT TGGGGCAAAAGTGCTTGTAGATGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCCTTAATGTTGATTTTC TTGTTGCTTCTTCTCACAAGGTAGTTTTTATTACATATTTTTGTGATGTAACTCTTCCAAACTCGTGGAGTAAATTATCA AACATGTGTTTCAGATGTGCGGGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGACATCTTGTCTTCCATGCCTCCA TTCTTAGGTAAGTTATTAGCCATTGTACTTAAATCTCCCCATAAAACATGAACAGCTAATTAAAATGCTACAAAATAAAA TTGTTTACGGTCTGTTTTGGCACCATGTTAATAAGATTGTCTTTTGAAGCTAAAGTATTTTGATGGCAACCTCTGCCTTG TTTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTATGCCGAACCTCCATCCAGGTCTGTGAAC TGGTTTTTCCATCAACTCAGGCTAGCATATTGTTAGGGTTTAAATTGTCCTAATAGTAACCGCAAGTAAAAAGGGGTCAA AAGGGATAATTTTTTTTATATTTTTGTGCCTATAAAACTGGAAAACAATTGGAGGGAAAGATATTAAAAGAGCGATACGA ACCAGAATCCTTATGGATTAACAAGAAGGAGGACCTTCTTCCTAGGGAGAATCCCTTTGAAAAATATAATACTAAAGTCA CACCCTTACATAAGGAGAGTACTCCTATTTATAATAGCTAACCCTACTAAAGAAATAAATATAGACTTAACCACTAAACA TAGTGACAAATTTTCTTAACTGTTGTTGCTTATACAATCAGTTACTTGTATCTTACTAAATGAGGCATTTTGACTGTTCT AGGTTTGAGGCTGGAACACCAGCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATTGGCAT GCAAACCATACATGATTATGAGGTGAGTTGAACTTCAACTTCATAACAAATACTGCTAAAATTCAGACTAAAAGTGATGC ATGAATTTGGAATATAACTTATATGTACATGTTGGTGTAAAACTTCTTGTACGCTGTCATCCAGTCTTGTGTTGAATTTG GTCAATAAAACGTTGTCATTTTTTTACTTGCATTGAGATAAATTATATGTATATTTTGTATCAATAGGTGGAGCTGGGCA CGTATCTGTATGAAAGGCTTCTTTCAGTCCCAAATATTCACATCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCT GCCCTCTGTTCTTTCAATGTTGAGAATTTGCACCCCACTGATCTTGCAACATTTCTTGACCAACAGGTAAGAGATTAAGG ACTATCCCCAGATATGTTCATTTGCTTTGTCTCGAGACAGTTTAGTTTATACAATACACTGTCAACGCCTGAATTTAATG AAAAAAAATTAGTATAACTGATCATGTTTGAAAATTTTCTTTTCTTGAATTGCAATTAACAATGTTCCATTTCAGCATGG AGTGGCTATCAGATCAGGTCACCATTGTGCCCAGCCCCTCCATCGCTATATAGGAGTCAATGCAAGTGCACGTGCTAGCC TCTATTTCTATAACACTAAGGAGGATGTTGACAACTTTATCCAGGCCCTCCATGACACAGTGAGCTTCTTCAATTCATTC AAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0275200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTCATCATGTGTTAGGCTTAGGTT CCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAACCAAGTATTGGCTCCCCTTCTC TTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGAAGTAAATGGCTCAAAGCTTGTTTACTTAGACAATGCA GCAACTTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATGCAAAGGCCACAGATGA GTTTGAATCAGCTAGAAGGAAGGTTGCAGCTTTTGTAAATGCTTCTGATTCCAAAGAAATTGTGTTCACAAAAAATGCTA CGGAAGCTATCAATCTTATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGGCAACTAGTAGCTCAAAAA GTTGGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATTGAAAGAAATGCTCTCGAA GAAGACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGCTTCTGTCCTCCCTATTAGAGATATTGCACATTGGG CACATGATGTTGGGGCAAAAGTGCTTGTAGATGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCCTTAAT GTTGATTTTCTTGTTGCTTCTTCTCACAAGATGTGCGGGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGACATCTT GTCTTCCATGCCTCCATTCTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTATGCCGAACCTC CATCCAGGTTTGAGGCTGGAACACCAGCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATT GGCATGCAAACCATACATGATTATGAGGTGGAGCTGGGCACGTATCTGTATGAAAGGCTTCTTTCAGTCCCAAATATTCA CATCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCTGCCCTCTGTTCTTTCAATGTTGAGAATTTGCACCCCACTG ATCTTGCAACATTTCTTGACCAACAGCATGGAGTGGCTATCAGATCAGGTCACCATTGTGCCCAGCCCCTCCATCGCTAT ATAGGAGTCAATGCAAGTGCACGTGCTAGCCTCTATTTCTATAACACTAAGGAGGATGTTGACAACTTTATCCAGGCCCT CCATGACACAGTGAGCTTCTTCAATTCATTCAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0275200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVLLPKLPSFNFSITARSSSCVRLRFRRASSLSVCASTVNEAVAEPSIGSPSLGHSTRPHFPILHQEVNGSKLVYLDNA ATSQKPAVVLKALQNYYEAYNAKATDEFESARRKVAAFVNASDSKEIVFTKNATEAINLIILTVAEHHSAIVPWQLVAQK VGAVLKFVDLNQDEIPDIEKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHDVGAKVLVDACQSVPHMVVDVQSLN VDFLVASSHKMCGPTGIGFLYGKIDILSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGI GMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVERAALCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRY IGVNASARASLYFYNTKEDVDNFIQALHDTVSFFNSFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43586
11 437 427 1.3E-205 –
PANTHER
PTHR43586:SF18
11 437 427 1.3E-205 –
TIGRFAM
TIGR01979
58 434 377 9.9E-150
IPR010970
SUPERFAMILY
SSF53383
58 430 373 8.3E-108
IPR015424
Gene3D
G3DSA:3.90.1150.10
59 427 369 5.2E-153
IPR015422
CDD
cd06453
75 427 353 0.0 –
Pfam
PF00266
75 423 349 3.1E-121
IPR000192
Gene3D
G3DSA:3.40.640.10
86 320 235 5.2E-153
IPR015421
ProSitePatterns
PS00595
241 260 20 -
IPR020578

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006534
Biological process Cysteine metabolic process The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0031071
Molecular function Cysteine desulfurase activity Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0275200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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