Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0292100 |
| Transcript ID | LotjaGi6g1v0292100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G22080.1 root hair specific 14; Swiss-Prot: sp|O65456|PLY16_ARATH Probable pectate lyase 16; TrEMBL-Plants: tr|A0A0B2S814|A0A0B2S814_GLYSO Pectate lyase; Found in the gene: LotjaGi6g1v0292100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61020185..61023637) extracted from Lotus japonicus Gifu genome v1.2.
CAATAATCTCAACCGTGCAACCACGTCTTAATTTGTACACAAAGTTCTTGACGATTCATCGTGTGCACCACCTTCTTAAT TCTCTCCTATATTTTCCCTTCACCGGTTTGCTAGCTTTCTCAAACTCACTACCAATGGCCACTTCAACCACTCTCCTAGT ACTACTCCTCTCATGGTTTCTACCAACACTGAATGCACATTCAGAAAAGGTACATGACCCTCTATCTGATAATTATATTC CAAGCTACATCCCCAAGAGTCAAGAAAATCAAAATGTGGTCATGAACACAATAGACTCTTGTTGGCGAGCCAAATCAAAT TGGGCTTCAAACCGAAAATCATTAGCAGATTGTGCAATTGGTTTTGGCAAAGATGCTATTGGAGGCAAATTTGGAGAAAT ATATGAAGTAACTGACCCCTCTGATGACCCTGTGAGCCCAAAACCAGGCACACTTCGTTATGGTGTGGTCCAAACAGAGC CTCTCTGGATAATTTTTTCCAAGGACATGGTTATCAAGCTCAAGAATGAGCTCATTGTGAATAGCTACAAGACCATTGAT GGGAGAGGTGCCAAGGTGGAGATTGCAAATGGCCCTTGCATTACAATACAAGGTGTGAGCCATGTCATTGTTCATGGAAT TAGCATTCATGATTGTAAACCTGGTGAGGCAGCCATGGTTATGAGCAATGTTGACCATGTTGGGCACCGTGAAGGCTCTG ATGGAGATGCCATTACTATATTTGCTTCCTCTAATGTCTGGATTGATCATTGCTTCTTTGCTCGTTGCGCTGATGGTCTC ACCGATGTTACTCATGCCTCAACTGCTGTCACGATCTCAAACAATTACTTCACCCAGCACGACAAAGTAAGAAAAATTAG TTTTTCACGAATCAAAGCAACAATGACTGAATTTTTTAGGATAATTTTCTCATTAAGCTAAATGTTATGCTTGCAGGTGA TGCTGCTGGGACATAATGATGAATACAGTGCAGATAGAATAATGAGGGTAACGGTAGCTTTCAACCGTTTTGGCAGTGGC CTAATTGAAAGAATGCCACGGTGAGAGTGAGTGGCTACTAAATTTGAAGATTCATTAATAAATTCTGCATTTACTCATTT GTTTGATGGCATAATGTACAGGGTAAGATTTGGTTATGCTCATGTAGTCAACAACCGGTATGATGAGTGGCTTATGTATG CTATTGGTGGCAGTGCTGACCCTACCATTTTCAGTGAAGGGAACTACTTTATAGCTTCAAATGATTCTGCTGCAAAACAG GTTAGAAAAGAATAATATTAAGTAAAGGGCACAATGGCTTCTCATAGATTGTAATAACAAGTTAATAACAGATCAAAGAT TTCAGTCATATATATACTGAGTGAGGTGTTACTCATTGATGACAGGTTACCAAGAGGGAAACTAGTGGAAAATGGAATAA TTGGAAATGGAGGAGTTCCAAGGATGAATTCATAAATGGAGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTACCCCAA TGTATTCATCTGCTCAAAAATTTAATGCGGCCCAGCCATCCATGGTGCCTCTATTAACTCTCAATGCAGGACCACTGGAT TGTAATGTTAACAAAGCATGCTAATTTCTACCTGTTTTCTTAACTTTTTTTCCTTTTTTTTTTTTGTGATTTTGTATTCT