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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0300700 |
Transcript ID | LotjaGi6g1v0300700.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glutamine synthetase; TAIR: AT5G35630.1 glutamine synthetase 2; Swiss-Prot: sp|Q9XQ94|GLNA2_MEDSA Glutamine synthetase leaf isozyme, chloroplastic; TrEMBL-Plants: tr|Q8GT61|Q8GT61_LOTJA Glutamine synthetase; Found in the gene: LotjaGi6g1v0300700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61826911..61830867) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACAGATTTTGGCACCCTCGACGCAATGGCAGACGAGAATCACCAAAACCTCTCCCAATGCAAGTCCCATTACATC AAACATGTGGAGTTCTTTATTGTGGAAACAAAACAAGAAAGTTGCACGTGCTTCTAAGTTTAGAGTACTGGCAATCAAGT CTGATGGTAGCACCATCAACAGGCTAGAGGGTCTGCTTAATTTGGATGTCACTCCATACACTGATAAGTTCATTGCTGAG TACATCTGGTATTTCATTATATTCTTCTTTTTCTGTCTTTATCTCATAGTTTGCAAGATCAATTTTTCAATAACTATATC ATTTTTTATCCTTCTATATGAGGATACTAGGTATTTAAAGCTGTGATACTTTTTTTGAAACAGGATTGGGGGGACTGGTG TCGATGTTCGCAGTAAATCAAGAGTATGTTATTTATAATGTGCAAAACTTACTATGAAAAAAACATTCCTACCATTGTTG TCATTTGATTTATCTCATGCTACTCATGACAATTCTATATATATATTTTTCAATTCTCAGACTATATCGAAGCCTGTTTC ACATCCCTCTGAGCTCCCTAAATGGAACTATGATGGATCTAGCACTGGGCAGGCACCGGGCGATGATAGTGAAGTAATTC TATAGTAAGAATCTTTGTTCTGATACTTATATTAATGTTACTAATTACTGCATGCGGGCGCAGTTTTAATTTTAGTCTTT TTTTCCCGCAGTCCTCAAGCAATTTTCAGAGATCCTTTCCGTGGTGGTAACAATATTTTGGTAAGAGCTGTTATACTTGA TATGGGTCTCATGGCATGTTGATTGAAATGGAAATACAGATATTATGAAGTTAATTTGAATTATTTTGTTTTGCAAAGGT TATTTGCGATGCTTACACACCACAAGGTGAGCCTATCCCTACAAACAAGCGGCACAGAGCTGCTGAAATCTTCAGTAACC CAAAGGTTCAAGCTGAAATTCCATGGTATATTATTTTACTCACTGTCTTTACAAAGATAACCACAATTTTGGGATGATAA ATTGCATGATCGAAGAATTAATTCATTTATTTAGGCTTAATATTACTAACTATTATCAGAAGCTAGAAAAATGTAACTTA GTATCTAACTGTTATGATAAACAAGCCTCTTCAATATATGGTGATTTATAGCGAACAAGAAAGATATATGATGACTAGTG ATGCCATGTAATATGCTGACATATATAGTACTTTTTGTCTAGTCTATGATACCTAACAAAATTAGATATTATATTCTTTT TTCCTTCTTCATATGATCACTCACTCAAATAGAAGATACTGAACTTTTGGTGTGGAATTATAATCTTAACAGAAGACATG CTGATGTTGTCTATTGATTGTTCAAAGGTATGGAATAGAACAAGAGTACACCCTACTTCAAACGGATGTGAAGTGGCCTT TGGGATGGCCTGTTGGCGGCTATCCTGGTCCTCAGGTAATGTCACTTCTTGTGTTTTCTTTTCAGTTTTGTTCACATTGC AGGAATTTGTGAATTTCATAAAGTGGATTTAATCAGGTGTTTCTTTATATATCAGGGTCCCTATTACTGTGCTGCCGGGG CTGATAAGTCATTCGGACGTGATATATCTGATGCTCATTACAAGGCTTGCTTGTATGCTGGAATCAACATCAGTGGCACC AATGGGGAGGTTATGCCTGGGCAGGTATATCTCTTGACAGCCAACTTCTTAAGGCTTATGAATGTATATGAAGTTTGAAC TCAGTTTTTGTAACTATTTTTCTGTGAATATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGA TCATATCTGGGCTTCAAGGTACCTCCTTGAGGTAATTCATTTAACCTACTTTTGGTTTGTATATATGAAAAATTAACATG TTGAAATAATCAGTGATGAAAACATGTCACTTTTTTTATTGCTGAATGAGTTTTTGGCACAATAATAATATCTTACTTTT GCTTGTATGGTTCTTATTCATGTGCAGGTGCATTTTAAAAAGTGACTGTTTGCACTAAGCTTGATTTGATGATTTTATAT TGTGTGTTTACATGAGAATTACAACATTTGCTTGTAGTTATGCAGAAGTATCAACATATAATTATTGTCATGTATCTATA TTCTTTTCCTCTTTAGTTCTATCCTCTTCTTTCACAGTCGAAGAAATCAAAGATTGAATAGAATACACTACAAATTAGAT