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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0290800 |
| Transcript ID | LotjaGi6g1v0290800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G04370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370; TrEMBL-Plants: tr|I1MFJ8|I1MFJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0290800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60794317..60797016) extracted from Lotus japonicus Gifu genome v1.2.
TGCCCTTAGTCATTCATATCAGAGCTGAGCAGCATCAAAAGGAATGGGTCATGTTGACATCCAAGCCAAAGCCAAACCCG CCGTCGCTGCAAACTCTGAGTGGCCTGAAACGGTGGTTGGTGTCACCACCACACCCACACCCTCCTTCATCTTCAGCCAC CACACACTCATTCAATGCCATTATCAACCGCCATTCATCCCAAGGTGCTCACCGTCAAGTTCTTCTCACATACACCTCCA TGCTCAACTCACACGTCCCTTCTGACGCCTACACCTTCCCCAATCTTCTCAAAGCTTGCTCCTCTCTCGACCTCTTATCC CTCGGTCTTTCGCTCCATCAACGCATTGTAGTTAATGGGTTGTCCACTGATGCCTACATTGCTTCTTCTCTGATCAACTT CTACGTTAAATTTGGGTGCGCTGATAATGCTCGCAAAGTGTTTGACATTATGCCTGAGAAGAATGTAGTGCCTTGGACTA CTATCATCGGGTGCTACTCGCGCATGGGTCATGTTCATGAGGCATTTTCTTTGTTCCATGCAATGCGTTGCCAGGGAATT CAACCCAGTAGTGTTACCATGCTGAGTTTGCTGTTTGGAGTTTCAGAGCTTTCTCATGTGCAGTGTTTGCATGGTTGTGC AATTTTGTATGGGTTTATGTCAGATTTAAGGTTGTCGAATTCTATGCTGAATGTGTATGGGAGATGTGGGAACATTGAAG ATTCTAGGAAATTGTTTGATCACATGGATCAAAGGGACCTGGTTTCATGGAATTCCTTGATTGATGCCTATGCCCAGATT GGTGATCTTTGTGAAGTTGTGTTACTTGTCAAGGCAATGATGGTACAAGGTTTGGAGCCTGATGCGAAGACTTTTGGGTC GGTATTGTGTGTGGCTGCGTCAAGAGGTGATGTAAAATTGGGAAGATCAGTGCATGGCCAGATTTTAACAGCTGGTTTTG ACTTGGATGCTCATGTTGAAACATCACTTGTTGTAATGTACTTAAAAGGTGGGAACATTGCCATTGCATTTAGAATGTTT GAAAGGAGTTTAGACAAGGATGTAGTTTTGTGGACAGCAATGATCTCAGGCCTTGTGCAGAATTGTAATGCAGACAAGGC ACTGGATGTTTTCCGTCAGATGTTAAAATCTGGAGTGAAGCCATCTACTTCTACTATGGGCATTGTGATTACAGCTTGTG CACAACTTGGATCTTTTAATTTGGGGGCATCAGTTCATGGCTATATATTAAGGCAAGAATTGTCATTGGATATCGCTGCT CAAAACTCTCTTGTTACAATGTATGCAAAGTGTGGCCACTTGAATCAGAGTTCCATTGTATTTGAGAAGATGAACAAAAG GGACTTAGTCTCCTGGAATGCCATACTTTCTGGATATGCTCAAAATGGCTTCTTAAATGAGGCCCTTTTGCTTTTTACTG AAATGAGGACTGATCATCAAACACCTGATTCAGTAACCATTGTCTCCCTCCTCCGAGGGTGTGCATCTACTGGGCAACTC CACATGGGAAAATGGATCCATGGTTTCGTAATAAGAAATGGCCTTAGGCCGTGCATCTTGGTCGACACTTCTTTGGTAGA CATGTACTGCAAATGTGGTGATTTGGAGACTGCCCAAAGATGTTTCAACCAGATGAAAATTCAGGATTTGGTATCATGGA