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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276300 |
| Transcript ID | LotjaGi6g1v0276300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|G7IFV4|G7IFV4_MEDTR SBP (S-ribonuclease-binding protein) family protein; Found in the gene: LotjaGi6g1v0276300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59321889..59324628) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGAAAGGTTAGGAATCCAAATTCTAAAATAAGTGAAAGTAGAAAAAACCATTAAAGTAAATCCTATAGGATACAGAC CAAAATCTGACAACACTCTTTTTATTTTTCCCCAAAAAAAGAGGTAAAGTGAATATAATTAAATTGAGTTGTTTATTTAT ATAATTAATATTCTCCATAAATAAAGATGGTGAGATTTTCTCTGTCTAGAAAAGATGCGTTTGACTTTCTATCTCTTATA AACGCCCACAAAAACCAAAGCCATAAATAAGCATGAATCATTCATTCATTCATTCAGTCTCTCCCTAATACTCAGCCACA TCTATTGCATGCTCTGCCTCATCTCCTTCTTATTCTCTCCTTCTCCCCTTCAATCAACACAACACAACTTGAATTTCATG GCAGTTGAAGCTTCTTGCATGAATCTCTTGCCTTCTCATCTACTCCCCAACAGGTATATCGCCTTAAACCAACAACTCTG TGTATGTTTGGATACAAGAGTCGAAATCACGGCAGACAGAAACAACTTTTCTTAATTTTTAGGATTGTTCAGTGTGAATT TGGCTTTACTGTAGTTTTCTGTCATGTATCTGAACATGCACTCTTTGTACATGTCTTATTTTTTAAGTTTTTAATTGTTA ATTTGGATTGTTTTCAAAGATTGTCTATTAACATGTTTGGTTCTTTGTTTTTGTGCAGAGAAATAATCAAATCCAATCAC CAACAACAACAACAACATTATCAACATCAAAATCTCTTGAATTTGGATATATACAACAATGCACAAGTAGACTCTGCTTC TGCTCTGCCTATGCCTGGAGCAACAATGGCTGAATCTCTTTTACCTTTCTACCAATCCAATGTTTGTGATCCAAACACAG CAGATAGTGGTCTCACCTACAATCTCCCTCTTCAAAGAAAACGCTCAAGAGAATTCACCTCTGAATTAGCCTCTTTCCCT GCTCAACAGAAGAACAAGCTCTCATCAGAATCATCATTTTTTGACCAAGTTCTCTACCAATTCCAGAACCAGCAATCTGA GATCGATCGCGTCCTTGCTCACCATGTAATTTCCCAACTCCTATTCAATTCAACATTTTTTTTTTTGCAAAAGTAATTTC AGTTTGTGTTAGAAAAAGAACTGTTCAAACGGTTCCAAGCATGAAAGCAAAGTAACTGCTTTGTCTTGAAAAAAATTAAA GGGTGTTTTATATTTTTATGAAATGAAATCAATTTTGTTAATTTTCAAACTTTGACTGGCAGTAACTGAAGAGGGTGTGA TAAATTTTCAAACATCTTCTTAAAAAAATTGAAGGGTTGTTTTATATGTTTATGTAATTAGTTAATACTCTGGTGTTGTT AATTTTTATATTAAAGGGGATAAATTTTCCAACTTTGTCTTATAAAAATTAATTAACGGGTTTTTTATATTTTTAATATG TAATTAATAATTATTTGTTTGTATTTCTGGGCAAAATGAATAACTGAAAAGGGAGTTACAAAAGTTCAAACTTTGTCTGG AAAATATTAGTGGGGGTGTTTTTTTTAATAGATTTTGTCAAGTGGTAAATTAAGAAAAATCTGATTCACAAACTAATTTG TACAAATTAATTTTAACATATAAGTTATACTATATTATAAATAATAATCTGGAACAGTTTTTAACGTGATTGACCACATA ATTGCCGTTTTTTTTATATGTATATATAGTCTTGTGTGATTAATAATTTTTTCTTTCTATGAACAGACAGAGAAAGTGAG AATGGAGATGGAGGAACATAAGATGAGGCAATCAAGGATGTTGGCATGCGTAATCCAAGAAACAGTGGCGAAGAAGCTAA AGGAAAAGGACGAGGAGGTTCAGAAAATGGGGAAGCTAAATTGGGTGCTTCAAGAAAGGGTCAAAAGCTTAAGTGCGGAA AATCAATTCTGGAGGGACCTGGCACAAACCAACGAAACCACCGCCAACTACCTCCGCAACAACCTCGAACAGGTCATGGC CCACGTGCGGGATGGCCGCCATGCCGCTGCCGCGGTGGCTGAAGATGCTGATTCCTGCTGCGGGAGCAATGTTGTGGCGG AGGACGGCGAGGACACGGCGGCAACGCCGACGGTGAAGAGGATGTGTCGGAGCTGCGGGGTGAAGGAGTCGGTGGTGCTG