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LotjaGi6g1v0276800.1

Overview

Field Value
Gene ID LotjaGi6g1v0276800
Transcript ID LotjaGi6g1v0276800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin depolymerizing factor-like protein; TAIR: AT5G59880.1 actin depolymerizing factor 3; Swiss-Prot: sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2; TrEMBL-Plants: tr|I3SI08|I3SI08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59377995..59380908) extracted from Lotus japonicus Gifu genome v1.2.

GGAGGAAGAAAGTATGGAAGGATGGGTACCTTTGATGTAAAGAGATATATACAAGTTGCGTGAGGTGGCAGCGGCGATTG GGCCATTCAACACGCGCTGACTGCGACTATTAATAACTTGACGCTTCCACCACACCACACCATACCATACCATACCCTCT TTTCTCTCTCTGCGTCTCCGATCGAGACTCGAATCAATTCCTATATCTCCTCCACCGTCATCGCTTCCGCTGAAATCAAT CTCCAACCAACCACCATGGTCAGTCTCTCTTCTCTTCTTACACATCTTCCTCCAATTTCGTTCTCGCTTTTCAACTATTT TTCCTAATTTCTAGTCTACTGGTAGCTTAATTTCGCCGCTATTTTCACCTCTTGATCTGATCCAACTCTGCATTTTTTTC GATTGAGTTGTTCTGTTCTCCAATTGATCGCATGCTTGCTTGCTTTGATCGTTTCAACAGCTTGTGATTTGATCTGTGAG GGTTTCCAGTTTCCTGATCTAACATGCTGCTTCAATTTCTTTGATGTTGTGGTTATTATTATTTTTATTTTTATTTTTAT TATTGGGGCTGGGAATTTTTTGATTAAAATTATATTATTTTTATCAGATTTAATTTTTGGTAAAGTTTATTTTTAGGTTA TGAGGAATTATAATATGATATTATTTTTAGCTTGAACATGACATGGTGTTTTATTCTGATGTTTACTTATTTTAGCTATT TGTTTATGTCCTGATTATTAAGATGATTCTATGCTTGTATAGGTAATATTTACTTTGTTAGTTGGAGACATGTTGTTATA ACATTGCAAATTTAATATATTCAAAATGTGCAATTTTGATATGTTAGAGCTATATTATTAGGACATGTTTGGTTTACATT TCATTTTCTGTTTATTCAATTTTAATTGCAAACAGCTATGCTTTCATTTCCAAAGGTTGTTGTTTAGGGTGTGTTTGGAT TCTCCCAATGCATAAGTTGAGTTTCATTCCCTTGTGCTAACAAATAGTCAAACACAGCTGATCTTTCATGTTCCTATAAC ATTGTATTACTCAACATGTACAATTTTTAACCTCTTCGAGCTTGGCTATTTGGGCATGTTTGGTTTCCATTTCTTTTGCC GTTTTCATTTTTATTACAAACAGCTACTTTGTTTTCATTCTATTTCTTATTTTCAAGGTTTTGTTTTGAATCTGTTTGGG TTCGGAATCCATTTCCGAACGGATATCCGAACATAATCTGGTCTTTCATGTAAGCTTTGAAAATAGGAAATTTATGTGGC AAATAGAACATGGAAGCCTAAAAGGGAAATAGAAACCAAACATGTCTTTAGTTCTCTCCCCACTTTCTCTTTTCTCTTAC ATGTGCCTGCCAAGTGCCAACCGCTCTACCATATTAACAATGCATTAGCTTATTTGTGCTCGATCACATGGGATCACTTG ATGTGCTTTTTCATTGCATTGATGACTGTGATGTGTCTGCAATTGCAATTCTTATAGGCCAATGCAGCATCAGGCATGGC AGTCCATGATGACTGCAAGCTAAGGTTTATGGAGCTCAAGACAAAAAGGACATATAGGTTCATAGTTTATAAGATTGAGG ATAAGCAAGTCATTGTGGAGAAGCTTGGTGAGCCAGGACAAGGCTATGAAGATTTCACTGCTAACCTTCCTGCTGATGAG TGCCGCTATGCTGTTTATGATTTTGAGTATCTGACTGAAGGAAATGTCCCCAAAAGCAGGATTTTTTTCATTGCATGGTA ATGTTTACTTTTTGGGATCTGCTGAATGCTTTTCATGCTATGTTTTTATATGCATTGATTTTGTTGTTTTTCTCTGCAGG TCGCCTGATACATCAAGGGTGAGGAGCAAGATGATTTATGCAAGCTCCAAAGACAGATTCAAGAGGGAGTTGGATGGAAT TCAAATTGAGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTCTTTAAAAGCCGTGCCAACTAAATTGTTATAA ATAGTAGGCTTTCTGGTGGGGAGCTCCCCTTGAGCCTTAGTTCTCTCATATGGAAATATCCATAGTTTGTGGGATATGGT CAACTTGGCTAGTTATGTCTTAAAACTCTCAATTTTCCAAGTTGTGGCATAAAGTTTACTGCACATTTGACAAGCTTAGC TTGATCCAGCTTATTTTATTATGACTTGTGATTTATACAATCCTTGTGTTTGAGTGGCATTTTTGGCCTCCTATCCTTGT TGAATTTGGAATCGTTTTTGTGAGCAGTTACTTGCCTGTTTTTGGTTTGTTGGAATGAGATCATATGATGTAGGTTGGTT GTTCTTGCTCAAATCCAGATTACTCTTGTATCACTCGTTACAGCAGATTGGATCATTTTCTCTTTTGTCACAATCAATCC TGAGATTGAGAAGCTACTCACACATGGTTCTCTCCATAATTGATTCTGCCTACAATTGAATTTTAGAAGGTTTCTAAACA TGAATTTTACAGTTTATGTAGCTCGTGTTTTGTGATACTGCCATACTGGCATGATCATGCAGAACGCTTTTAGCTATTGT GCCATCACTTCATTTTCTTGTAAGACCTCTAACTTGTTGAGAGACCTAGGCGGTTATTTATGTTATAGAAACTCTCGTAA TACAAGTGAAAACTTGACAAAATGGTGGTGGCGTAGTTCTGGGAAACCAATACATGAGATGACACAAATCAAAGGATTGA TAGTAAGATTTCTTTCTTCCATTTCTAGCCGGTGTAGCTTTAATCAAATAATCTGATGTTCTCTATTAAAGAGATAGGAA TGAATGATAAAATGAGTGAGTGATGTGACAAGAAAAAAGAGAATAATAAGGAAGTTAAATGAAGTAGAAATAAGATGGAA GAGAAAATGGGATGTGAATAAATAAAAACTCTTC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAATGCAGCATCAGGCATGGCAGTCCATGATGACTGCAAGCTAAGGTTTATGGAGCTCAAGACAAAAAGGACATA TAGGTTCATAGTTTATAAGATTGAGGATAAGCAAGTCATTGTGGAGAAGCTTGGTGAGCCAGGACAAGGCTATGAAGATT TCACTGCTAACCTTCCTGCTGATGAGTGCCGCTATGCTGTTTATGATTTTGAGTATCTGACTGAAGGAAATGTCCCCAAA AGCAGGATTTTTTTCATTGCATGGTCGCCTGATACATCAAGGGTGAGGAGCAAGATGATTTATGCAAGCTCCAAAGACAG ATTCAAGAGGGAGTTGGATGGAATTCAAATTGAGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTCTTTAAAA GCCGTGCCAACTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0276800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPADECRYAVYDFEYLTEGNVPK SRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.20.10
1 137 137 3.6E-49
IPR029006
PANTHER
PTHR11913:SF74
2 137 136 3.4E-108 –
PANTHER
PTHR11913
2 137 136 3.4E-108
IPR017904
SUPERFAMILY
SSF55753
3 136 134 6.54E-43 –
ProSiteProfiles
PS51263
5 137 133 35.713
IPR002108
CDD
cd11286
6 136 131 5.2635E-65
IPR017904
SMART
SM00102
12 137 126 9.6E-54
IPR002108
Pfam
PF00241
14 134 121 9.0E-35
IPR002108

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003779
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Subterm of
GO:0015629
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Subterm of
GO:0030042
Biological process Actin filament depolymerization Disassembly of actin filaments by the removal of actin monomers from a filament.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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