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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0279500 |
| Transcript ID | LotjaGi6g1v0279500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59624271..59630378) extracted from Lotus japonicus Gifu genome v1.2.
CATCATTCCATGATAATTTACCATCATTTTTTCATATATTTTCCACAACAACCCAAGCTGCAAAGTGCAAACCAAGACCA TAATTTGGAAAAAGAAAAAGAGATGTTAAAAAACAAAAAGAAGAGAAAAAGTGGTGAATTGATATGAAACAATACATTGG CAGCAGTGGCAGTGCTGTTGAGTGTATCATATCATGTGAATCTCTCCCATCTCTACCCTTTTGCTTTCTTCACCTCACCT CACACACAATCTACATCCATTTGCAGGTTAAGAAGAAAGGACACAGTGATGTAGACAGAGAGAGACAGCAATAATAAGAG ACACAACACCCTTAAAAATTTGGTCTTTTATCTTTCTCCTTTCTTCATCAAAAAGAACAGAAAGGGACAAGATCCCCGAA AGCCGTGCCTTCGTCACACCCAGATTCAGTTTTCTTTCGTACGGTGCGCTTTCCCCCCAAAGCTTGCTCCTTTTTTCATC TTCACCCTACCCTGATTCTAAAGTTTTCATCTTTAGCTTCTGGGCTTCTTGGGTTTTCTCTTGTTTTTCTTCTCCATTGA AGCAGCAGCAGAAGAAGAAGAAGGATGTATCCGAGGCTCATACACCCCCATGAAGGGATGATTGGCCATGACGGTGGGGG TGTCCCTAACCACAAGGGTGACCCTTGTCTTGTTTTGACTGCTGATCCAAAACCTCGCCTTCGTTGGACTCAGGACCTCC ATGAACGATTTGTTGATGCTGTCACCCAGCTTGGAGGTCCTAGTAGTAAGTCACTCTCTCAATCATTTTTCTTTCTTGAA TATTGTGATGATCTTTATCTATGGAATTAGTTTTGTTTCACAAGAGCAATTGGTCTTTGCTTGGTATGCATGTGTTTTGT TTTGACTTTTGTGTTTAAGCAATTGTTTGAATTTTGGTATATGGGCTGCAAGATGCAATGAGTAGAATTTATTTTGACAA TGTAGATGGAGAATGCTTTCCTGAGCAGGCAAGTAGCGAGAAAATGTTTGTTTGTTTGACTTCTGAATGACAATTTTGAC TTAAGGCCATTATCAGTGGGTTCTGAGTTTGATCACACAATATGAAGGTCCCGTCTGGAAGAGTTTATTTGAGTTTATCT TATAATTATAATTTAAGTGAGTATGCAAGTGTTTGAGACTTGGGAGAGCGTATGTAAATAGCTTATAGCCTACCCATAAG CTCAAAAGAGCTTATTTTTGTAAGTTGTTCAGATTAGCTTATGAATAACAACTTATGTTTATCCATAACCTATTTTAATA AGTTTATCAAATTAGCTCATAAGCATTTATTGCAATAACGCTTACCCAACCCCACACAAATTCTATTGAAGAATTTTAAA GAGTCCATCATTGAACCTTACGCCTCTCATTTGTTGATGTGCTGAATCTTTTTATTGTTGACTAGGCAGGTTTATGATTT ATTTGCTGGATGATTTGATTTGATATTCGTGAGGGAGCAGGGCAATGGCAGGGATGCCAACTCTTTTAGATTCTTTAGTT GAATCTTTCTGTGATACGAAGGGGAAGTTGCTTCCCTTAGGAAAACAAAGCAAGTGATTATTGTTTCCAGCCGTTGTGTC ATAAACTGTGGCCGAAGTATACCTGCTTGGTTCCTTTTTCAGTTTTTCGCTTGATATTGAGAGGTTGAAACTCGTTGAAT TGCTAGTATTAGAAAGTATTGTACAGGTACGTAGACGCAATTAGTGCAATAAAGTTAGGAATTTGATGAGAGTGTCGGGT GTCAAATACGGCGTGGAAGCAGTCTTGGTGTTAGGATCTTTGTGCAAAATTATCTTCATTTGGCCAAGCGGTTAAGCTGC