GTGCCATAATTGCTGGATATGGCTATCATGGCAAAGGGGAATCTGCATTGAGGTTGTTCTCAAAGTTTCTGGAAAGTGGG ATTAAACCCAACCATGTGATTTTCCTCTCAGTTCTGTCCTCTTGTAGTCACAATGGACTTATTGAGCAGGGCTTGAGCAT ATACGAATCAATGGCTAGAGATTTTGGGATTGCACCAAATCTCGAACACCATGCTTGTGTGGTGGATCTCCTCTGTCGTG CAGGGAGGGTAGAGGAGGCATATAACTTGTACAAAAAAGTGTTCTCAGATCCTGCACTTGATGTTTTAGGCATACTCCTT GATGCTTGTCGAGCAAATGGTATTAATGAACTTGGTGAGACAATTGCCAATGATGTTCTTAAGCTGAGGCCTACCAATGC TGGAAATTGCGTACAATTAGCACACTGCTATGCTTCAATAAACAAGTGGGAAGGAGTGGGTGAGGCATTGACCCATATGA GATCTCTTGGCTTGAGAAAAATTCCTGGCTGGAGTTTTATTGACTTACATGGGATCATTACTACATTTTTCACAGATCAC AACTCACACTCTCAGTTGGAAGAAATAGTGTATACACTAAAGTTTTTGAGAAAGGAAATGGTCAAAATGGAGGGACCACA CATTAACCTTGAAAGCATCACAAAATGTGCTGAGGATTTATCTAACCAGGAGTAATTCAAAGATTGAGTGGCACTATTGG AGTATCCTGTGATGCTGCCGCTGCAAAGTATTTGGATATCCATCGAAGATATTTCCATAGCAGATTGACTGGCACATTTG AAGTTTCCTGTGAATGCCACTGGATTGTTTTTTTGGGTTGATATGACATCATAGTGCTATGAACACTTCGTAACCTACGA GATCTGTCTCAACCAAAATGTATACATCATATGTACAACAAAATATAAAGTTATCAATCATTGATTTTTTTTATCTATTG TCACAACTTCACAATTTTTCTTTTAAAGTGCTCTTTTCATTTAAAAATACTTTAATCTCA
CDS sequence (LotjaGi6g1v0290800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACATCCAAGCCAAAGCCAAACCCGCCGTCGCTGCAAACTCTGAGTGGCCTGAAACGGTGGTTGGTGTCACCACC ACACCCACACCCTCCTTCATCTTCAGCCACCACACACTCATTCAATGCCATTATCAACCGCCATTCATCCCAAGGTGCTC ACCGTCAAGTTCTTCTCACATACACCTCCATGCTCAACTCACACGTCCCTTCTGACGCCTACACCTTCCCCAATCTTCTC AAAGCTTGCTCCTCTCTCGACCTCTTATCCCTCGGTCTTTCGCTCCATCAACGCATTGTAGTTAATGGGTTGTCCACTGA TGCCTACATTGCTTCTTCTCTGATCAACTTCTACGTTAAATTTGGGTGCGCTGATAATGCTCGCAAAGTGTTTGACATTA TGCCTGAGAAGAATGTAGTGCCTTGGACTACTATCATCGGGTGCTACTCGCGCATGGGTCATGTTCATGAGGCATTTTCT TTGTTCCATGCAATGCGTTGCCAGGGAATTCAACCCAGTAGTGTTACCATGCTGAGTTTGCTGTTTGGAGTTTCAGAGCT TTCTCATGTGCAGTGTTTGCATGGTTGTGCAATTTTGTATGGGTTTATGTCAGATTTAAGGTTGTCGAATTCTATGCTGA ATGTGTATGGGAGATGTGGGAACATTGAAGATTCTAGGAAATTGTTTGATCACATGGATCAAAGGGACCTGGTTTCATGG AATTCCTTGATTGATGCCTATGCCCAGATTGGTGATCTTTGTGAAGTTGTGTTACTTGTCAAGGCAATGATGGTACAAGG TTTGGAGCCTGATGCGAAGACTTTTGGGTCGGTATTGTGTGTGGCTGCGTCAAGAGGTGATGTAAAATTGGGAAGATCAG TGCATGGCCAGATTTTAACAGCTGGTTTTGACTTGGATGCTCATGTTGAAACATCACTTGTTGTAATGTACTTAAAAGGT GGGAACATTGCCATTGCATTTAGAATGTTTGAAAGGAGTTTAGACAAGGATGTAGTTTTGTGGACAGCAATGATCTCAGG