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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0280400 |
| Transcript ID | LotjaGi6g1v0280400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein; TAIR: AT4G17170.1 RAB GTPase homolog B1C; Swiss-Prot: sp|P92963|RAB1C_ARATH Ras-related protein RABB1c; TrEMBL-Plants: tr|A0A0B2Q350|A0A0B2Q350_GLYSO Ras-related protein RABB1c; Found in the gene: LotjaGi6g1v0280400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59691131..59695426) extracted from Lotus japonicus Gifu genome v1.2.
AGATAAGAAGAAAAGTGAGAGAAAGAAGGAACCTAGAGAGAGAAAGTAGAGAAAGAAACGTATTTGCCTCGCTGGAACAG AGAGACAGAGAGAAGAAGCAACAGTTTTTGTTTATATTTTGATTTCCTTTTGACTCTCTTCTCTTCTCTTCTCTTCTCTT CATCTTCTTCTTCAACCTTCTTCCTCTGTTCGGAATTCGAACGATCTCAACTTCACAGCATGTCTTACGCTTACCTCTTC AAATACATCATCATCGGCGACACCGGTAATCAAATCGTCTTCTCGCTTTATTGCAATCGTTGTTTCATCATCGTTTTTAG GGTTTTTTTTAGAATGATTTGATAGCTCGTAAGATTTGGTTTGGTTCCGTTTGTTCTGTATCAATTTCTGTATTTCTATC AATTAAACCTAGAAAAATGATAACTAGGTTTTGATTTGGTTCTTTTTGTTATGCGGTGATTGATTGCTGTGGACTCATAT GTTTTTTTTGTTGTTGCTGCAGGAGTTGGAAAATCATGCCTTCTACTTCAATTCACCGACAAGCGCTTTCAACCCGTTCA TGACTTGACAATCGGTGTTGAATTTGGAGCTAGGATGATCACAATTGACAATAAGCCAATCAAGTTGCAAATATGGGATA CGGTTAGTTTCGACCCGTTTCGTAGAGCTTAGCATAAATAGAATTGGTTCAAATTTGGAAATCTGTGAAACTTGCTTGCT GCTGTTTCTTATTTCTAGGAATTTGCAATTGGTTGTGGGGTGATTGTTTATGTTAGGGCATTTGCAATTGGTTGTGGGTT GATCGTTTATGTTAGCGATTTTTATTGGTTGTTTCATCCTCTATTTAGCTTGTATATGCAACCTGAAAAGTTTTATGTGG TTGAAGATGATAGGGTCCTGTTACCAAGTAGGCACTCTGTAAAGAATTGAGGAAATAAAAAGTACTTTTAATGAAAACTG CTATATCTAATCAGCATTATCAAATAGCGGCCGCTGTAGCGTAGCGGATTTTTTGCTAATCACGACGCCGCTATTGCCCA CTATAGCGCACTAGTCGCCGCTAAATAGTGGATTTTTGGCTCACCGCCATGGTCCGCGATCGCGATTTGACAACACTGTT TCTAATTCGTTAGAAACTTAAGAAGCTTTCGTTTTCATTTGATACTTACTCCTTTTGGATCTTTAACGATTTGTGCAGCG CTTGTTAGCATTTATGAAGAAAAGAATACCATGTAATTATTATTCTATGTTGAATTTTTGGCTGATTTTCATACAAAGAT TTGTCCTGATAGAAATCATATGATTAATGGGGCTAGGACGGATGGTGTTTGTCATAAGTGTAGTTTGTTCCTGACTTCCG GTAACTTTCATATCCATACTGCGTTTTTTATTCTTCTTAAGAACATTATGCTGAGCATGGTGTAATCTGTCCCTGTAAGT TTTATCTGTTCTTGCGGGATGATCGATCTCCGTTGTTGAAAACCTAATTAGCTGGGGATGACAGCCTTTATTCATGAATT TATCCAAAATTAAAATTACATTATACATGAGAATAAACTTGAATTTGGAGAGGTTGTATATTTTTCTCAACCCATCTTCT CTAGTGATTATGAGATATGGGTGGAAAGACTTAGCTACTACACGGGTATGGTAGGTAGGAAGTACATGGACAGATGGACT TTGGTGAGCCCTTGAGATACCTTCCATATTTTAAATGGTTAGGGTTTATGAATTCAGTAATTGACAATAATGCGACAATT TTGAACTACCCATCACAATTATAATCATCGAGCTAAGTGTAATTTGGGTTTGATTTATATTTTTTCAGCTTGGATTGATT TTCCAGATTTCAGTGATGAAAAATGTTCTCCATTAGTTGCTTGAGATGTGAAGTTTTAGGTACTGAGTTTTCTTGTAATA TTTCAGGCTGGTCAAGAATCCTTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCACTGCTCGTTTATGA TATAACCAGGTATTCTCAAATTTGAACTTCTAAAATCTTTGTTTGTATCTGATAAGAATTTTTTAGAGAACCGTAGCATA AATCTAGCTGTTGTAGCTGGAGGGCCCAATGCCTTATCACATGGGACTCAACTTGCATACCCCACACCAACATACTTCTG ACGTGGGGCTCAATTTTCATACCCCAAAATTGGACCCTAACAGAATCCTAAAATAAATAATAAAATATCTGTTTTCATAT AGAAAGAAGTTAGTTTTTTAAGAGTCCATCTTATTTACAAATCATATTGCATATCCAATTTTATATTTTATATAATCCAT CACTTCAAATATGATTTGTAAATCATTTTAATCAAAATCATTTCATAAATAAGCTGTTTAAATGCAGTTTAAGTGAAATC ACTGTTGTGAATTTTGAGGGAAGGAAGATATGTGATTTTCTAATAAATATCAATATATTTAAAAGAGCATTGAAAAAACA GCATTTGATTATTTTTATTTACTTAGGAGATACATGCTTTGGAAGAGCATTGAAAGAAAACATGCATTGAATCTTATCCA ATTTGATGGGCTACAGAATGTGCAAAATGCACACATGTTTATGTAATTATGTATGACAGTTATGTGATGATTATTTTATA AATAAAGCAATGAAAATGGTGCTGACCCTTTGTTTACCATAGGAGGGAGACATTTAATCACTTGGCTAGTTGGTTGGAAG ATGCAAGGCAGCACGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGACGGGCTGTA AGCACAGAGGAAGGTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGCTCAGAATGT TGAAGAGGTAAGAAGTCACTCATATAACTTGGGCTTTCTTCGTTTATTATACCACATGCACTCCCGAAACGCAGTTTTCC GACATATCTAGGTACTTAGGCTGAGTATTTTGGAAAGTTATCTATATGGAAGTTTTTATATAACCTACCCTTTTGCAGGC ATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGGTTCGTATCTTTA TTTTTAGCAGAGTCATTCCTTACCTCATCTGTTATATTTCAAATACACTCTGGGTTATTTAATTTCACTCTAACTTATAT TTTTAAATCTGTGGATGCATTATGGGGATAATGATTATAAAGTGGAAAACATACTCCTGATTCAAGGAGCAAGAGTTAAG ACACTGATAAAATTTCTATGTTTGCAGTCTTATGGAATTAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAG GGATGGCCCTTCTGCCTCGGCTGGAGGCTGCTGCAGTTGAAGTGAACATATTGCAACCTATTTGCTTCGATGTAGTTCTA TATGCAGTCTCTTCCTTACTTTTATTCTGGGTTTGGATATCAAGATATATATGCTCAACGTCCACTGATGAAGTCAGATA ATTGTATAATGTTTTCTTTTAAATCTTTACTCTGCTTCTTTGACTTAAACTGATATTTGTCCATATTTGTGTGCAGAATT AATTGATCTCTTGTTTCATATGTGTTAAATAAGACTTGTTCTTTTGTTGAAATATAATGCACAACAAGTGTGATTTTGCT TCCGTGGGGAGAACACCATCGAGGCACTTGGGAGTAAAGTCACATATTATAACACTTTTATTTTTAAAACATGAGCTAAG AGCCTAAGATGAATACGCCAAGTTAATGTAGACAACAATCTATTGTAGTTACTTTCAATAGAGGTAAGGAAGTTGTCACG GATTGACTAATTTACACACAATAACATGGTTGGACTTCCAAGTAATGTAAACTTCTTCAATTCATAAGGTAGATTGGAAA GAATCATTTAATTTTAAATTTTTATATGGATTTTCTTCTTTAATTTGGGATTCCCTGCTGAGTTGTGGGACTAACCCATA GGTTGAGTTTGCATTAAAAAACACTCATAGGTATGAAGCTCTTTCAAGAATTGTGATTCTAGGTTGCTTTCCGAAATCCA TTTCTTTAAGATGGTTCAATTGGTGGAGTTATAAATACACAACAGAAGTTAAGGATTAAAACTACCTATGGAATTCCGTC TCTTTTCCATTCCCTTGCCGATCCCAAAATTCGTGTCAACGACTAATCCAATAAAAGAATATTAGGTTTATTATCTTCTG TTATAGATCTAATAATTGTGAACCAAGTTAGTTGGTTTTGTTGAGAATTGAGTGGT
CDS sequence (LotjaGi6g1v0280400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTACGCTTACCTCTTCAAATACATCATCATCGGCGACACCGGAGTTGGAAAATCATGCCTTCTACTTCAATTCAC CGACAAGCGCTTTCAACCCGTTCATGACTTGACAATCGGTGTTGAATTTGGAGCTAGGATGATCACAATTGACAATAAGC CAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCCTTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCA GGTGCACTGCTCGTTTATGATATAACCAGGAGGGAGACATTTAATCACTTGGCTAGTTGGTTGGAAGATGCAAGGCAGCA CGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGACGGGCTGTAAGCACAGAGGAAG GTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGCTCAGAATGTTGAAGAGGCATTC ATAAAAACAGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATTAAAGT AGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCCTCGGCTGGAGGCTGCTGCAGTTGA
Protein sequence (LotjaGi6g1v0280400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF IKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 183 | 183 | 5.9E-69 | – | |
| SUPERFAMILY | 2 | 179 | 178 | 5.61E-60 | ||
| ProSiteProfiles | 2 | 210 | 209 | 36.23 | – | |
| PANTHER | 3 | 210 | 208 | 2.7E-130 | – | |
| PANTHER | 3 | 210 | 208 | 2.7E-130 | – | |
| CDD | 3 | 170 | 168 | 1.23768E-132 | – | |
| SMART | 4 | 170 | 167 | 7.3E-38 | – | |
| TIGRFAM | 7 | 160 | 154 | 3.9E-33 | ||
| SMART | 7 | 170 | 164 | 4.1E-107 | – | |
| PRINTS | 7 | 28 | 22 | 2.3E-42 | – | |
| Pfam | 8 | 168 | 161 | 8.2E-63 | ||
| SMART | 9 | 170 | 162 | 6.2E-12 | – | |
| SMART | 12 | 211 | 200 | 5.2E-5 | – | |
| PRINTS | 30 | 46 | 17 | 2.3E-42 | – | |
| PRINTS | 48 | 70 | 23 | 2.3E-42 | – | |
| PRINTS | 110 | 123 | 14 | 2.3E-42 | – | |
| PRINTS | 145 | 167 | 23 | 2.3E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0280400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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