CACTATTTAGTTTTGGAGCCTTTCGAATGGGATAAAACCTATAATATGTATCTAATTTTTTTTTTCTTTGGTTTTAGAGT TTTTGTTATATAATTCCACTGCACTTTCACGATGGAACCTTATTTAGATTTTTGTGGACCTTTTTTAAAAGGATGGACAT TAAGAAAATTGAAATTGGAACATAGTTGATTTAAAATTGAGTTTGCTTAGTTATTGTTAAGTTAAGTATATTAATGACTT TTGAAATGATGAAAGGGGTATTTTTGAAATTACTGGGCGTAACTCATTAAAATTGATTACATATAAATTGTAGGGATTTT CTTACAGGGTTTTCAATTGGTGCTGTAGCAGCCGTTACCTATAGCAGCAGAATGAAGCTTTGGTGGAGAGCTTTACTGCT GTAGGAAGCAAAAATAGTTGTATTTGCTTCATGTATTGTAAATTTGTAATCGGAAACATATTTGATACCAACTGCGTTGG ATACTTCACCAATACTTATTTGTGAAATATCCAAGCCAAATCTTTTCTTCTTTACAATTATGTTTGTTGAGTAATTGTAA TTTCCTCTAGTGATAGTTTTATTTCGAAAATAAAACCCACATCATCCAACTGAAACCCCCATAGTAGATTTATGAAGTAA TGTCTAATAAGTATGTTCTTAGTTTGAATTTTTAGATTTGCAATTTTATGTTTATTATGTTTTATGAATCCTTTTATTAC ATATCCTAGATATATCATGATTTTAATAAGTATGCATTGACAGTGTAAAGAAATTTACATAGACGTCCAATTACATTTCT CCATTTTACCTTTTTGTCTTTTTTAAATTTTAATTTAATTATGATGTGGCAAAATGGTGAAATTTAATTGGATGTCTATG GAAAATTTATTGGCACTTTCATAGTATTGTTATTAAACCCATATATCATATCCTGTATAATTTTATATTTTTTGTATCTG CATTAGGTATCATTTTTTATATTCACATCATATTTGTGCATTACCGCCGTTGTGTCTTGAGGCTACAAAGTGCAATAGCA TATATGTACCCGATACTCATATTGTATCTATGCATTGTGCATCCTTGCTCTCATGTCTTGGAGTACTGCAAGATGCAATG GCAATCATAGCAGCCATTATTTTTTATGGAGCTTAATTTTCTTATTAAACCTCATTTGGGACTTTAGGTACATTAATGCC AGCAAATGGTGTTGTTTGTGTAGTTGTTCTCCTTTTTGTTTTCTTCCATATATATTATTATATCAATGCATCGCTGCTAG TTGTTTATGTTTTCTAATTTTGTTCAGTTTTACTTTTACTGCTATGCCCATAATTTAGTTTATCCTAATCTGTGTTTTTT ACAGTAATTCCTCTGTTTTTGTTTTTGCTCTTCATCAGTTATGTTACTCTTTTTTTTTGTCAAAACAGTTCAATTATATT CTCAAATGAAATTTTGACATCAAAATAGTTCAAAAGTTATTGGGAGTAAATTGACATCATTTGACCATAACAAACAATGA TCATTTCAGGATCAATTTGACCATACCATTTTTTTTTTAAATTTCAACAACCAAATTGGTTTCCAAAAATCTTTTGAAGG TTGGATTGGTAGTTTACCTTTTTCAAATCCTATTATAGTTTTAAAATTAAACTACTACTATTATAAACATGTGGTTTTTA CAAAAAATTGAAGTTTTCTTCTATACATTTCATTAAAACTTGACCTATCTTTAAAATGATAAGTCATTCAGTTCACAGTT TATTAGTTTAACCATGGTCAATTGGTGGTATTAGTTTTTTTTTGAAGTATATAATATTTAAATCAATATTATATTGAAGT ATATAATATTTATAAAGCATAAGAAATTGGTATCTTAGAGCTGGCATCCTTATGTACAGTTATGCCAGTGGCATGTAGGG TTTCAAAGAATGGTGTGTGATATTATGATTTATCTATTTCACCCTCAGCCCAAACTACATGCTGTTTTCTTGTTTTTATG GGAATTCTAACACAGCAGGATGCTTTTCCATGAATCTATAAGCTGTCAAAGCTGAAATAATTTTGTCTCAATATATTATT ATTTGGCCTTCTTTTCTGTTGAGCTTTATGAACGATACCTAGCTTGACTTTTTCTTGTATGCACAGTAGCTATTGAAGCT