CCTTGTGCAGAATTGTAATGCAGACAAGGCACTGGATGTTTTCCGTCAGATGTTAAAATCTGGAGTGAAGCCATCTACTT CTACTATGGGCATTGTGATTACAGCTTGTGCACAACTTGGATCTTTTAATTTGGGGGCATCAGTTCATGGCTATATATTA AGGCAAGAATTGTCATTGGATATCGCTGCTCAAAACTCTCTTGTTACAATGTATGCAAAGTGTGGCCACTTGAATCAGAG TTCCATTGTATTTGAGAAGATGAACAAAAGGGACTTAGTCTCCTGGAATGCCATACTTTCTGGATATGCTCAAAATGGCT TCTTAAATGAGGCCCTTTTGCTTTTTACTGAAATGAGGACTGATCATCAAACACCTGATTCAGTAACCATTGTCTCCCTC CTCCGAGGGTGTGCATCTACTGGGCAACTCCACATGGGAAAATGGATCCATGGTTTCGTAATAAGAAATGGCCTTAGGCC GTGCATCTTGGTCGACACTTCTTTGGTAGACATGTACTGCAAATGTGGTGATTTGGAGACTGCCCAAAGATGTTTCAACC AGATGAAAATTCAGGATTTGGTATCATGGAGTGCCATAATTGCTGGATATGGCTATCATGGCAAAGGGGAATCTGCATTG AGGTTGTTCTCAAAGTTTCTGGAAAGTGGGATTAAACCCAACCATGTGATTTTCCTCTCAGTTCTGTCCTCTTGTAGTCA CAATGGACTTATTGAGCAGGGCTTGAGCATATACGAATCAATGGCTAGAGATTTTGGGATTGCACCAAATCTCGAACACC ATGCTTGTGTGGTGGATCTCCTCTGTCGTGCAGGGAGGGTAGAGGAGGCATATAACTTGTACAAAAAAGTGTTCTCAGAT CCTGCACTTGATGTTTTAGGCATACTCCTTGATGCTTGTCGAGCAAATGGTATTAATGAACTTGGTGAGACAATTGCCAA TGATGTTCTTAAGCTGAGGCCTACCAATGCTGGAAATTGCGTACAATTAGCACACTGCTATGCTTCAATAAACAAGTGGG AAGGAGTGGGTGAGGCATTGACCCATATGAGATCTCTTGGCTTGAGAAAAATTCCTGGCTGGAGTTTTATTGACTTACAT GGGATCATTACTACATTTTTCACAGATCACAACTCACACTCTCAGTTGGAAGAAATAGTGTATACACTAAAGTTTTTGAG AAAGGAAATGGTCAAAATGGAGGGACCACACATTAACCTTGAAAGCATCACAAAATGTGCTGAGGATTTATCTAACCAGG AGTAA
Protein sequence (LotjaGi6g1v0290800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTSKPKPNPPSLQTLSGLKRWLVSPPHPHPPSSSATTHSFNAIINRHSSQGAHRQVLLTYTSMLNSHVPSDAYTFPNLL KACSSLDLLSLGLSLHQRIVVNGLSTDAYIASSLINFYVKFGCADNARKVFDIMPEKNVVPWTTIIGCYSRMGHVHEAFS LFHAMRCQGIQPSSVTMLSLLFGVSELSHVQCLHGCAILYGFMSDLRLSNSMLNVYGRCGNIEDSRKLFDHMDQRDLVSW NSLIDAYAQIGDLCEVVLLVKAMMVQGLEPDAKTFGSVLCVAASRGDVKLGRSVHGQILTAGFDLDAHVETSLVVMYLKG GNIAIAFRMFERSLDKDVVLWTAMISGLVQNCNADKALDVFRQMLKSGVKPSTSTMGIVITACAQLGSFNLGASVHGYIL RQELSLDIAAQNSLVTMYAKCGHLNQSSIVFEKMNKRDLVSWNAILSGYAQNGFLNEALLLFTEMRTDHQTPDSVTIVSL LRGCASTGQLHMGKWIHGFVIRNGLRPCILVDTSLVDMYCKCGDLETAQRCFNQMKIQDLVSWSAIIAGYGYHGKGESAL RLFSKFLESGIKPNHVIFLSVLSSCSHNGLIEQGLSIYESMARDFGIAPNLEHHACVVDLLCRAGRVEEAYNLYKKVFSD PALDVLGILLDACRANGINELGETIANDVLKLRPTNAGNCVQLAHCYASINKWEGVGEALTHMRSLGLRKIPGWSFIDLH GIITTFFTDHNSHSQLEEIVYTLKFLRKEMVKMEGPHINLESITKCAEDLSNQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 37 | 71 | 35 | 6.61 | ||
