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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0280900 |
| Transcript ID | LotjaGi6g1v0280900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit rpb4; TAIR: AT4G15950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|Q6DBA5|NRPD4_ARATH DNA-directed RNA polymerases IV and V subunit 4; TrEMBL-Plants: tr|A0A151T6X0|A0A151T6X0_CAJCA DNA-directed RNA polymerase II subunit rpb4; Found in the gene: LotjaGi6g1v0280900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59734590..59738646) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCCTTTCATTCTTTTTGCATACCAAATAACAAAAAATTATCTTCCTTCCACTCTTTTTCTTTCCTTTCCTACTACT TTTCTCCTACAACCAAACAATGCCTTAGCATTGTTGTCAAATTGCAGTGTTCTTTAGCATTTGCTTCACTCCAATTGGCG TTTTCTTCTTCCCTTTGGTGCTGCAATTTCTCTGTGGGTAAGCAAACCTTAACTCCCCTTTCACCGTGTTTCTGCACTTC ATCAAATTCAACGCATGTTCTGAAAAATCGTTTCTCTGCAAAATCCCAATTCGATAACCTTACATTGACACTGTGAATCG TTCATCAACACTAGTCTTTGAAATCACTGTGTTGTTTGTTTGTTTGCTTTACCTGCATTGCTCTCTACTTGGAATTTTGC AGGTTAGCTATGTCGGACAAAACAGGAAAGGGCTTTACGCCGTTTGGCAAAGCAGGTGAAGTGTTTCACATTCTCTCTTT ATATATACACCTTGCTCTACCAAAAAGTTTCAATTTTTCCTTTTGGGTATTTGATTTTTTTTCCCACTTTTGTTGGGGGT TGGATTTTGTTCTATTGGGTCATCATGCAAAAATATTGGACTGGATTTGACCTATGACATTGCTGCTGTTACTGTCATTC TCTTATGGTGTGTGTTTGTGAGTTGAGTTTTGGAGGTGAGAGAAGGGAAATGAAAGGCTTATGAGAAGTCATCCCCTTGT TTTGAGAGTTTTCTAAGAAGTGGGTAAGCATTTGGGGAATTTTTTAAAACCCTCCAAAACCCTTCCAAGACACTAGTGTA GTTATTTTGTGGAGTTTCCTCAAATTGGGGGTTTGGGTGAAATTTTGAGCTTCTAGACTGTTGGGATGTCAAGTGTGAGG AAAGAAGTCTTACATAGGAAGATTAGGGGAGTATTAATCACTTTATAAGTAAGAGGACCCAGACACCTAATGCCTTAAGG TTTTGGGTGAAAATGTGGTGTCCAATGCACTTGTGGTTTACTCTTGTAAGCCCAATGTGGAGATCCCCCGGAGTTTTATC CTCTTGCGGCCCAACACAGACCAAGGGGGAGCTTACCGTCCCTTCCCCTTTCTTTCCCTTCACTTACTCTCAAAGCCTTG CCCTTCCCTCTCTCAGGAACTCCCAAGCACACCCTTAGGAAATTCTTTCATTTTCCCCCTGTTTTGAGATATGAGATGGT ATATCCATTTTTTTAATGTATTTATTCCCCATTTGATTTGTTGGATATGTCTTTGATATATATCATCCTTTGATTTGCAT ATGTTGCTTGATGCCTATATCTTTGTTTTTCTGTTTGTTTTGACTACTGATATATGGTTCTGTGTTGGACACTTCAGATA ATGTGTTCATCTTGGCTTTATCGATCTATGGCGCATAGTGGGTGTTAATAGTTTTAACCATTTGGTGGTACTGTAAATGT TGATTGTTAATATTTTTTTTCTTGTTAGGATCCCTGAAAGGGAAAGATGACAGTACACCAAAATCAGCACAGGGAAGGAA