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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0278100 |
| Transcript ID | LotjaGi6g1v0278100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66500.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY9|PP448_ARATH Pentatricopeptide repeat-containing protein At5g66500, mitochondrial; TrEMBL-Plants: tr|A0A0L9VE64|A0A0L9VE64_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59494781..59496979) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTGTGAGTTTGATCGTAACCAAACAGCTAGAAGGATGTCGGTGCGTGCTGTGGCACGGCCATTACCGTTGAACTCT CTTCATATTCCCTCCGACCAACTGCTACGACAAGACATTTCCCATCTCAACTCCCTCATCACCTCCCATGTCCGCCGTGG TGACCCTTTCTCCGCCTGGAGCCTCTTCCGCTCTCTCCGCCGTCTGCGTTCAGACATCGATGCACATACCTTCACCCCTC TCCTGCGTCCATCTCCTCTCTTACTCGTCCCCCAACTCGGTAAACATCTACATGCCCAGATGGTTAGAACCGGTGCGGAT TCTGGGACCGTGGCGAAAACCGCACTGTTGAACATGTATTCACGATATGGGTCTTTGAGTGAGTCCATCAAGGTGTTTGA TGAAATGGGTCACAGAGATGTTGTTGCTTGGAACGCTTTGCTTTCGTGTTATTTACGGTGGGATCTTCCTGGTGAGGTGA TTGGTGTTCTCAGGGAAATGGGGAGGGAGAATGTTGAGATCAGCGAGTTTACTTTGTGTTCAGTGTTGAAATGTTGTGCT TCTTTGAAGGCGGTGGAGCTTGGTAGGCAGGTTCATGGTTTGGTGGTGTCTATGGGGCGTGACTTGGTTGTTTTGAGCAC TGCTCTTATTGATTTTTATTCCGGTGTCGGGCGTGTTGATGATGCTTTGAAAGTTTTCTCTAGTTTGAAGGGTTGGAAGG ATGACATGATGCATAATTCATTGGTTTCTGGGTGTATTAGGAATAGAAGGTATGCTGAGGCATTTGAAGTTATGAGCTTG GTGAAGCCCAATGCTGTTGCACTCACTAGTGTTCTTGTGGGTTGCTCTGAGAATTCGGATTTGTGGGCAGGGAAACAGAT ACATTGTGTTGCTCTTCGTTGGGGTTTTACTCTTGAGACCCAACTATGCAGTGCCCTGTTGGACATGTATGCGAAATGTG GGAATATTTCGCTTGCTCGGTCACTGTTTGATGGAATCTGCCACAAGGATGTTATTTCCTGGACTTGTATGATTGATGCA TATGGAAGACATGGGCATGGGCATGAAGCTGTTGAGCTGTTTCGGAAGATGAGGGAGGATGGAAGCAAGGTGTTGCCAAA TTCTGTGACTTTTTTGGCTGTCTTATCAGCTTGTGATCACTCTGGACTAGTGGAGGAAGGCAGAGAGTGTTTCAATTTGA TGAGGGAGAAATATGGTCTTGAACCAGACCCGGAGCACTATGCATGCTTCATAGATATCTTAGGACGAGCTGGTAATATA GAAGAAGTATGGTCTGCATATCACAACATGATTGAGCAGGGTACTAGGCTTACTGTGGGAGTGTGGATAGCATTGTTGAA TGCTTGCAGTCTCAATCAGGATGTTGAAAGAGGTGAATTTGCTGCAAAGAATCTCTTGCAGTTGGAACCCAATAAAGCTA GCAATGTCGTGCTTGTATCCAATTTTTATGCAGCCATTGGTAGGTGGGATTGCGTTGATGAAGTGAGAAGCATCATGAGG ACAAAAGGATTGGTCAAGGAAGCTGGGAATAGCTGGATCAGTAGTGATGTGGGATTCAATCTACATGCCAGGTCACTAAC