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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0279700 |
| Transcript ID | LotjaGi6g1v0279700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|I1L073|I1L073_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0279700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59643358..59645851) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATTTAATGGAGACTTTGGAGGGTTATTTAGCCTTAGTTTTAAAGACTCTAGTGATGAAGATGGGTGTCTGTTACC ACCATCGCCGCCGCGTGTTTTCGCAATGTCAGCCCATTTTTCGTTTCCTGAGGAATTTCACGGCTTCAATTTCCATTTCA CACGATTGGTCACTCCGCAAACGTAACGTCGAGATAACTATTCTGGGTCGCCGCGGAAAGCTCAAAGAAGCAAGGAAGCT GTTCGATGAAATGCCTCAACGAGATGCTGTTTCCTACAACTCCATGATCGCCGTTTATCTGAAGAACAAGGACGTACACG GGGCTGAAACGATATTCAAGGCAATGTCCGAGAGAGATGTTGTTGCTCAGTCCGCAATGGTTGATGGGTATGCTAAAGCT GGTCGCTTGGATAATGCACGCGAGGTGTTTGATAATATGACTGAGAGAAATGCGTTCTCTTGGACCAGTTTGATTTCTGG GTATTTCAGGTGTGGGAGAACTGAGGAGGCTTTGCAGTTATTTGATCAAATGTCTGAGAGAAGTGTGGTGACTTGGACTA CCATGGTTTCTGGTTTTGCTCAGAATGGATTGGTCGATCATGCTCGCAGGTTCTTTGATCTCATGCCTGAAAAGAACACC ATTGCTTGGACAGCTATGGTGAAGTCATATCTTGACAATGGTCAATTCAGTGAGGGTTATAAGCTCTTCCTTGAAATGCC TGAAAGAAATGTTCGTTCGTGGAACGTCATGATCTCAGGTTGTCTGAGTGCCAATAGAGTGGATGAGGCTATACATTTGT TTGAAACAATGCCGGATAGGAATCATGTTTCATGGACGGCTATGGTTTCGGGTTTGGCTCAGAACAAGATGGTTGAGGTT GCAAGGAAGTATTTTGATATCATGCCTTTTAAAGACATGGCAGCTTGGTCTGCAATGATCACTGCATATGTTGATGAGAA GCTCCTTGGTGAAGCTCTTGAGCTTTTCAACTTGGTGCCGGAGAAAAATGTTGGGATTTGGAACACAATAATTGATGGTT ATGTAAGGAATGGTGAAGCAGGGGAAGCCTTAAGGCTCTTTATTTTGATGCTGAGATCTTGCTTTAGACCCTGTGTAACC ACTATGACTAGCATCATCACCTCCTGTGATGGCATGGTGGAGATCATGCAAGCTCATGCAATGGTCATCCATCTCGGGTT TGAGCAAAACACTTGGGTAACAAATGCTCTTATTACTCTGTATTCCAAAAGTGGGGATCTTTGCTCTGCCATGCTTGTTT TTGAGCTTCTAAAATCAAAAGATGTAGTGTCATGGACTGCAATGATTGTAGCCTATGCAAATCATGGACATGGTCACCAT GCATTACAGGTATTTGCTCGCATGGTAACATCAGGAACTAAACCAGATGAGATCACCTTTGTGGGACTCTTATCAGCATG TAGTCATGCTAGTCTTGTCAACCAAGGTAGAAGAGTGTTTGACTCAATCAAGGGTGCCTATAATTTAAATCTCAAGGTTG AGCACTATTCCTGCCTTGTAGATATGCTAGGTCGAGCAGGACTTGTGAATGAAGCAATGGATGTAGTATCAACTATCCCT CCTTCTGAGATCGATGAAGCTGTTCTTGTAGCATTGCTTGGTGCCTGCAAGCTACATGGGAATATTAAAGTAGCAAATTC AATTGGCCAGAAGCTATTAAGTTTAGAGCCGACTAGTTCAGGGGGGTATGTGCTACTATCCAATGCATATGCGGCAGAAG AGCAATGGGATGAGTTTGCACAAGTAAGGAAAAGAATGAAGGAGAAGAATGTGAAGAAAATTTCAGGATTTAGTCAAATA CAAGTAAAAGGAAAAAATCATTTGTTTTTTGTTGGGGAAAGATCTCATCCCCAGGTTGAGGAAATTTACGGATTTTTGCA ACAGAGTCTTCAACCTTTGATGAGGGAAACGGGTTATACACCAGAGAACTCATTGTTAATAGATACTTTTCACAATTAAT TTAACACTAACCAGAGTTATATATGACAAAAAGAAATTTACTTCATTTACCGGTTACAAGGATGCAAAGTTTAACTTAAA ATAATTACTTTATGTTTCTTGCAATCGAATGACTGAATGAGCAGGAGTGGACACAAGCACAGAAGAGGGAACTGGAAAGG TTTAAAGTGAAAATGTTGCTTACTGTTCAGCTCCAAAGTCCAAATCAAATTCAAACAAGTAATGATTTATCCGGCTGTTC TAATCATGGGATTTTTAAAAGCTGCAGGTATGCCTTTTTCTTTTTTATGTGTGGTCCACATGGGAAAGAAAATATTCAGA AGTGACCATGAAATCCAGTCACATTATGATTAATAGACTATGAAAGTGAGTAGCTCAAACAATTAGAAAATGCCAAAGCT TGGCCTCTTGACTTCTTAACAACCACCAGGAAATCAGGCTCTTGTATTAAGGAAGGACTATTCATGACTAGAGAAACAAG GTACGGATAGAGAC
