Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276900 |
| Transcript ID | LotjaGi6g1v0276900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0276900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59381445..59385565) extracted from Lotus japonicus Gifu genome v1.2.
GTCATTCTCATTTTCATGTCATCGAAACGTGAGTGTAGTGTTTTCCAGCCCTTTTCCCTTCCCTCCTCTATTTTTCACCT CATCCAAACACAAACACAGCGTTACAGTGATAGTCCCCATCCGACAAACCTTAACACAATTTCCACAAAATTGGATAACT CCTCTCTGCCACAGCAGGATTTTTCCTTACAACAAATTCAAGTGACCGATTTCTAACGCACTCGTCGCGCCGTTCCAGGT AATTTCGTTTGCTTTTCGCCTGTCAAATTTCGCTGGCTCTGGTTCTGGACAATGCAAGTGCCGATCACCTTATGGATTCT GTTAATGCTCCTGATCTATTGGAAATTTGGAATGACCCATTGATTTACAAATGGGGGATTTCTGTTTAATTGTCAAAATG CATATGTGGATTGTGCCTACTTTTGCTGATTTTTTTAGGAGTAGTCTATGTGTTATGCTTAGTTTTTCATTTCCTGCTAT GTTTCACTATATGGTGTTCAAAGAGGAGTTGGAATTGAGATATATAGTGCAGGATTGGACAATTGTTGTTTTTGGGTTTG TTCTTGCAGTTACAGTTACAGGAATATGGTCTTCTCTAGTGGATATTAATTCTTGCCCCTAAGTCTTTATTAGATAATGA AAATATCTTCTTGTTACCAATTACTTCATGGGCTTGATGCTTTCTGGATGTAGCATAGGAGGTTTTGGGGTTAATTGTTG CTCAAAAAACTTGGTCATGCTTTGTGCATGTCCTTATCAATTACAATTGATGCAAGTCACTAATTATTTCACTGTATTGT ACTGCATATTCCAGATCATTCGGCAGTCGCTACTTATTCTTCACGAAGGGGTGATTAAGTCAGATATTGAATTTTGGGAA TGGACAAGGTTGTGGAGGAGGTGGAAAAGGTGAAGAGGGAATGGGATGAGGCTTGCGGCAAAACACAACTCCACATCAAG GCAATTGCAGACTACGGAAAATCAGGAAGACCCAAGGATGAGATCAACTCGCTTGCCAGGTTGAATGGGATGGCTCAAGA TGGCTTGGCGCTCCTTTCTTCCTTGCATTTCACCCTAGATCTCCTCGCTCCACAATTGCCCACCGAAAAGGAGGTTGAAT CTGCTCGTGTCCTGCTCGAATCCTGGAAAACCCTGACTCAACAGTACCTACCCTCTTTCTCTCTCTGATTGATATAAAAT AGTTTATTTAGTAATGAATTATGAGTTGATAGTATGCATATGTGTTTTAAACAGTTTGCGGCTAAGTCTGAGGAATGCTA ATCTGCAAGCCAAGGCTAACTTAAGGAAAGCTGCTCAGGAAGAGGTAATTTGCTTCTTCTTTTTTATCCTCAACTACTTT GCTATTCATATTGAATACTTTATAATCATTGACTGAGAACATGTTAATTATATCATGATCATGTATGTGTGTGATTTGTG CTTGTGCTTCATTACATTGATGGGTTGGATTGTGAATTTGTGACGTGACGTGTTTCATATTTCTATATGATGCAGAGAGA GCTACTTCTAGGTGGTGGAGAAGAGTCTACAGTTCGCAGACGCAATTTGCAGTATGTCCTTTGTGCCATATTATGATTTC CTTGTTTATTTTGCTTTTAGTGCCATTTGATGGGAAAATTCAGTTAGCATGATATGATTGATGCCAGGATGAATTATTCT AGTTCTCAAATTTGTGATTTTCTTCCAGGACAAAAGCGGGAATGACATCTGCTGCAGAGAGCATCACAGATAGCCTTCGT