GAGAGCCCCCAATTTGGCATTTTTATCTGAAGACATGGATGTATACAGTATACTCTACCCATTTTCACAGTCATTTTTAT ATCAATTGGAAGAAAGCTAGAATATGTTTTCATTAGTTATATATCTCAGCTCACCATTGGAATTTCACATCAGAGTGTTT TTTTTTTCTAATAAACTTTACAAAGATTTCAAGCCAACAATAATAAAGAGGACAGTAGGAAACTGGGAAAAATTGGGAAG TAACTTGACTATGAAGCAACATCAAGCCCTGTATAATTGTATAAATAAACAAAAGTACAAAACTAATAGCTAAGGGCAAA AAGAGTAGCTAAAGCAAGATGTGTTTGTATGGTTCTGTCTTCATACTATGTGATCTGTTTTCAGAATAGCCTATTTTCAT TGCTCTGAACTCCACATGTGATTGGTGCTTTAGCTCTCACTCTCTTCAAGTACCAAATACCAGCTCCAATTCCAAACGCG CTTGCAGCGGAAACTCCAGTAACAGTCCCTAAAGCCATAATTTCAACACACAACCACAAATATAAGCTTAGATTTTCACT CAAAACACATATCTCATGGCAAATCTTCGTCTATTTCACTCACCTGCGATAACTTGGACCCTCCTTTGGTGCTGTGCAGT GTCATAATCTGCCAAATAAACAATTAAATTTACTCTGTCAATCCATTTAAGAAAACTCTAAAATATAAAGTTACACACAA ACATTCCCAATTGCAATTATGTAGTTGAATTTGAACTACATAACAATAGCATACCTTTACAATGGGTAGTGGAATTTCCA TCCTTACAAAGGCACATGAAACTCTGAGCCACAGTATCAAATCCACAAGTACCACCTCCTTTCACTGGATCCTGGCACTG CAAGCATCTTGTAGTTACAGGAATATCAAAATCAACCCTGATCCCATACTCAGGCACTTGATCATATGGTTGAGGTGCCC CAACATTCCTCCAATAAACGCTAGCATAACTAGTACAATACTTAAGCATCAACCTCAAAGACTCAGTAGCTTTAGGATAG TAAGAGCAGCAAGAGCTTCCAGTGAGAGCAAAAGAGCACCGTGGCAAATGCCTGCAGAGATAGCTAGCACTGTCACAAGA CGAATCACAGTGCTCAGGAAAACGCTCACAGAACATGGGCTTAGGCTGAATGATCACGTGATCCTCACTGCAGTTGAAGA ACATGTACTCATTCTGAGGAGAAAGCTTGAAACGTGTGCTGGTGTCCAAGCTGAACGGCCTAGTGGGGCGAAAACTCTCG CCGTCGTCGCAGTTCCACATGAAGGGGTCAGTGACCACAACGTGTGGATCAGAGTAGCTCAGGTTGCGAACTTGGTATTT TCCTGAAGGTGTTCTGAGCTCGAGCTTTTCTGCGTCGGAACAGACGAGGATGTGGCGGTAGTAGGGGCTGCCGCAGCCAT CGTCGATGCCGAAAGGGTAGTTGATGGGGATGTCACCGCAGGAGGTTCTGCAGATGGTGGATTGAGAATGTACTGTGAGT GTGAGAAATGAGAGAATTAGTTGAGTGACTGGTAATAACATTGTAATATGAAGCAAACTACTCATCACTGAAGATAGCAT AGAAAATGAACTAGATGGTTTCTGAATGAGAGGTTGTGATGTGAAGTAACTTAACTACAGCAGATTGTTGAAGAAATTAA GAAGGAATATAGCAGATTATAGTCTGCTTTTGCTTTTGTTAACTTTTGGTTTCTTTAATCTTTGCATGTGTCCACTTTGC TTGTTGCTTTTGC
CDS sequence (LotjaGi6g1v0292100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTTCAACCACTCTCCTAGTACTACTCCTCTCATGGTTTCTACCAACACTGAATGCACATTCAGAAAAGGTACA TGACCCTCTATCTGATAATTATATTCCAAGCTACATCCCCAAGAGTCAAGAAAATCAAAATGTGGTCATGAACACAATAG ACTCTTGTTGGCGAGCCAAATCAAATTGGGCTTCAAACCGAAAATCATTAGCAGATTGTGCAATTGGTTTTGGCAAAGAT GCTATTGGAGGCAAATTTGGAGAAATATATGAAGTAACTGACCCCTCTGATGACCCTGTGAGCCCAAAACCAGGCACACT