CDS sequence (LotjaGi6g1v0279700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTTTGGAGGGTTATTTAGCCTTAGTTTTAAAGACTCTAGTGATGAAGATGGGTGTCTGTTACCACCATCGCCG CCGCGTGTTTTCGCAATGTCAGCCCATTTTTCGTTTCCTGAGGAATTTCACGGCTTCAATTTCCATTTCACACGATTGGT CACTCCGCAAACGTAACGTCGAGATAACTATTCTGGGTCGCCGCGGAAAGCTCAAAGAAGCAAGGAAGCTGTTCGATGAA ATGCCTCAACGAGATGCTGTTTCCTACAACTCCATGATCGCCGTTTATCTGAAGAACAAGGACGTACACGGGGCTGAAAC GATATTCAAGGCAATGTCCGAGAGAGATGTTGTTGCTCAGTCCGCAATGGTTGATGGGTATGCTAAAGCTGGTCGCTTGG ATAATGCACGCGAGGTGTTTGATAATATGACTGAGAGAAATGCGTTCTCTTGGACCAGTTTGATTTCTGGGTATTTCAGG TGTGGGAGAACTGAGGAGGCTTTGCAGTTATTTGATCAAATGTCTGAGAGAAGTGTGGTGACTTGGACTACCATGGTTTC TGGTTTTGCTCAGAATGGATTGGTCGATCATGCTCGCAGGTTCTTTGATCTCATGCCTGAAAAGAACACCATTGCTTGGA CAGCTATGGTGAAGTCATATCTTGACAATGGTCAATTCAGTGAGGGTTATAAGCTCTTCCTTGAAATGCCTGAAAGAAAT GTTCGTTCGTGGAACGTCATGATCTCAGGTTGTCTGAGTGCCAATAGAGTGGATGAGGCTATACATTTGTTTGAAACAAT GCCGGATAGGAATCATGTTTCATGGACGGCTATGGTTTCGGGTTTGGCTCAGAACAAGATGGTTGAGGTTGCAAGGAAGT ATTTTGATATCATGCCTTTTAAAGACATGGCAGCTTGGTCTGCAATGATCACTGCATATGTTGATGAGAAGCTCCTTGGT GAAGCTCTTGAGCTTTTCAACTTGGTGCCGGAGAAAAATGTTGGGATTTGGAACACAATAATTGATGGTTATGTAAGGAA TGGTGAAGCAGGGGAAGCCTTAAGGCTCTTTATTTTGATGCTGAGATCTTGCTTTAGACCCTGTGTAACCACTATGACTA GCATCATCACCTCCTGTGATGGCATGGTGGAGATCATGCAAGCTCATGCAATGGTCATCCATCTCGGGTTTGAGCAAAAC ACTTGGGTAACAAATGCTCTTATTACTCTGTATTCCAAAAGTGGGGATCTTTGCTCTGCCATGCTTGTTTTTGAGCTTCT AAAATCAAAAGATGTAGTGTCATGGACTGCAATGATTGTAGCCTATGCAAATCATGGACATGGTCACCATGCATTACAGG TATTTGCTCGCATGGTAACATCAGGAACTAAACCAGATGAGATCACCTTTGTGGGACTCTTATCAGCATGTAGTCATGCT AGTCTTGTCAACCAAGGTAGAAGAGTGTTTGACTCAATCAAGGGTGCCTATAATTTAAATCTCAAGGTTGAGCACTATTC CTGCCTTGTAGATATGCTAGGTCGAGCAGGACTTGTGAATGAAGCAATGGATGTAGTATCAACTATCCCTCCTTCTGAGA TCGATGAAGCTGTTCTTGTAGCATTGCTTGGTGCCTGCAAGCTACATGGGAATATTAAAGTAGCAAATTCAATTGGCCAG AAGCTATTAAGTTTAGAGCCGACTAGTTCAGGGGGGTATGTGCTACTATCCAATGCATATGCGGCAGAAGAGCAATGGGA TGAGTTTGCACAAGTAAGGAAAAGAATGAAGGAGAAGAATGTGAAGAAAATTTCAGGATTTAGTCAAATACAAGTAAAAG GAAAAAATCATTTGTTTTTTGTTGGGGAAAGATCTCATCCCCAGGTTGAGGAAATTTACGGATTTTTGCAACAGAGTCTT CAACCTTTGATGAGGGAAACGGGTTATACACCAGAGAACTCATTGTTAATAGATACTTTTCACAATTAA