CGTACTCGTCAATTGATGGTTCAGGTTAGTAGTTAGATATCTTTCCTTTCTAAACTTGTTGTAATATTTTGTTTCATTAT TGCTCCTTTGTACTCCTTCATAAAATATGACCCTTTCATGTTGGGCTGATTAGCATTCTCATTGTATATCTGTAGGAAGT CGAAAGAAACACAAGCACACTTATGACTCTTGGTAGGTACATTTTCTTTTCTCTCCTCTCTTTATATTGATGATGGTTCT TTCATCTTTCTGCTTCCTTCTTTAATTTATACTGTTATTACAATTTCTTTTTGGTGTATGTGAAATTTATATGAAGAACA AAGGAAAATGAACTATAAAAATAATAATAAGCCGTCTGATCGGATTAAGTATGCTGGCAGCTATTATATGTGTTGCTTCT GGCAGCTCAGTGTCCTAATTTTTTATGTCCTCTTTTTTATTTTATTTTGAAAGCTTATTATGAAATTAATGAGATTGATC ATCCCTGTAAAAGTCTACCACCCTTTTTTTATCACTAGCAAAATGTAGCAGACTGAATAGAAAATATCTCTTAGTAAATT GAAAGAGTTGATTAAAACCCAATTGATCCTCAGGTTGGTGGAATGATATGTGCTTGGATTATGACCTTTATGGTAATGCT GAAGTTTAAGCCAGCCAGAAATGAAAATAACCTGTTTCAACTTTGACCCTGGCAATTTTTTTTTTAGTTTCAACAAGTTT TCAGAACTCTTTCCATCCAAATGACTGAATTTGACGTGGCTCATTGTTAGGTACCAGAAAAATAGTAGAGAAGGGAATGA GCTGAAATGCTATAGTATTGAGTTGTTCTGGAATTCTGAGATGAACCCAACTCAGATCTAGTTTAGGGAAATACAAGAAG AAAACTGATACAAGGCAAATTAGAGTAGAAAGTGCCTCTATCTCTCCCAATTCCCAGCCTAAACCAATCCTGCCCTCCCC TCTCCCCATTTCCCCCTCTTTCACAACCAACTCAGTTACCACAGGGACCCACTCCCTACTGCCTGCTCAGCATCAGTTAG GCTCCCTTCCATGTGTTTATTAAGTGCATCACACCTCCACTTCTTCGTACATTAAGCTAAGTGAACTTGGCCCTTGCAAT TGGGTCCGCATCACTCATGCTCAATGAAGCATTAAGTAAAGATGCTTCTCTTTGTTGCTGTTTGTGCTAGAATGCTTGTT AGTACTCGAGCAAAATGATATTAGTTTTTTCTTGATGGATTGAATGACATTAGATTTGATGGATTGATATTTATTGATGT GATTACGAGGGAACAACTTTGTTCTGAATATTTGTTTTGCAAAATTGCTTGGATACACAGATGAATCAACTGGGGTGTTA AAAAAGGCTGAAAGTGAATATAAAGGGCACCGCTCATTGTTGATGAGAACACGAAATCTGCTCTCTACAATGCAACGTCA AGATGTCATAGACAGGTATGGAAATAAAAAAGTTAACGGATTTTGATGTCCACCCTCTTTGTTTGGTCTTCCTATTCCTA TATCCTAGAAATTGACTCATAACTTGTCTTCAAACAGGGTGATAATCGGGCTTGGCTTCTTATTGTTCTCCCTTGCGGTT CTTTATGTTGTTTCAAAGCGGATCGGACTACTTACGTTGCAGAGAAAGGTTACTGAGGCCATAAAGGCTGGTGTGGTGGG GCAGGCAGATCTAAGACCCCAAGCTGTTGCAGATGATATGAATCTTCATCAAGTCAGAGATGATCATGTTCACAATACAG AGGCTCCTTTAGAACAAAGAATTCATGATGAACTTTGATGCATTTCTAAGGAATAGTATCATCTTTTATCTTACAACACA ATTTTAGCATCCTAGATTGCTTAAGAATGAGAAAGTTAAAGTACATACTATCTTGAGAGTTCAACGTAACAGACATTTGA TACCTTATATTTAGAGTAATTAGGAGGTCTATTGAATTGATTGATTAGGATGCTATAGAAAATTTCTGTGTAGTAATTTT ATTTGAGCTGCCTTTCAGCATGTGCAGAAGAGGTTTCATACATCTTGACAGAGTGCAAATGTTTGGAGAAGTTTTTAGCA AGAACATCTTGTCTCTTGCTTGCTTTTTCGATGTTGGACATGTTTGTTTCTGACAGACCAGCTATCTTTAAGATCTGAAT TATGAACTTTTATGAGTCATTATATATTTTTATGGGCGTGTAGTATGATTTCCATGACATACTTATCGAATATCCAAACT TGTGGTACAAGTGAAGTTCACATGCATTGAATGTGAAATCATTAGACTCAGTTACAAACATGATTACAAACAAGTTGAAT GTAATGAGAGGATTATTTTTATTTAAGAGTTTGGAGAAGTA