TACTTTCTACTGCTCATCTAGCTCCCGTTGAAATTTTCATGCGTAAACTATCAGCAATATCATTTTCTGACTAGGTTCTG GATGTTATCTGCAGAAGCTACACCGAAAGCTATCATGCGGACCATGAATGTCAAGGGTTTAACTCTGTTTCATTTGAAGA GCCATCTTCAGGTCTATTCCATTCTTTAATAATACCCTGCCCAATTTTAAACTTTGCAATGAAATTGAAACCTTTTCTTG CTGTATTGCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATTTTAGTGAGGGATGCAAAGATGGTATGGTTGTCATT CCCCTTTGTGGACTTTCCAATCATGGTCCCGTCATCTGATTTTGTTTTGTCCAATTTGTTCTGTGGCGTCTTTCGCCTTT CCCCAGAGAATAAGTATCCGTTTGGATGCAAACCAAAGAGCATTTATTGGAGCTTATTTGTGCATTTTCTAGTAGATAAG CTCCAATAAACCCGTATCCGGACGGGCTATGTCCACCTGGAATTTTAATCTGTATAACTTATGAACCATTCCATAATGGC ACAACTGCTGCTTAGGTTATATTTTGATACAGTTCCCATTGGGGGAGCATATTAGCCTGATATTAGAAAACTGGATAAAG ACCATTTACGGTTAACACATTAGTTGCTCTTTGAATTTGAACAATGATTAACCATTCTTTTTTTACTATGGATTGTCGTT CTTAAATTGGAAAGAATTTTGCCAGGACCTCCTAAATTGTAATTTTAACTAAACTTTTTGTTTTTTTATTGGCTTCATCT AACAATTTAAAAATTTATGGAAGGTATATCAGGTTCATATCTTTTAGAAAGCCCTGGTTCTGATAACCCTTCTCCAAAGT TGCCAACATCTGATACAAACGAGTAAGGATTTTCATTTAACAAAGACTTATCTTCTTCTTGCAAATGTTTCAGTGGTTTT GACTTACCTAATTGAGGGGGTTATTAATTTTATGTCTAGGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAG TGCAAAGTAAACTACATTTGCAAGTGGAGGTATATTTCATTTCCGTAGTGCAAGTTGTGTACCCTATATAGCTTTGGTGA TTATTTTACCATATTTTCCTAACAAGTGTTGTTGAAACAAGTTGGTGCTTGTTACTTCTGTTTTGTGACATTATTAAAAG ATTCTATTGGAATGATTACTAGATAATATGTGCTGATTTAAAAAAATATCACACTGCAGGCCGAGAAGCACTTGCAGATT CGCCAGGAAGCGGAGCGGAGATACATGGCCATGGTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTAGCGCTAC AGTTACAGACACTGATAACCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCTTGGTTGATCATCCTGGTT TTTACTCCTTGCCGTCGACTGAGGCGGCTGGAGTGAGTGTTCCCGAAGAAGAAAGACCTCACAATCTCCCATCCCAAAGA GCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAGAGTTCTGGGGGATTGGTCTTAGAAGGATCTCCAAGTGAGGG GAGAAGAAGGATGCTGGGAATGGATTCTTTTGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAAAACTCAAGCCATCA ATCTAGCCCATGGTAATTCTCATGGAATATCTAGGTATGGCATGTAAGGGTTGATGGTAATTCTCAAATTGATGGTGCAT TCTCTCATAATTAGAGGCACCATTGAGCTTCTTTCCTTTTCATATAGGTACTTGAACTATGGTCTCTTCATGACTTGTAA GTTTTAAGTTAATGGGAACAAAGGGGGAATCAATTTTAGCCATTTTGTATATTTAAATTAACTATGGGGTTTAAAACATT GCAAAAACCAAAAAGCTATCTTTGACTATACAAAAAAGAAGTTTGTTTTGGTGATTATTATTATGGATTTTTTATTGCTT ATTGCATCATTCTGAATAGAGCGGTCTTCTCTCTTGCTTCAATATAGTAGTAGAGTCATCTTAGGGAAACTCTTGAACCC TTTCAGAAGCGTTGAACTTGCAAAAGCC