TGCTTGATTGTTCACCTTGACAATTGGTAACTAGAGATTTTCCTGCTACTGGGTGATTCCTGCAGGAAGGACAATTGACC CAGACAATCGGAGTGCGCACTTCGATCCACTCTGCGCTTAGGAATTCGAGTGACATTGACTGAACTTGGGACGCTTCGAG CCTTCGATCTCTTCATATACGAAGAGATACGAAACAGACCAAGGGACACACTATCTAACCTAACCCCTATACACTATATA TTCTTGGTAATTTGAGCGTTAGAGTGTCTTCCGCCAGCAGAATGCATCACATTCACACGAACGTCGGATGAGCAGCTACT AAGCATGAAGCAACCTCCAAGCAGGGAGCATCACCACCATTGTCACCACTATATATGAAGAGTTACACTCGACTTGTAGT TAATAATTGAGTGAAGCTATTCTGTGCGAAGAATTAATGCAAAAACAAAGAGGAATATGCTTTCAACCAATCAAATTGGT TTTACATTTCGCCGAATAATCTTCGTACTAATTAGGATTTTCCTTAATAGTTAATTCCTTTAATTAAACTAATTTACTTT GTTTTCCTCTTGTAACTAAAAAAACTAATTTACTTTTTA
CDS sequence (LotjaGi6g1v0278100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTGCGTGCTGTGGCACGGCCATTACCGTTGAACTCTCTTCATATTCCCTCCGACCAACTGCTACGACAAGACAT TTCCCATCTCAACTCCCTCATCACCTCCCATGTCCGCCGTGGTGACCCTTTCTCCGCCTGGAGCCTCTTCCGCTCTCTCC GCCGTCTGCGTTCAGACATCGATGCACATACCTTCACCCCTCTCCTGCGTCCATCTCCTCTCTTACTCGTCCCCCAACTC GGTAAACATCTACATGCCCAGATGGTTAGAACCGGTGCGGATTCTGGGACCGTGGCGAAAACCGCACTGTTGAACATGTA TTCACGATATGGGTCTTTGAGTGAGTCCATCAAGGTGTTTGATGAAATGGGTCACAGAGATGTTGTTGCTTGGAACGCTT TGCTTTCGTGTTATTTACGGTGGGATCTTCCTGGTGAGGTGATTGGTGTTCTCAGGGAAATGGGGAGGGAGAATGTTGAG ATCAGCGAGTTTACTTTGTGTTCAGTGTTGAAATGTTGTGCTTCTTTGAAGGCGGTGGAGCTTGGTAGGCAGGTTCATGG TTTGGTGGTGTCTATGGGGCGTGACTTGGTTGTTTTGAGCACTGCTCTTATTGATTTTTATTCCGGTGTCGGGCGTGTTG ATGATGCTTTGAAAGTTTTCTCTAGTTTGAAGGGTTGGAAGGATGACATGATGCATAATTCATTGGTTTCTGGGTGTATT AGGAATAGAAGGTATGCTGAGGCATTTGAAGTTATGAGCTTGGTGAAGCCCAATGCTGTTGCACTCACTAGTGTTCTTGT GGGTTGCTCTGAGAATTCGGATTTGTGGGCAGGGAAACAGATACATTGTGTTGCTCTTCGTTGGGGTTTTACTCTTGAGA CCCAACTATGCAGTGCCCTGTTGGACATGTATGCGAAATGTGGGAATATTTCGCTTGCTCGGTCACTGTTTGATGGAATC TGCCACAAGGATGTTATTTCCTGGACTTGTATGATTGATGCATATGGAAGACATGGGCATGGGCATGAAGCTGTTGAGCT GTTTCGGAAGATGAGGGAGGATGGAAGCAAGGTGTTGCCAAATTCTGTGACTTTTTTGGCTGTCTTATCAGCTTGTGATC ACTCTGGACTAGTGGAGGAAGGCAGAGAGTGTTTCAATTTGATGAGGGAGAAATATGGTCTTGAACCAGACCCGGAGCAC TATGCATGCTTCATAGATATCTTAGGACGAGCTGGTAATATAGAAGAAGTATGGTCTGCATATCACAACATGATTGAGCA GGGTACTAGGCTTACTGTGGGAGTGTGGATAGCATTGTTGAATGCTTGCAGTCTCAATCAGGATGTTGAAAGAGGTGAAT TTGCTGCAAAGAATCTCTTGCAGTTGGAACCCAATAAAGCTAGCAATGTCGTGCTTGTATCCAATTTTTATGCAGCCATT GGTAGGTGGGATTGCGTTGATGAAGTGAGAAGCATCATGAGGACAAAAGGATTGGTCAAGGAAGCTGGGAATAGCTGGAT CAGTAGTGATGTGGGATTCAATCTACATGCCAGGTCACTAACTGCTTGA