CDS sequence (LotjaGi6g1v0276900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGTTGTGGAGGAGGTGGAAAAGGTGAAGAGGGAATGGGATGAGGCTTGCGGCAAAACACAACTCCACATCAA GGCAATTGCAGACTACGGAAAATCAGGAAGACCCAAGGATGAGATCAACTCGCTTGCCAGGTTGAATGGGATGGCTCAAG ATGGCTTGGCGCTCCTTTCTTCCTTGCATTTCACCCTAGATCTCCTCGCTCCACAATTGCCCACCGAAAAGGAGGTTGAA TCTGCTCGTGTCCTGCTCGAATCCTGGAAAACCCTGACTCAACATTTGCGGCTAAGTCTGAGGAATGCTAATCTGCAAGC CAAGGCTAACTTAAGGAAAGCTGCTCAGGAAGAGAGAGAGCTACTTCTAGGTGGTGGAGAAGAGTCTACAGTTCGCAGAC GCAATTTGCAGACAAAAGCGGGAATGACATCTGCTGCAGAGAGCATCACAGATAGCCTTCGTCGTACTCGTCAATTGATG GTTCAGGAAGTCGAAAGAAACACAAGCACACTTATGACTCTTGATGAATCAACTGGGGTGTTAAAAAAGGCTGAAAGTGA ATATAAAGGGCACCGCTCATTGTTGATGAGAACACGAAATCTGCTCTCTACAATGCAACGTCAAGATGTCATAGACAGGG TGATAATCGGGCTTGGCTTCTTATTGTTCTCCCTTGCGGTTCTTTATGTTGTTTCAAAGCGGATCGGACTACTTACGTTG CAGAGAAAGGTTACTGAGGCCATAAAGGCTGGTGTGGTGGGGCAGGCAGATCTAAGACCCCAAGCTGTTGCAGATGATAT GAATCTTCATCAAGTCAGAGATGATCATGTTCACAATACAGAGGCTCCTTTAGAACAAAGAATTCATGATGAACTTTGA
Protein sequence (LotjaGi6g1v0276900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKVVEEVEKVKREWDEACGKTQLHIKAIADYGKSGRPKDEINSLARLNGMAQDGLALLSSLHFTLDLLAPQLPTEKEVE SARVLLESWKTLTQHLRLSLRNANLQAKANLRKAAQEERELLLGGGEESTVRRRNLQTKAGMTSAAESITDSLRRTRQLM VQEVERNTSTLMTLDESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGLGFLLFSLAVLYVVSKRIGLLTL QRKVTEAIKAGVVGQADLRPQAVADDMNLHQVRDDHVHNTEAPLEQRIHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 292 | 292 | 1.1E-96 | – | |
| Phobius | 1 | 213 | 213 | - | – | |
| PANTHER | 1 | 292 | 292 | 1.1E-96 | ||
| Coils | 100 | 120 | 21 | - | – | |
| Pfam | 144 | 235 | 92 | 7.8E-28 | ||
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 214 | 232 | 19 | - | – | |
| Phobius | 233 | 292 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of LotjaGi6g1v0276900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…