GGCTCAGTTTTCCAAAGAAGGTTAGCATCATTTATGTGATTGTTGTACTCCTTCTCTGTGGAGTATGCAAGTACTGTGAG GTTCTTTGTAAAGCAGTTGCTTCTATATCTAAAGACTTTGGGATACTGATCATATTTACTACTAGTTGTGCGATCACTTA CTGAAGTCATTGTTTGGTTGTATATTCTAGGTCCATTTCAATCCAGAATGAATGGTTCACCGACACCTGGTGGAAAAGGT ATAATGTGATTACTGATTCCCCAAGTTATTATTGTTTTCGTCATTTCGAGAGTTTGCATTCTGGCACAATCTTCATTCCA ATCATTAAACTGATTGCTTATATTCTTTTCTTGATTTGTTAGTTATGTTTCTTTTTCATGGACCATTTTTCATTTTCAAG GTGAAAAGGAGGACAAGGCTGCAAATGGTGGAAAGACTTCAGGGTCACAAGACCTTAAAATTGATCGAGGTATCAGCCTG CTTTCATCATCTCTCATGTGTTTTCTGTTTCCTGTGATTTTTTGTAAATCATATATTAGTTTATACTTGTATGTTGTCTC ACATTGTGATTTAGCTGTTTAGTTTGCATTAGATGAAACCCCACTTTATCTCTAATTTAGCAATATCAACAACATTAATT CTCTGGGTGACATTGCAGAACTTCCAGCAAATGTCAAATGCTTGATGGATTGTGAGGCTGCAGATATTTTACAGGGAATT CAAGAGCAGATGGTCACGCTATCTAGAGATCCAACTATCAAACTCCCAGGGTGAGAGAGACACTGAGCTTCTTTTTTATT GAAAAGGATGCATGAGCTAATTGAGTTTTATTACTGGAGTAGAAGATCAATTTCACTGATCTGAACTTTGTCTTTATTTT CTGTTTTAGACCATTTGACAAGGGGCTGCAGTATGCCAAAAGCAGTAGCAAGTATACAAATGCCAAGTCCATTAGACGCA TTGTTGAGTATCCTTAAATTTTCACTGTGGACAGTGTTTATACATCTGTGTGCTGTCTGTGTTTGGATTTGTTTGCATGT TAAATGGTATTATTGTTTTACTTTATATCACTCCTATCTCTTGTCTCTATAATGTTCATCTCTTGACTCAAATATTAGGC CTCTTGCAAATAATGGTCTCACTGATTGTGAGGTATTATCAATCTTATTCTAACTTCCTTTGTTCTTATGTATTATGTAG CTCTCTTGACATCATTATCCACTGCAGGTATGTGTGATTGCTAATGTGTGCCCAGAAACTGTTGATGAAATTTATGCTCT CCTCCCATCATTGAAGGTATGGCATGATGCACTTTGAGTTCCTTTTTAACTTAAATCATCAATGGAAGGAGTATGGTCTT TGTTATATAATGATATTATTTCACTATTAATGTTTTGAGTGTTTATTAAGAAAAGGAGGCCTCCCTTGGATAAGTAAGTG CAGTTGCAAAAAACACAACTACTTCATGGTCTCCATTGTTTTCCTTCCCCTTTTTTCTTACTGTAGTGAAACTGAAAACA AAGTCGGGCGACAGTTTATTATATGCCAAATATCTGGGGTGGATAGCTTGACCCTTTTTGAGCCTACACAAGATATTTTA ACTAGTTTTCTGACTATTATGGTCCGTTTGGAAGAGCTTTTGTTATCACATAAGCGCATTTTGGTCCGTATTCAAATGAG CTCTATGACTACCTATAAGTTGTTTTGAACATATTTTCATAAGCTGCTGAGATTAGCGTATGTATAAGCGTTTATACCTA TATATAACCTATTTTGTGCTTACTTCAATAAACTTCTCAAATTAGCTTAGGAATAAAGGCTTATGTGATAAGCGTAATTG CAATAAGTGCTTAATTAAGTTGTTAGCTCAAACACATACTATATCCCTAGTCATGAGACCTATTTAAGTTCTCTGTTTGC CCTTATTTCTTCTGAGGATATGGGATTCTCATTCCCACTTGTAAAGGAAAATTAACAAAAGAGAAAACGACTTGCAAATA GGGTGGTGCCATCTCATAGTATTTATCTCTATTTCAGGGTAAGATAAACCTTAACAGACAACTTCTTGAAGATTCAGTGA