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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0277400 |
| Transcript ID | LotjaGi6g1v0277400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA glycosylase; TAIR: AT4G26030.1 C2H2-like zinc finger protein; Swiss-Prot: sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP; TrEMBL-Plants: tr|A0A0B2S7Q6|A0A0B2S7Q6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0277400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59424547..59427998) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAATCTAATTCCCAAGTAATTGCCAATCTTCTGGTTGGAGCCATACACCAGAATGGAGGAGTTAGAAAAACCACCAC CTTGTAACCCAAATTGCAGCAAACCAGAGAGTTCTCCGTCGTCAACATGGTTCGACATGGAACTTCCACTGCCAACTACT ACATCCTCAGAAACAGAGCCATTTCGACTGGACCAAGCTGTGTGCAGCCATGGCCTCTTCATGATGGCACCCAACAGCTG GGACCCACTCTCCAACACCCTCACTCGCCCACTGCGTCTTCACGACCAAGACACCGACCCTTCTTCTTCTTCGCCGTCGT TCATCGTTACAGTTTCTCAGCGCTCCGAATCCATCGCCGTCAGGGTTCATCATGGGACCCACTTGCTCTCCCCTCACGAA GTTCGCGCCTTGATGGTACCAACCTCCTTAACTGCCTCTTTGAATTCGTGGGTATTCATCGGAAAATTGATTTCTGTTGT TCTGTTTCGTTTTAGGCTCAGGTGTCGAGAATGCTGCGATTTTCCGAAGCGGAAGAGGAAGCTGTGAGAGGGTTCAGAAG CATGCCCCTTGATCATCACAATAGAAGCTTTGGTGGGAGGGTGTTTAGGTCTCCCACATTGTTTGAGGATATGGTGAAGT GCATTCTCCTCTGCAACTGCCAGTGAGTTATGCTCACTATGTGTTTGACATAATGCCTAAGCATGGTGATATAATAATTG AACCCAAAACTTTATAATCATATCCTTATCATTGTAATTATTACTATTGTAATTACTATGTTGAACTTGTTCTGTTGATA GTATTAGGACCCGTTTGGTAGAGCTTATTTGAGCTTATCTAATAACATAAGCGTTTATGTCAGTGTTTGGGAGAGCTTAT GCAAACAGCTTAAGGCCTATGAAAAAGAGCTTATGCTTATTTATAGTTTATTTTCAATTTATTCCAATAAAATTTTTAAA ATAGCTTATGAATAAGCGCTTATGTCCTAAGCTGTTTTTCCAAACGGGACCTTAATGGCTTAGAAAAGCTTACACTTCGG TTCTTTTGTTGATTCTGGTGTATCTTTTGTTCTTTGTGTGATTTGTTTTCATTTTCAAGTGATAACTTATGAAAACTTTC AGGTGGCCAAGGACTTTGAGCATGGCTCAGGCGCTTTGTGAGCTTCAGCTGGAACTGCAAAAAGGGTCACCTCATGATGC TGTTGCGGCCTCGGGCAATTTGAAAGTTAAGACCAGTGATTTCTCCCCCAAGACACCAGCTGCTAGAGAGACAGGGAGAA AGGGTGTTAATTCGTCTGGTGTTTCGAGAAAAGGCATGTTTGTGAAGAAGAAATTGGAGTTTGAACGGGATGATATTTCG CAAATGGATCATGTGTTGGAATCTCGTTCGAATGCGGCCTTGCTTCCAACAGATATAAATGGCAATGCAGGTCATGGTTG TAACTCTTGTCAAGCCACAGAAGAGCTTGATTCAGATGATACTTTCCCTGATGGAAGAGAGTATTTTAACCGCACTGGAA ATTTTCCATCCCCAAGTGAGCTAGCGAACCTTGATGAGAGTTTTCTAGCAAACCGATGCAAACTTGGGTACAGAGCAAGT TATATAATAAAACTTGCCCGAGCCATTGTAGAAGGCAAAATTCAATTAAGACAACTTGAAGAACTCTCCGAAGGCGCAAG