| Gene3D | 38 | 198 | 161 | 6.4E-28 | ||
| ProSiteProfiles | 72 | 106 | 35 | 6.928 | ||
| PANTHER | 107 | 186 | 80 | 1.7E-136 | – | |
| ProSiteProfiles | 107 | 137 | 31 | 7.618 | ||
| SUPERFAMILY | 119 | 700 | 582 | 5.81E-6 | ||
| Pfam | 137 | 183 | 47 | 1.5E-10 | ||
| ProSiteProfiles | 138 | 172 | 35 | 11.849 | ||
| TIGRFAM | 142 | 173 | 32 | 5.6E-8 | ||
| PANTHER | 190 | 295 | 106 | 1.7E-136 | – | |
| Gene3D | 199 | 285 | 87 | 9.6E-19 | ||
| ProSiteProfiles | 205 | 235 | 31 | 8.944 | ||
| Pfam | 210 | 236 | 27 | 4.1E-4 | ||
| TIGRFAM | 210 | 237 | 28 | 2.7E-4 | ||
| ProSiteProfiles | 236 | 270 | 35 | 11.06 | ||
| Pfam | 238 | 267 | 30 | 0.0086 | ||
| TIGRFAM | 238 | 272 | 35 | 1.0E-4 | ||
| ProSiteProfiles | 271 | 305 | 35 | 6.588 | ||
| Gene3D | 286 | 399 | 114 | 7.8E-21 | ||
| PANTHER | 290 | 392 | 103 | 1.7E-136 | – | |
| ProSiteProfiles | 306 | 336 | 31 | 5.952 | ||
| Pfam | 336 | 384 | 49 | 9.7E-13 | ||
| ProSiteProfiles | 337 | 371 | 35 | 12.638 | ||
| TIGRFAM | 339 | 372 | 34 | 1.5E-9 | ||
| ProSiteProfiles | 372 | 406 | 35 | 6.106 | ||
| PANTHER | 391 | 494 | 104 | 1.7E-136 | – | |
| Gene3D | 400 | 497 | 98 | 1.3E-19 | ||
| ProSiteProfiles | 407 | 437 | 31 | 7.75 | ||
| Pfam | 438 | 485 | 48 | 2.7E-10 | ||
| ProSiteProfiles | 438 | 472 | 35 | 11.498 | ||
| TIGRFAM | 440 | 473 | 34 | 7.5E-6 | ||
| ProSiteProfiles | 473 | 507 | 35 | 8.627 | ||
| PANTHER | 485 | 698 | 214 | 1.7E-136 | – | |
| ProSiteProfiles | 508 | 538 | 31 | 7.267 | ||
| Pfam | 513 | 536 | 24 | 5.2E-4 | ||
| Gene3D | 513 | 710 | 198 | 8.9E-33 | ||
| ProSiteProfiles | 539 | 573 | 35 | 11.378 | ||
| Pfam | 541 | 571 | 31 | 1.2E-4 | ||
| TIGRFAM | 541 | 574 | 34 | 1.7E-5 | ||
| ProSiteProfiles | 574 | 609 | 36 | 7.958 | ||
| Pfam | 576 | 603 | 28 | 0.12 | ||
| TIGRFAM | 577 | 610 | 34 | 0.001 | ||
| ProSiteProfiles | 610 | 640 | 31 | 7.629 | ||
| Pfam | 617 | 636 | 20 | 0.12 | ||
| ProSiteProfiles | 676 | 710 | 35 | 5.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0290800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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