Protein sequence (LotjaGi6g1v0279700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METLEGYLALVLKTLVMKMGVCYHHRRRVFSQCQPIFRFLRNFTASISISHDWSLRKRNVEITILGRRGKLKEARKLFDE MPQRDAVSYNSMIAVYLKNKDVHGAETIFKAMSERDVVAQSAMVDGYAKAGRLDNAREVFDNMTERNAFSWTSLISGYFR CGRTEEALQLFDQMSERSVVTWTTMVSGFAQNGLVDHARRFFDLMPEKNTIAWTAMVKSYLDNGQFSEGYKLFLEMPERN VRSWNVMISGCLSANRVDEAIHLFETMPDRNHVSWTAMVSGLAQNKMVEVARKYFDIMPFKDMAAWSAMITAYVDEKLLG EALELFNLVPEKNVGIWNTIIDGYVRNGEAGEALRLFILMLRSCFRPCVTTMTSIITSCDGMVEIMQAHAMVIHLGFEQN TWVTNALITLYSKSGDLCSAMLVFELLKSKDVVSWTAMIVAYANHGHGHHALQVFARMVTSGTKPDEITFVGLLSACSHA SLVNQGRRVFDSIKGAYNLNLKVEHYSCLVDMLGRAGLVNEAMDVVSTIPPSEIDEAVLVALLGACKLHGNIKVANSIGQ KLLSLEPTSSGGYVLLSNAYAAEEQWDEFAQVRKRMKEKNVKKISGFSQIQVKGKNHLFFVGERSHPQVEEIYGFLQQSL QPLMRETGYTPENSLLIDTFHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 54 | 84 | 31 | 7.158 | ||
| Gene3D | 56 | 207 | 152 | 5.9E-40 | ||
| Pfam | 62 | 84 | 23 | 0.01 | ||
| SUPERFAMILY | 67 | 265 | 199 | 5.69E-7 | ||
| ProSiteProfiles | 85 | 119 | 35 | 10.413 | ||
| Pfam | 87 | 116 | 30 | 1.1E-5 | ||
| TIGRFAM | 87 | 118 | 32 | 1.1E-6 | ||
| PANTHER | 120 | 232 | 113 | 4.0E-104 | – | |
| ProSiteProfiles | 121 | 146 | 26 | 7.136 | ||
| TIGRFAM | 121 | 146 | 26 | 4.9E-5 | ||
| Pfam | 121 | 147 | 27 | 7.4E-5 | ||
| ProSiteProfiles | 147 | 181 | 35 | 12.671 | ||
| SUPERFAMILY | 148 | 569 | 422 | 4.93E-5 | ||
| TIGRFAM | 149 | 179 | 31 | 6.6E-9 | ||
| Pfam | 149 | 178 | 30 | 6.1E-9 | ||
| TIGRFAM | 180 | 208 | 29 | 1.9E-6 | ||
| Pfam | 180 | 209 | 30 | 3.9E-7 | ||
| ProSiteProfiles | 182 | 208 | 27 | 6.741 | ||
| Gene3D | 208 | 301 | 94 | 1.9E-21 | ||
| ProSiteProfiles | 209 | 239 | 31 | 9.504 | ||
| Pfam | 212 | 241 | 30 | 5.9E-5 | ||
| TIGRFAM | 212 | 241 | 30 | 1.8E-4 | ||
| PANTHER | 214 | 298 | 85 | 4.0E-104 | – | |
| ProSiteProfiles | 240 | 274 | 35 | 11.06 | ||
| TIGRFAM | 243 | 273 | 31 | 2.5E-6 | ||
| Pfam | 243 | 271 | 29 | 5.8E-6 | ||
| TIGRFAM | 273 | 298 | 26 | 5.8E-4 | ||
| Pfam | 273 | 299 | 27 | 4.5E-4 | ||
| ProSiteProfiles | 302 | 332 | 31 | 8.024 | ||
| Gene3D | 302 | 384 | 83 | 5.6E-15 | ||
| PANTHER | 306 | 597 | 292 | 4.0E-104 | – | |
| Pfam | 332 | 379 | 48 | 1.9E-7 | ||
| ProSiteProfiles | 333 | 367 | 35 | 11.378 | ||
| TIGRFAM | 336 | 367 | 32 | 2.8E-6 | ||
| Gene3D | 385 | 484 | 100 | 7.1E-20 | ||
| ProSiteProfiles | 400 | 430 | 31 | 7.059 | ||
| Pfam | 430 | 478 | 49 | 1.4E-10 | ||
| ProSiteProfiles | 431 | 465 | 35 | 11.498 | ||
| TIGRFAM | 433 | 467 | 35 | 1.2E-6 | ||
| ProSiteProfiles | 466 | 496 | 31 | 6.401 | ||
| Gene3D | 495 | 625 | 131 | 3.7E-8 | ||
| ProSiteProfiles | 502 | 536 | 35 | 6.84 | ||
| Pfam | 505 | 525 | 21 | 0.39 | ||
| ProSiteProfiles | 569 | 603 | 35 | 7.388 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0279700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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