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LotjaGi6g1v0298900.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0298900
Transcript ID	LotjaGi6g1v0298900.1
Lotus japonicus genome version	Gifu v1.2
Description	tRNA dimethylallyltransferase; TAIR: AT5G19040.1 isopentenyltransferase 5; Swiss-Prot: sp\|Q94ID2\|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic; TrEMBL-Plants: tr\|Q1W5W2\|Q1W5W2_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi6g1v0298900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:61677585..61679953) extracted from Lotus japonicus Gifu genome v1.2.

AACAGCTCCAAGCTGCTATATATAAACAGTGCCTCTTATGTGTTAGACGCCCATTCATGATTCATCTTATCCCTATTTTC TATTTCTACTTTAATTCGTTGAATTTCTGAGGCCAGCAACGGAAAAGCATTCAACTTTTAATGTCATGCTTGGAGTCGCC AAAAACAGTCTCTATTTCGCATATAAATACCAGTGTGTGTGAGCTTCCTTTGCTCCACAACAAAATCCACTCACAATAAC CATCCATCTCCAACACTTTACCTAACCATAAAAATTTCCCAATAACTTCTTTTTAAGCCAAGCACCTTCACACCACTTTA TATTCAACACAAGATCATAAATTATCACCCTCTTTCTTCTTCTGCTCGCCGCGTTTTGGAAACTGACGGTATGTACATAA ATACGCATAAGCATGGTGGTCCATGTAAATGCTCTGTTTTCCCCTGTTTTTATTGCTCTGTTTTATCCCCTGTTTTAAAT GCTCTGTTTTGGTACATAAATATTTCCCATTCACATCCTCAAATGTTCATACATGTCTGACATATGGTGTTGTTTACAGA CTAAGCTCCTCTGTTCTTTTCTTTTCCAACTTTTCTCCCTGTCATTGGGTGTAATAAATTAAGAAAAATACCAAACACTA AGAAACAGTTTTCATGGATAGACACAAAGTCACAAACACAAAAATATTTAACTTTATCTTTTCTTTCAACTAACTGAGTT ATTACAGCTAGAAAACAAAACTATCTCCCATCACTTGTGTGCCCATCTCTTTCATGATTGATAAAAACTGATTTGTATAA TAGCTTCCACAAAATATCAATTCCCAACAAACAGTTTGTAAATCAGTGCCCCTATGAGCTTGTTTGGTTGTAAAGTTGAT TACATGACTGAATCATAAAAAATGTTTCGTCAACTATGCAGGTATAATTTTTAAAAGAAGATGATTATCCCAGTGCCTCC ATCTCCTTGCAAGCAAGAACTGCCACTAGTAAACTTCCAAAATGGGCTAATCATGGAGTCTCTGTTTCGCCACCACCGGA ACAAGGACAAAGTGGTGGTGATAATGGGGGCCACTGGCACTGGCAAGACGAAGCTGGCAATAGATTTAGCCAAACACTTC CAACCAGCAGAGATAGTGAACTCAGACAAAATACAAGTTTACAAAGGCCTTGACATCACAACAAACAAAGTAACAGAGGA AGAGTGTGGTGGAATCCCACACCATCTTCTCGGTGCTGTGGATGATCCTAACTATAATTTCACTGCTAATGATTTCTGCC ACCATGCGTGTTCCGCCATCGATTCCATCGTGAAGAAAGATGGATTACCCATCATTGCTGGCGGTTCAAATTCCTACCTT GATGCTCTGGTGAACCATCATGCAGAGTTCAGGTTGAGATACGAGTGTTGCTTCCTCTGGGTTGATGTTTCACTCCCTGT TCTCCATTCCTCGCTTCAGGCCCGTGCGGATCGCATGATTGAGGCGGGGCAAGTGGATGAGGTTCGTGAATTCTTCGATC CTTCTGCGGATTACACTAGAGGGATCAAAAGGGCGATTGGTGTGCCGGAGTTTGACGATTTCTTGAGAGCAGAGGCGAAT GGGGAAGATGACATGACGATACTGCGGCTTCTGGAGGGTGCCATTGCGAGGACCAAGATTAACAACTGCACCCTCGCCAA TCGCCAGGTTCAGAAGATTCATCGCCTCCACAGGGTGTGGAGGAGGAGCATGCATCGGTTAGATGCCAATGACGTCTTCC TCCGAAGAAGCAGCGGTGACTCTGCTGATTCGGAGGAAGCGTGGCAGGATCACGTGCTCGCCAAGAGTCTCATGATCCTG CATAACTTTCTCTACAAGGAAATTTCTTGTGTTCCGACTAGGTCACCGCAGGTGGCCCTCCCGGCCTTTGCGGCGGTGGC GGTGACACACTAGAGGGGCAGAGAATCTGCATATAGAGGCACTTCACACTTTTTTTTTAAGATACTCTCTTTTTGGGGTT TTTTAGGTCATGTCATTGAGTAAAAGTCTTACATTTTGGGTTTTTGAATTTTTTCTCTGGGTCATCATTGGGCCAGTTAA GGTTTTACATGCAGAGAATGTGAACTATGTAATTTTTTTGGGTTCTCTTGGGTTACATCAGGAATACTTGAGTGTATTCC ATATAAATTAATTAAATATGTTAATGGAGCATAGCATATATGATCCTGCACTGAGGGCTGATGTGGGGGGCATAGAATGT AACAGTTGAACTTTGGAAATACTAGTTTAATTTGATACTTGTGTGACATATTTTCTTATAAATCTTATAGCTACACATTG ATTATCCCAGTGTGATTACTGATAATATTAAGGAAAAGTGCTTTAAAAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0298900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTATCCCAGTGCCTCCATCTCCTTGCAAGCAAGAACTGCCACTAGTAAACTTCCAAAATGGGCTAATCATGGAGTC