TTGCTGCCATGCAGGCACTTGTGTTTGTGCACGGCGTGTGGGTCCACTGTCCGAAATTGCCCTGTTTGTGATTCCGGCAT GGATGCTAGCGTGCATGTTAATCTCTCTTAGGAGCTGTTTTCAAATTACGGTCGTCGTTGCATCACCGAATTGCGGATTA ATGCGCCCTCAATCCCGATCAAGGACTCCAAATCTTGTTGAATTGCGGCCATTGCGAACCTCAATTTGAAACCCTGTGTA GGAGGATTTTAGTTACAGTTTAGGTCATCATCAGAAATTGGACAAAATAGGTTTTTTTTAACTTTCTTTTTTGTCAAAGT GACATAGCTAGAACAAAAAGAGAAAAAAATGAAATAGCAAAATATTTTGTTATACAGATTATTATTGTTTCTTTTTTCCC ATCTTATTTATATGATATTTTTTATTTGTTTCACAATTAAGTATTCTCATATTAGTTATGAACATTTCAAAATTAGGTTT ATTACCTCAAATAGGTTTTTGGTAATAAGGATTATTATTAGAAAAAGGAATTCATTTGAATGCCAATAATGCATGTTTTT CTCATAATGAATAATGCGTG
CDS sequence (LotjaGi6g1v0276300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTGCCTCATCTCCTTCTTATTCTCTCCTTCTCCCCTTCAATCAACACAACACAACTTGAATTTCATGGCAGTTGA AGCTTCTTGCATGAATCTCTTGCCTTCTCATCTACTCCCCAACAGAGAAATAATCAAATCCAATCACCAACAACAACAAC AACATTATCAACATCAAAATCTCTTGAATTTGGATATATACAACAATGCACAAGTAGACTCTGCTTCTGCTCTGCCTATG CCTGGAGCAACAATGGCTGAATCTCTTTTACCTTTCTACCAATCCAATGTTTGTGATCCAAACACAGCAGATAGTGGTCT CACCTACAATCTCCCTCTTCAAAGAAAACGCTCAAGAGAATTCACCTCTGAATTAGCCTCTTTCCCTGCTCAACAGAAGA ACAAGCTCTCATCAGAATCATCATTTTTTGACCAAGTTCTCTACCAATTCCAGAACCAGCAATCTGAGATCGATCGCGTC CTTGCTCACCATACAGAGAAAGTGAGAATGGAGATGGAGGAACATAAGATGAGGCAATCAAGGATGTTGGCATGCGTAAT CCAAGAAACAGTGGCGAAGAAGCTAAAGGAAAAGGACGAGGAGGTTCAGAAAATGGGGAAGCTAAATTGGGTGCTTCAAG AAAGGGTCAAAAGCTTAAGTGCGGAAAATCAATTCTGGAGGGACCTGGCACAAACCAACGAAACCACCGCCAACTACCTC CGCAACAACCTCGAACAGGTCATGGCCCACGTGCGGGATGGCCGCCATGCCGCTGCCGCGGTGGCTGAAGATGCTGATTC CTGCTGCGGGAGCAATGTTGTGGCGGAGGACGGCGAGGACACGGCGGCAACGCCGACGGTGAAGAGGATGTGTCGGAGCT GCGGGGTGAAGGAGTCGGTGGTGCTGTTGCTGCCATGCAGGCACTTGTGTTTGTGCACGGCGTGTGGGTCCACTGTCCGA AATTGCCCTGTTTGTGATTCCGGCATGGATGCTAGCGTGCATGTTAATCTCTCTTAG
Protein sequence (LotjaGi6g1v0276300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCLISFLFSPSPLQSTQHNLNFMAVEASCMNLLPSHLLPNREIIKSNHQQQQQHYQHQNLLNLDIYNNAQVDSASALPM PGATMAESLLPFYQSNVCDPNTADSGLTYNLPLQRKRSREFTSELASFPAQQKNKLSSESSFFDQVLYQFQNQQSEIDRV LAHHTEKVRMEMEEHKMRQSRMLACVIQETVAKKLKEKDEEVQKMGKLNWVLQERVKSLSAENQFWRDLAQTNETTANYL RNNLEQVMAHVRDGRHAAAAVAEDADSCCGSNVVAEDGEDTAATPTVKRMCRSCGVKESVVLLLPCRHLCLCTACGSTVR NCPVCDSGMDASVHVNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 16 | 7 | - | – | |
| Phobius | 17 | 338 | 322 | - | – | |
| PIRSF | 23 | 338 | 316 | 7.4E-69 | – | |
| PANTHER | 24 | 337 | 314 | 3.0E-160 | – | |
| PANTHER | 24 | 337 | 314 | 3.0E-160 | ||
| Gene3D | 272 | 338 | 67 | 1.9E-10 | ||
| Pfam | 288 | 327 | 40 | 2.7E-8 | – | |
| ProSiteProfiles | 291 | 326 | 36 | 8.816 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0276300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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