GTGAGCTTGCTAAGCTTAGACGACCAGTCTAAAGAAGCCACATAATGGAAAAGGTTCACTGGTGAGTGAGTTTTCTCTTT TTTATGCTTTGTTTCACTCTGCATCCTTCTTTTAGATCTGCTTCTGATTTGGCCTTTTCATTTGTTCTGAGTGCAGGTTT ACCATTTAGATCTGCTTGCTGAAGTAACTGCTCGCCTGGCAAATTTATCTCATGCAAAACAATTCTTGAGCTTACTAACT GAGACAATGTGTTGTAAAAACTCAAGCCATGTTTTATATTCATGTTTTCAATGGCTGTACAAAGATCTAATGTGGATCTC AAGTAGATGAATTTCATATCTACAAGACTATGGATCTTATATCTAAGGGGAGAATGGATTTTCTCATGAGAAATTTTCAC GTAATAGGGTAATATGGTTATTTTTTTGTGGTTATTTACCGATTTTTTAGTTGAGTT
CDS sequence (LotjaGi6g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGACAAAACAGGAAAGGGCTTTACGCCGTTTGGCAAAGCAGGATCCCTGAAAGGGAAAGATGACAGTACACCAAA ATCAGCACAGGGAAGGAAGGCTCAGTTTTCCAAAGAAGGTCCATTTCAATCCAGAATGAATGGTTCACCGACACCTGGTG GAAAAGGTGAAAAGGAGGACAAGGCTGCAAATGGTGGAAAGACTTCAGGGTCACAAGACCTTAAAATTGATCGAGAACTT CCAGCAAATGTCAAATGCTTGATGGATTGTGAGGCTGCAGATATTTTACAGGGAATTCAAGAGCAGATGGTCACGCTATC TAGAGATCCAACTATCAAACTCCCAGGACCATTTGACAAGGGGCTGCAGTATGCCAAAAGCAGTAGCAAGTATACAAATG CCAAGTCCATTAGACGCATTGTTGAGCCTCTTGCAAATAATGGTCTCACTGATTGTGAGGTATGTGTGATTGCTAATGTG TGCCCAGAAACTGTTGATGAAATTTATGCTCTCCTCCCATCATTGAAGGGTAAGATAAACCTTAACAGACAACTTCTTGA AGATTCAGTGAGTGAGCTTGCTAAGCTTAGACGACCAGTCTAA
Protein sequence (LotjaGi6g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDKTGKGFTPFGKAGSLKGKDDSTPKSAQGRKAQFSKEGPFQSRMNGSPTPGGKGEKEDKAANGGKTSGSQDLKIDREL PANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLPGPFDKGLQYAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANV CPETVDEIYALLPSLKGKINLNRQLLEDSVSELAKLRRPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 75 | 75 | - | – | |
| PANTHER | 16 | 198 | 183 | 5.3E-67 | – | |
| PANTHER | 16 | 198 | 183 | 5.3E-67 | – | |
| SUPERFAMILY | 57 | 197 | 141 | 1.44E-25 | ||
| Gene3D | 71 | 199 | 129 | 9.7E-27 | ||
| SMART | 77 | 200 | 124 | 1.5E-10 | ||
| Pfam | 86 | 179 | 94 | 9.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Cellular component | RNA polymerase complex | Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. | ||
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi6g1v0280900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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