CDS sequence (LotjaGi6g1v0279500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCCGAGGCTCATACACCCCCATGAAGGGATGATTGGCCATGACGGTGGGGGTGTCCCTAACCACAAGGGTGACCC TTGTCTTGTTTTGACTGCTGATCCAAAACCTCGCCTTCGTTGGACTCAGGACCTCCATGAACGATTTGTTGATGCTGTCA CCCAGCTTGGAGGTCCTAGTAAAGCTACACCGAAAGCTATCATGCGGACCATGAATGTCAAGGGTTTAACTCTGTTTCAT TTGAAGAGCCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATTTTAGTGAGGGATGCAAAGATGGTTCATA TCTTTTAGAAAGCCCTGGTTCTGATAACCCTTCTCCAAAGTTGCCAACATCTGATACAAACGAGGGTTATGAAATCAAGG AGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCCGAGAAGCACTTGCAGATTCGCCAG GAAGCGGAGCGGAGATACATGGCCATGGTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTAGCGCTACAGTTAC AGACACTGATAACCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCTTGGTTGATCATCCTGGTTTTTACT CCTTGCCGTCGACTGAGGCGGCTGGAGTGAGTGTTCCCGAAGAAGAAAGACCTCACAATCTCCCATCCCAAAGAGCTGAT TGTTCAACTGAAAGTTGTTTAACCTCACATGAGAGTTCTGGGGGATTGGTCTTAGAAGGATCTCCAAGTGAGGGGAGAAG AAGGATGCTGGGAATGGATTCTTTTGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAAAACTCAAGCCATCAATCTAG CCCATGGTAATTCTCATGGAATATCTAGGTATGGCATGTAA
Protein sequence (LotjaGi6g1v0279500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPRLIHPHEGMIGHDGGGVPNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFH LKSHLQKYRLGKQSGKDFSEGCKDGSYLLESPGSDNPSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQ EAERRYMAMVERACKMLADQFISATVTDTDNQKFQGIGSKAPRGSLVDHPGFYSLPSTEAAGVSVPEEERPHNLPSQRAD CSTESCLTSHESSGGLVLEGSPSEGRRRMLGMDSFAAPLIWSEAKMKTQAINLAHGNSHGISRYGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 306 | 285 | 4.8E-185 | – | |
| PANTHER | 22 | 306 | 285 | 4.8E-185 | – | |
| Gene3D | 32 | 94 | 63 | 6.3E-27 | – | |
| ProSiteProfiles | 33 | 93 | 61 | 10.341 | ||
| TIGRFAM | 36 | 91 | 56 | 3.0E-24 | ||
| SUPERFAMILY | 36 | 92 | 57 | 1.22E-16 | ||
| Pfam | 39 | 89 | 51 | 2.7E-6 | ||
| MobiDBLite | 95 | 126 | 32 | - | – | |
| MobiDBLite | 111 | 125 | 15 | - | – | |
| Pfam | 131 | 176 | 46 | 9.6E-16 | ||
| MobiDBLite | 222 | 241 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0279500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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