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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300400 |
| Transcript ID | LotjaGi6g1v0300400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61806165..61810147) extracted from Lotus japonicus Gifu genome v1.2.
CCCATTCTTCCAATCCAAAGCTCTATCCAGTTCAACATTAATATATCCATTAAGAGATAAAGACAATTTTCGACATTTCA TTTTCTGTAGAGCTTGCTTTCTAACTTCATATGCATACTACGTACTCTGCCTAGCTGGAAGCTAACAAAGAGACTTTCTA GAAAGAGAAAGCAAGCTTTACCTTACAAGTGAGACAGAGAAACAAGTTACCCCTTCCCCAAGTTACCAAAATTGCTAATA AAGCATAGAAAAAAATGCCACATAACAAGCGTGCCCCCTAAGCTCTGCATTCTCTCTCTCATTCTTTCATTCATTCAATT TCTTGTATAAAAACCCCATCTTTCCCCAACACTCTCAAACATTTGCTTTGAACTTGCAAGCAACATACATAACAAGACAT AAGCAGCAACATTCATCTCAGTCCACCAGTTGAATTTCGTTCACTTTTTGTCTCGAAGTGAGCGCTAACGCGAGTCAGCA TTAACCCCTACTTGTACCCAAACATTTACTCATGGATCATAATAGGCTTTCTGTAGAGGGAGAAGCAGAAGGAAGCATTC ATCTACAAATTCATGAGCTTCGCAGGTTAAGCGAGACGAGCAAATGCAGCACAATGTTCGAGCCTCGAGGGGTTAGCATC ATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAACAGAAACAGCACCAGAAAAGAAGCTAAC CTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAACTCTCGGTTTCATATGGGCAACCGTTG TCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATCACCATCATACTCTTGATTGAAGGAGCC AGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTCCATCTCAGATGATGGAATCAAAAGTTT CAGGTCCAGTTCAAGCTTTCTCTTGCAAAGACTCAAGAGCCTTTGCAGACCTATTGCAGTGATCAGGAAGAAAAGAAGTG AAACGGCGGAGGGTGGTGTTGTAACCCCGAGGTATAGGGATAATGCCACATGTTCTAGGACACCGACTCGCACTTGGATT AGCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCAGCAAGATTCTCTATTGGCTTCA GCTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAATTATGGAGAGGTTGCTAAAGGAG ACACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGCAGAAGCTCTGTTGTTCTTAACT GAGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACCAAGAGTGTGAGTTAGGGCCTTC AGGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGAAGCATATTTGATGGGTTGAAGA TGGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCTCATTGGGGCGAGAATTCTTCGC CAATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCATATCTGTGGTGGAGAGACTAGT TGAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAGATTTTGTCAGCATTAGCCGGCA AGAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATCTCTTCTCCAGACTAACAGGAGT TCTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTTATGGTTTCTGGACATTCAACCA CTTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATTGGAAACACAAGAGGCCTGCTCC CAAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTACTCCAACCCAGATTCTGACACTG AAGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGCAACTTAGGAAAGAGATTTCAGA GATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCCTTGTTGCAGAAACTAAGCATAG AGATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGGTGGAGTGCTTAAAGAATTGTTC AATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTGGCCAGGCCCTAGCAATGTTGGC ATTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTGGTATTTGCATTGAAAGTTCCGC TGCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGATTCAGAATGCTTCAACCAGCTT AAGAGGGTTACAGCTGCAGCACCCACAGTAAGTGTTACTCTAACCATTCTAATTATGAGCTACCAGCATTTGAGATTTTT ATTATGTGTCTATTCTATCCAACAAAATCACACATGAAAGAAAGAAAAGTTTGATCAATCTTAAACCATTTACCATGCAG GTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGACTTGCAGCAAATGTTTTCACATTCAT GACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGAACTAGCAAATAAATTAGTCCAGATTC TGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGATAGAGCTGGCGATTTGGATGATGAAA GACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTGGAGGGTGTCCTAGAGACCACATCAGA GCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCTAACCATTCACTCACTGGTTGAGACAG CATTGAAGTTGTTGGAAGATTGGTAAAATAATCAAACACAGAACATCAATGCAAAACCAGAAATCCATGTTACTCAGCAA TCATTGTAATAGAGTACTTTGTACATATGTGTGTGTAAAAGCTAGGCTGACTAAGTAATTCATTCATTAATTTTTTTTTT CTTCCAGATTCAATGTATTTGAACTAAATTATCCATATTTCCTCTGTATTGTTAAATGCTATATTATACTAACCTGATAT TTTACTGGTAATTTCTAAATGCTATATTATAACATATTAACATCTTTTGGCCAAACAGGTATAAGAATAATATTTGATTG CTGCTTCTCTCCTTCTGCGAAAATTTGCATGTAGTGTCCCAACAAAGTTTCATAGTTATATAGGTACTCGATATTTGGTG CTGCTGTTGAGGCAGGCAATGAAATTTATTATAACAACATACCAGACAAGAAAGTTGAGAGAGAAATTTGGAAGAAGTTG GCATCATTAGCCAAACCAAAAAATTATAACCATTTTCCCAATATCAAGTGTGTCTGGATACCACTTGAGTGCAACGTGGA CGGATTTTTATTCCAATCCATTTGAAGAATCTCGTTCACTTTTTGTAGTGGTCACAACGGATATCCAAACAGTACACATT CAAATGAAACCAACACATGAAGTGCCGAAAACAGTCACATCACAGAATCGTACTAGGATGGTGCTCTCAATCCTTACTCA CAACTTAATTACAATCTACTAGACCAAAAAAAATGTTGTGGACTCTAGATCAACATCCTAGGAAATCACTTTGGAGACAA CTCCTGCACCAACTGTCCTGCCTCCCTCTCTCAAAGCAAATCTTTGTCCTGTTATTCAATTAA
CDS sequence (LotjaGi6g1v0300400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATAATAGGCTTTCTGTAGAGGGAGAAGCAGAAGGAAGCATTCATCTACAAATTCATGAGCTTCGCAGGTTAAG CGAGACGAGCAAATGCAGCACAATGTTCGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACA ACTCTCTTGATTCACCAACAACAGAAACAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAA AAAGCAGCAACAGGGTTAGGAACTCTCGGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGA CAAAACCGATTTCTGGTTCATCACCATCATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGT GGCAGCACCAAGCCACATGGTCCATCTCAGATGATGGAATCAAAAGTTTCAGGTCCAGTTCAAGCTTTCTCTTGCAAAGA CTCAAGAGCCTTTGCAGACCTATTGCAGTGATCAGGAAGAAAAGAAGTGAAACGGCGGAGGGTGGTGTTGTAACCCCGAG GTATAGGGATAATGCCACATGTTCTAGGACACCGACTCGCACTTGGATTAGCTCAGATGTTCCACTTCTACCTTATGCTA AATGGTTTTTCCTTTCAAGGAATATCAGCAAGATTCTCTATTGGCTTCAGCTTCTTTCTGCAACAGCTTGTGTGGTTCTT TCATCAATTAAGCTTGTGATACACAATTATGGAGAGGTTGCTAAAGGAGACACTGACAAGAGGAATAGAGCATCTGCTCT GAACATCTTTTATGCTCTGGCACTAGCAGAAGCTCTGTTGTTCTTAACTGAGAAGGCTTACTGGGAGTGGAAAATCAGCT ACTGTGAGCTCTTGGATGAGGTTAACCAAGAGTGTGAGTTAGGGCCTTCAGGGATGGTTTCCATCAGAAGATTCTTTTAT GATGCTTATTCAAGGTGTGTCAATGGAAGCATATTTGATGGGTTGAAGATGGACATGGTCTGTTTCGCCATGGATCTCTT GGCTTCAAATTCACCTGATGAACAGCTCATTGGGGCGAGAATTCTTCGCCAATTCGCGGTCAGTGAGCGGTTTTCTGATG ACACGCTTCAGAAGATTGGAATTTCCATATCTGTGGTGGAGAGACTAGTTGAGATGTTGAATTGGGATGATCACAAGGAG GAGGAAATTAGGCTATCAGCTGCGGAGATTTTGTCAGCATTAGCCGGCAAGAAGCAGAACTCGCTCCGCATAGCCGGGAT ACCAGGAGCTATGGAGTCAATTTCATCTCTTCTCCAGACTAACAGGAGTTCTATACCTGCAGCTGATGAAATTGGAGAAA