CTTATCAATTTATACACAACTTGATGATCAGCTGAAGCAAATTAAGGGGTTTGGCCCTTTTACTCGTGCCAATGTTCTTA TGTGTATGGGGTATTACCATGTCATTCCAACTGATTCTGAAACTATTAGACATTTGAAACAGGTGCTGTGTTCTTGATTT TCCTGTCTAATTTTGTCTTCCCTTTATTTATAAACATATTTGATATGCATGAGATGAGTTAATGCAGGTTCATTCAAGAA ACTCGACCTCTAGAACAATTGAGAGAGATGTAGAAGAAATTTATGGAAAGTATGAGCCCTATCAGTTCCTGGCCTACTGG TAAGTAACTATGTAGCCAAATCTACAAACTACCTTTATGGCTTTATGTTCTCAAGAACTGTCTTTATGCTCTAATGTTAT AGTGTCTTTGGGATTTTATAAAGGATCTCATCAATCAATGCGAGTTTCCTCACTCAGTTCTACCTATGAATATGATCAGG TCTGAAATATGGGACTTCTACGAAAGAAGGTTTGGGAAGATGAACGAAATGCATTCTTCTGAATATAAACTTATAACCGC TGCTAATATGAGAAGCGCGGGTAAAAGCCCAAGTAAGAGAAAGAGAGCAACCTGAAAGTGCCAATGATGCAGTCCTCTCC ACATGTGAGTTCAATTTTTCTTTTTGAGATTATATACCTACTAGAACAAGCTGCTTGGGAATCATTTAGAAGAAATTTGT TCGTTTGAGACCAATGAGGCTGAAAGTAACAGCAGTTTGATCAGGAAAGCTCACTTGCAAACTTGTTAAACAATTGAAAG GGATTCGATATCTCATTTCAATTTCTGGGCTACGGTGATAGCAGCAAACTGTTGTCAGCGGACTTGACAAAAGTGCACCG AAGATCACTGTTATTTTCTATAACAGTGATCAAAAGATAATCGAGAAAGCAGTATTTGAAATCAAATATACATGATTTGT ATCAATAAAAAAAAATACATGATTTGTCAATAAATCTTTCCTTAAATAGATATTCTACTGGGAATCTTATGAAACTCATC ATAAACCACATTTTTTTCAGAACCAAGTATTCTACCAAGGACTGGGACTGGGAGTGAACCACAAACTTCGCCATAACTGT TTTTCTAAGGAAAGATTGCTATTTAATGGTTGAATTGTCTTTTCCTTTAAATAGAAGACCCCGAGACAAGGGTTAATGAG GTGATGAAGCGAGAAAAAAACACAATTGTCTACTCCGATGAACTTTGGTGGGGCATTAAGGTTTGCGGTGGAGATAACTC GAACCCCAGCGCGATCCACAAATAAGACACGACCACTCAAACTATGGACCTCTATCCATCTTGGGCCACTCATGTCCAAC TTAAAGATGAGAAAGTCTTCTATCTCATAGTCATGGCTCATGTACTTGCATCTGAAAAGAACTAACAACACTTCCCCACA CGTAGGGTCTCTTGCCAGCCTATGCATATTTACTCTTTCTCCATCACTATCAAGCTTTGGTAACTGCATAACCAACCTTT CAGCCGTAATGGCATTGAGATCTTCAAGATTGAAAATAGTCACAAAATCTTCATTCATAGCATATAATTTCCATCCAAGA AGCATTATATCCTTGACTTCAAAACGTGACTCAATTGTTTCAATGCGAGACCATGACTTGTCATTGTCGACCCTGCAAAA ACAGAGCTGTGGGATCGATCCATCTTTATCATCAGCAGAATATAAAGATATCACCACCAAATAGCTTTGAGAAGAGAAGG CAACTCTAAGAT
CDS sequence (LotjaGi6g1v0277400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGTTAGAAAAACCACCACCTTGTAACCCAAATTGCAGCAAACCAGAGAGTTCTCCGTCGTCAACATGGTTCGA CATGGAACTTCCACTGCCAACTACTACATCCTCAGAAACAGAGCCATTTCGACTGGACCAAGCTGTGTGCAGCCATGGCC TCTTCATGATGGCACCCAACAGCTGGGACCCACTCTCCAACACCCTCACTCGCCCACTGCGTCTTCACGACCAAGACACC GACCCTTCTTCTTCTTCGCCGTCGTTCATCGTTACAGTTTCTCAGCGCTCCGAATCCATCGCCGTCAGGGTTCATCATGG