TCGTTATGGTGTGGTCCAAACAGAGCCTCTCTGGATAATTTTTTCCAAGGACATGGTTATCAAGCTCAAGAATGAGCTCA TTGTGAATAGCTACAAGACCATTGATGGGAGAGGTGCCAAGGTGGAGATTGCAAATGGCCCTTGCATTACAATACAAGGT GTGAGCCATGTCATTGTTCATGGAATTAGCATTCATGATTGTAAACCTGGTGAGGCAGCCATGGTTATGAGCAATGTTGA CCATGTTGGGCACCGTGAAGGCTCTGATGGAGATGCCATTACTATATTTGCTTCCTCTAATGTCTGGATTGATCATTGCT TCTTTGCTCGTTGCGCTGATGGTCTCACCGATGTTACTCATGCCTCAACTGCTGTCACGATCTCAAACAATTACTTCACC CAGCACGACAAAGTGATGCTGCTGGGACATAATGATGAATACAGTGCAGATAGAATAATGAGGGTAACGGTAGCTTTCAA CCGTTTTGGCAGTGGCCTAATTGAAAGAATGCCACGGGTAAGATTTGGTTATGCTCATGTAGTCAACAACCGGTATGATG AGTGGCTTATGTATGCTATTGGTGGCAGTGCTGACCCTACCATTTTCAGTGAAGGGAACTACTTTATAGCTTCAAATGAT TCTGCTGCAAAACAGGTTACCAAGAGGGAAACTAGTGGAAAATGGAATAATTGGAAATGGAGGAGTTCCAAGGATGAATT CATAAATGGAGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTACCCCAATGTATTCATCTGCTCAAAAATTTAATGCGG CCCAGCCATCCATGGTGCCTCTATTAACTCTCAATGCAGGACCACTGGATTGTAATGTTAACAAAGCATGCTAA
Protein sequence (LotjaGi6g1v0292100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSTTLLVLLLSWFLPTLNAHSEKVHDPLSDNYIPSYIPKSQENQNVVMNTIDSCWRAKSNWASNRKSLADCAIGFGKD AIGGKFGEIYEVTDPSDDPVSPKPGTLRYGVVQTEPLWIIFSKDMVIKLKNELIVNSYKTIDGRGAKVEIANGPCITIQG VSHVIVHGISIHDCKPGEAAMVMSNVDHVGHREGSDGDAITIFASSNVWIDHCFFARCADGLTDVTHASTAVTISNNYFT QHDKVMLLGHNDEYSADRIMRVTVAFNRFGSGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFIASND SAAKQVTKRETSGKWNNWKWRSSKDEFINGAYFVPSGYGSCTPMYSSAQKFNAAQPSMVPLLTLNAGPLDCNVNKAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 11 | 397 | 387 | 9.0E-228 | – | |
| PANTHER | 11 | 397 | 387 | 9.0E-228 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 397 | 376 | - | – | |
| SUPERFAMILY | 50 | 391 | 342 | 2.51E-95 | ||
| Gene3D | 50 | 390 | 341 | 8.9E-121 | ||
| PRINTS | 73 | 90 | 18 | 1.1E-78 | ||
| PRINTS | 96 | 121 | 26 | 1.1E-78 | ||
| SMART | 124 | 321 | 198 | 3.5E-94 | ||
| Pfam | 130 | 315 | 186 | 9.0E-26 | ||
| PRINTS | 132 | 148 | 17 | 1.1E-78 | ||
| PRINTS | 196 | 217 | 22 | 1.1E-78 | ||
| PRINTS | 276 | 295 | 20 | 1.1E-78 | ||
| PRINTS | 298 | 317 | 20 | 1.1E-78 | ||
| PRINTS | 338 | 362 | 25 | 1.1E-78 | ||
| PRINTS | 368 | 391 | 24 | 1.1E-78 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0292100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…