AGAAACTCATTTTAGATCACCCCAGTTATGGTTTCTGGACATTCAACCACTTGGGACTCCTCATTTTGAAAAAACTTGCA CATGATCATGACAACTGTTGGAAGATTGGAAACACAAGAGGCCTGCTCCCAAAGATCATTGAATTCACTCATGCTGAAGA AAGGTTGCTGAAGAATGAAAATGTTACTCCAACCCAGATTCTGACACTGAAGAGATCTCTGCAGCTGGTGAAGATGCTGG CTAGCACAACAGGCGCTAATGGGAAGCAACTTAGGAAAGAGATTTCAGAGATAGTCTTCACAATCAGCAATATCAGAGAC ATTTTAAGGCATGGAGAGAAACACCCCTTGTTGCAGAAACTAAGCATAGAGATTTTAACCAGTCTCGCATTGGAAGATGA AGCGACGGAAAGGATTGGAGGTACAGGTGGAGTGCTTAAAGAATTGTTCAATATATTTTTCAGACAAAGCATACCTGAAA GTCAGAAAGATGTAACAGCTGTTGCTGGCCAGGCCCTAGCAATGTTGGCATTAGAAAGTAAGAGCAATTGTCATCGGATT CTGAAGTTGAAAGTAGTGGAGAGGCTGGTATTTGCATTGAAAGTTCCGCTGCTTCGCGTCAATGCTGCTAGGATTCTAAG AAACTTGTGCATCTACAGTGGATCAGATTCAGAATGCTTCAACCAGCTTAAGAGGGTTACAGCTGCAGCACCCACAGTAC TTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGACTTGCAGCAAATGTTTTCACATTCATGACT TCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGAACTAGCAAATAAATTAGTCCAGATTCTGAA GAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGATAGAGCTGGCGATTTGGATGATGAAAGACG AAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTGGAGGGTGTCCTAGAGACCACATCAGAGCTT GAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCTAACCATTCACTCACTGGTTGAGACAGCATT GAAGTTGTTGGAAGATTGGTAA
Protein sequence (LotjaGi6g1v0300400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHNRLSVEGEAEGSIHLQIHELRRLSETSKCSTMFEPRGVSIIEKRDSGADNNSLDSPTTETAPEKKLTLFALRLAVLE KAATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQATWSISDDGIKSFRSSSSFLLQR LKSLCRPIAVIRKKRSETAEGGVVTPRYRDNATCSRTPTRTWISSDVPLLPYAKWFFLSRNISKILYWLQLLSATACVVL SSIKLVIHNYGEVAKGDTDKRNRASALNIFYALALAEALLFLTEKAYWEWKISYCELLDEVNQECELGPSGMVSIRRFFY DAYSRCVNGSIFDGLKMDMVCFAMDLLASNSPDEQLIGARILRQFAVSERFSDDTLQKIGISISVVERLVEMLNWDDHKE EEIRLSAAEILSALAGKKQNSLRIAGIPGAMESISSLLQTNRSSIPAADEIGEKKLILDHPSYGFWTFNHLGLLILKKLA HDHDNCWKIGNTRGLLPKIIEFTHAEERLLKNENVTPTQILTLKRSLQLVKMLASTTGANGKQLRKEISEIVFTISNIRD ILRHGEKHPLLQKLSIEILTSLALEDEATERIGGTGGVLKELFNIFFRQSIPESQKDVTAVAGQALAMLALESKSNCHRI LKLKVVERLVFALKVPLLRVNAARILRNLCIYSGSDSECFNQLKRVTAAAPTVLQAIMSEENKLQEVMVGLAANVFTFMT SSESRRVFEDSGITEAELANKLVQILKKHKYPPTKVPRIRRFVIELAIWMMKDEAENIQTFTDLGMEEVLEGVLETTSEL ESFNVFSGTVGLNRHNLTIHSLVETALKLLEDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 81 | 81 | - | – | |
| PANTHER | 18 | 832 | 815 | 0.0 | – | |
| PANTHER | 18 | 832 | 815 | 0.0 | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 82 | 105 | 24 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| Phobius | 111 | 127 | 17 | - | – | |
| Phobius | 128 | 224 | 97 | - | – | |
| Phobius | 225 | 246 | 22 | - | – | |
| Phobius | 247 | 265 | 19 | - | – | |
| Phobius | 266 | 283 | 18 | - | – | |
| Phobius | 284 | 833 | 550 | - | – | |
| Gene3D | 336 | 512 | 177 | 4.5E-8 | ||
| SUPERFAMILY | 344 | 797 | 454 | 1.36E-29 | ||
| Gene3D | 513 | 807 | 295 | 3.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0300400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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