GACCCACTTGCTCTCCCCTCACGAAGTTCGCGCCTTGATGGCTCAGGTGTCGAGAATGCTGCGATTTTCCGAAGCGGAAG AGGAAGCTGTGAGAGGGTTCAGAAGCATGCCCCTTGATCATCACAATAGAAGCTTTGGTGGGAGGGTGTTTAGGTCTCCC ACATTGTTTGAGGATATGGTGAAGTGCATTCTCCTCTGCAACTGCCAGTGGCCAAGGACTTTGAGCATGGCTCAGGCGCT TTGTGAGCTTCAGCTGGAACTGCAAAAAGGGTCACCTCATGATGCTGTTGCGGCCTCGGGCAATTTGAAAGTTAAGACCA GTGATTTCTCCCCCAAGACACCAGCTGCTAGAGAGACAGGGAGAAAGGGTGTTAATTCGTCTGGTGTTTCGAGAAAAGGC ATGTTTGTGAAGAAGAAATTGGAGTTTGAACGGGATGATATTTCGCAAATGGATCATGTGTTGGAATCTCGTTCGAATGC GGCCTTGCTTCCAACAGATATAAATGGCAATGCAGGTCATGGTTGTAACTCTTGTCAAGCCACAGAAGAGCTTGATTCAG ATGATACTTTCCCTGATGGAAGAGAGTATTTTAACCGCACTGGAAATTTTCCATCCCCAAGTGAGCTAGCGAACCTTGAT GAGAGTTTTCTAGCAAACCGATGCAAACTTGGGTACAGAGCAAGTTATATAATAAAACTTGCCCGAGCCATTGTAGAAGG CAAAATTCAATTAAGACAACTTGAAGAACTCTCCGAAGGCGCAAGCTTATCAATTTATACACAACTTGATGATCAGCTGA AGCAAATTAAGGGGTTTGGCCCTTTTACTCGTGCCAATGTTCTTATGTGTATGGGGTATTACCATGTCATTCCAACTGAT TCTGAAACTATTAGACATTTGAAACAGGTTCATTCAAGAAACTCGACCTCTAGAACAATTGAGAGAGATGTAGAAGAAAT TTATGGAAAGTATGAGCCCTATCAGTTCCTGGCCTACTGGTCTGAAATATGGGACTTCTACGAAAGAAGGTTTGGGAAGA TGAACGAAATGCATTCTTCTGAATATAAACTTATAACCGCTGCTAATATGAGAAGCGCGGGTAAAAGCCCAAGTAAGAGA AAGAGAGCAACCTGA
Protein sequence (LotjaGi6g1v0277400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEELEKPPPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDPLSNTLTRPLRLHDQDT DPSSSSPSFIVTVSQRSESIAVRVHHGTHLLSPHEVRALMAQVSRMLRFSEAEEEAVRGFRSMPLDHHNRSFGGRVFRSP TLFEDMVKCILLCNCQWPRTLSMAQALCELQLELQKGSPHDAVAASGNLKVKTSDFSPKTPAARETGRKGVNSSGVSRKG MFVKKKLEFERDDISQMDHVLESRSNAALLPTDINGNAGHGCNSCQATEELDSDDTFPDGREYFNRTGNFPSPSELANLD ESFLANRCKLGYRASYIIKLARAIVEGKIQLRQLEELSEGASLSIYTQLDDQLKQIKGFGPFTRANVLMCMGYYHVIPTD SETIRHLKQVHSRNSTSRTIERDVEEIYGKYEPYQFLAYWSEIWDFYERRFGKMNEMHSSEYKLITAANMRSAGKSPSKR KRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 16 | 40 | 25 | - | – | |
| PANTHER | 23 | 482 | 460 | 2.8E-170 | – | |
| PANTHER | 23 | 482 | 460 | 2.8E-170 | – | |
| SUPERFAMILY | 162 | 442 | 281 | 7.01E-16 | ||
| MobiDBLite | 214 | 236 | 23 | - | – | |
| Pfam | 305 | 427 | 123 | 7.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. |
Expression pattern of LotjaGi6g1v0277400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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