TCTGTTTCGCCACCACCGGAACAAGGACAAAGTGGTGGTGATAATGGGGGCCACTGGCACTGGCAAGACGAAGCTGGCAA TAGATTTAGCCAAACACTTCCAACCAGCAGAGATAGTGAACTCAGACAAAATACAAGTTTACAAAGGCCTTGACATCACA ACAAACAAAGTAACAGAGGAAGAGTGTGGTGGAATCCCACACCATCTTCTCGGTGCTGTGGATGATCCTAACTATAATTT CACTGCTAATGATTTCTGCCACCATGCGTGTTCCGCCATCGATTCCATCGTGAAGAAAGATGGATTACCCATCATTGCTG GCGGTTCAAATTCCTACCTTGATGCTCTGGTGAACCATCATGCAGAGTTCAGGTTGAGATACGAGTGTTGCTTCCTCTGG GTTGATGTTTCACTCCCTGTTCTCCATTCCTCGCTTCAGGCCCGTGCGGATCGCATGATTGAGGCGGGGCAAGTGGATGA GGTTCGTGAATTCTTCGATCCTTCTGCGGATTACACTAGAGGGATCAAAAGGGCGATTGGTGTGCCGGAGTTTGACGATT TCTTGAGAGCAGAGGCGAATGGGGAAGATGACATGACGATACTGCGGCTTCTGGAGGGTGCCATTGCGAGGACCAAGATT AACAACTGCACCCTCGCCAATCGCCAGGTTCAGAAGATTCATCGCCTCCACAGGGTGTGGAGGAGGAGCATGCATCGGTT AGATGCCAATGACGTCTTCCTCCGAAGAAGCAGCGGTGACTCTGCTGATTCGGAGGAAGCGTGGCAGGATCACGTGCTCG CCAAGAGTCTCATGATCCTGCATAACTTTCTCTACAAGGAAATTTCTTGTGTTCCGACTAGGTCACCGCAGGTGGCCCTC CCGGCCTTTGCGGCGGTGGCGGTGACACACTAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0298900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIIPVPPSPCKQELPLVNFQNGLIMESLFRHHRNKDKVVVIMGATGTGKTKLAIDLAKHFQPAEIVNSDKIQVYKGLDIT TNKVTEEECGGIPHHLLGAVDDPNYNFTANDFCHHACSAIDSIVKKDGLPIIAGGSNSYLDALVNHHAEFRLRYECCFLW VDVSLPVLHSSLQARADRMIEAGQVDEVREFFDPSADYTRGIKRAIGVPEFDDFLRAEANGEDDMTILRLLEGAIARTKI NNCTLANRQVQKIHRLHRVWRRSMHRLDANDVFLRRSSGDSADSEEAWQDHVLAKSLMILHNFLYKEISCVPTRSPQVAL PAFAAVAVTH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11088:SF63 View details on PTHR11088:SF63 Search for proteins/transripts with this domain View external data on PTHR11088:SF63	9	312	304	3.7E-174	–
PANTHER	PTHR11088 View details on PTHR11088 Search for proteins/transripts with this domain View external data on PTHR11088	9	312	304	3.7E-174	IPR039657 Show description in modal box View details on IPR039657 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd18032 View details on cd18032 Search for proteins/transripts with this domain View external data on cd18032	32	63	32	0.00193628	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	34	195	162	1.44E-12	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	35	304	270	1.2E-102	–
Pfam	PF01715 View details on PF01715 Search for proteins/transripts with this domain View external data on PF01715	72	147	76	3.6E-19	IPR018022 Show description in modal box View details on IPR018022 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01715 View details on PF01715 Search for proteins/transripts with this domain View external data on PF01715	156	252	97	6.4E-9	IPR018022 Show description in modal box View details on IPR018022 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.287.890 View details on G3DSA:1.10.287.890 Search for proteins/transripts with this domain View external data on G3DSA:1.10.287.890	165	265	101	1.2E-102	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008033 View details of GO:0008033 AmiGO InterPro QuickGO	Biological process	TRNA processing	The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.	Subterm of View details of GO:0006399 View details of GO:0034470

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0298900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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