Protein sequence (LotjaGi6g1v0278100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVRAVARPLPLNSLHIPSDQLLRQDISHLNSLITSHVRRGDPFSAWSLFRSLRRLRSDIDAHTFTPLLRPSPLLLVPQL GKHLHAQMVRTGADSGTVAKTALLNMYSRYGSLSESIKVFDEMGHRDVVAWNALLSCYLRWDLPGEVIGVLREMGRENVE ISEFTLCSVLKCCASLKAVELGRQVHGLVVSMGRDLVVLSTALIDFYSGVGRVDDALKVFSSLKGWKDDMMHNSLVSGCI RNRRYAEAFEVMSLVKPNAVALTSVLVGCSENSDLWAGKQIHCVALRWGFTLETQLCSALLDMYAKCGNISLARSLFDGI CHKDVISWTCMIDAYGRHGHGHEAVELFRKMREDGSKVLPNSVTFLAVLSACDHSGLVEEGRECFNLMREKYGLEPDPEH YACFIDILGRAGNIEEVWSAYHNMIEQGTRLTVGVWIALLNACSLNQDVERGEFAAKNLLQLEPNKASNVVLVSNFYAAI GRWDCVDEVRSIMRTKGLVKEAGNSWISSDVGFNLHARSLTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 22 | 194 | 173 | 8.5E-25 | ||
| ProSiteProfiles | 26 | 60 | 35 | 7.574 | ||
| Pfam | 30 | 55 | 26 | 0.038 | ||
| PANTHER | 30 | 185 | 156 | 5.9E-89 | – | |
| ProSiteProfiles | 96 | 126 | 31 | 7.377 | ||
| Pfam | 101 | 126 | 26 | 0.0098 | ||
| Pfam | 127 | 174 | 48 | 3.7E-8 | ||
| ProSiteProfiles | 127 | 161 | 35 | 9.328 | ||
| TIGRFAM | 129 | 162 | 34 | 3.9E-4 | ||
| PANTHER | 165 | 275 | 111 | 5.9E-89 | – | |
| Gene3D | 195 | 280 | 86 | 2.5E-10 | ||
| ProSiteProfiles | 196 | 226 | 31 | 6.127 | ||
| Pfam | 201 | 224 | 24 | 0.28 | ||
| ProSiteProfiles | 228 | 262 | 35 | 7.947 | ||
| Pfam | 232 | 253 | 22 | 0.14 | ||
| SUPERFAMILY | 268 | 464 | 197 | 1.9E-6 | ||
| PANTHER | 277 | 493 | 217 | 5.9E-89 | – | |
| Gene3D | 281 | 373 | 93 | 3.3E-21 | ||
| ProSiteProfiles | 293 | 323 | 31 | 6.621 | ||
| Pfam | 297 | 319 | 23 | 0.16 | ||
| Pfam | 323 | 372 | 50 | 3.5E-10 | ||
| ProSiteProfiles | 324 | 358 | 35 | 12.211 | ||
| TIGRFAM | 326 | 356 | 31 | 2.3E-8 | ||
| ProSiteProfiles | 361 | 391 | 31 | 8.133 | ||
| TIGRFAM | 363 | 397 | 35 | 0.0021 | ||
| Gene3D | 382 | 496 | 115 | 1.5E-6 | ||
| ProSiteProfiles | 397 | 431 | 35 | 9.35 | ||
| TIGRFAM | 401 | 431 | 31 | 3.0E-5 | ||
| Pfam | 401 | 428 | 28 | 0.15 | ||
| ProSiteProfiles | 465 | 500 | 36 | 5.393 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0278100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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