ATTTTTCCCTTTCAATCTATTTCTATACTATTCCTAAGTATCTGTTAAGTGTTAAGAATCTTAAGATCATGAAAGAAATT TTTGCATTCTTAAGCTTATGGCATTTTGCTTGTTACTGAAAATTGTTGACTGTGTTTTGTGTAAAAACAATCTTGTGCAT GTTCTCTTGCCCCTAATCCAATTTTGTATATTTAAATTCTAATTGAATATATTGCGTTTGTCTGTTCTGACAGAGAATCA CTGAACAAGCTGGTGTTGTCCTCACTCTTGATCCAAAACCAATTGAGGTACTATAATGCTTTAGGTTACATTGTTTCTTA TACAGTGCTAATTATACTAATTGTTTTCGTTTTGAACTTGCTAGGGTGACTGGAACGGTGCCGGAGCCCACACCAATTAC AGGTTTCTGTCCATGCCTTTGTCATGAATCATGATTGTATGTGTTTATCTTATTGACATGATAAATCACTAAGCTGATAA ATATCATTTGCTTTTAGCACAAAGAGCATGAGGGAAGAGGGAGGCTTTGAGGTAATCAAGAAGGCAATTTTGAATCTATC CCTTCGCCACCAGGACCATATTCGTGCTTATGGAGAAGGAAATGAGAGACGATTGACGGGAAAGCATGAAACAGCCGACA TTAACACATTTTCTTGGGTACTGTTTCATATTTTCCAATACCTATTCTTGTAAAAGACAGAGTATTCAAGCATAAAGTTT TTCTTCTTGTGTGAAACATCCTAATGAAGTTGATTGCAGGGAGTGGCTAACCGGGGTTGCTCAATCCGTGTGGGAAGAGA CACAGAGAAGGAAGGAAAAGGTTAGTCACCACCAATAGTTCTACGGTTTGTTTAGAGGGTCTAGTTCAATGAACAGTACA AAATTATAGAATTGACATGTTTGGATTAGCTTCTTTTATCTCATAATCAATTATGTAGCATTTTGTGCTTAACTGAATTA ACTAGCTAAAAAAAATTGAGTAGCTTAAACATTTTGAATAATTGCAAATTTGCCAATGCAACACCTTGGCTTACCATCAG GCTTATGGATTGGCATTGTGTTGCAAAATCACTTGCCTTTGTTTCCTAATAACTTTGTTTTTGCATCATGTTTATATTAG CTTTTGCTTCAATGGAATCAATTCTGAAATGCAGTAGCTACTCTTCTCTCCAGAATTGATTCTGACTTCAGAATCAATTG TAGAAGAATTTCCAAACATGCACTTAGGAAATTGCAATTACCATGTATTTGATTGTTTACCTTGCATATCCTCTTGATTG TAGGTTACTTGGAAGACAGGCGCCCTGCTTCAAACATGGATCCATATGTTGTGACAGCATTGCTGGCAGAGACTACCTTG TTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATACAATTGAAGGTCTAAATCTATTGATTGATGGC ATTCTTGATGGAGAGCACGTACACTTTCCTTTTAGATTATCTACATTCTGAAGATCTTGTTTGGACAAAAGAGGCTCCTA TGCCCAGTTATTGATTGTCAAATGAAATGTGCACTGTATATCATAAATTCTGTTGGTTATGTTTGCATCTGGACAAACAT TGATGCTTGGTTATATTTCAGTGTTCCTTCGGATTTGATTTTGTTCTTTTCCTAGAAGTAACTGAGGCTAAACCAAAAGA AATATAGCAAGCATTCCAATTTCACAATTTTTTTGGG
CDS sequence (LotjaGi6g1v0300700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAGATTTTGGCACCCTCGACGCAATGGCAGACGAGAATCACCAAAACCTCTCCCAATGCAAGTCCCATTACATC AAACATGTGGAGTTCTTTATTGTGGAAACAAAACAAGAAAGTTGCACGTGCTTCTAAGTTTAGAGTACTGGCAATCAAGT CTGATGGTAGCACCATCAACAGGCTAGAGGGTCTGCTTAATTTGGATGTCACTCCATACACTGATAAGTTCATTGCTGAG TACATCTGGATTGGGGGGACTGGTGTCGATGTTCGCAGTAAATCAAGAACTATATCGAAGCCTGTTTCACATCCCTCTGA GCTCCCTAAATGGAACTATGATGGATCTAGCACTGGGCAGGCACCGGGCGATGATAGTGAAGTAATTCTATATCCTCAAG CAATTTTCAGAGATCCTTTCCGTGGTGGTAACAATATTTTGGTTATTTGCGATGCTTACACACCACAAGGTGAGCCTATC CCTACAAACAAGCGGCACAGAGCTGCTGAAATCTTCAGTAACCCAAAGGTTCAAGCTGAAATTCCATGGTATGGAATAGA ACAAGAGTACACCCTACTTCAAACGGATGTGAAGTGGCCTTTGGGATGGCCTGTTGGCGGCTATCCTGGTCCTCAGGGTC CCTATTACTGTGCTGCCGGGGCTGATAAGTCATTCGGACGTGATATATCTGATGCTCATTACAAGGCTTGCTTGTATGCT GGAATCAACATCAGTGGCACCAATGGGGAGGTTATGCCTGGGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGA AGCTGGTGATCATATCTGGGCTTCAAGGTACCTCCTTGAGAGAATCACTGAACAAGCTGGTGTTGTCCTCACTCTTGATC CAAAACCAATTGAGGGTGACTGGAACGGTGCCGGAGCCCACACCAATTACAGCACAAAGAGCATGAGGGAAGAGGGAGGC TTTGAGGTAATCAAGAAGGCAATTTTGAATCTATCCCTTCGCCACCAGGACCATATTCGTGCTTATGGAGAAGGAAATGA GAGACGATTGACGGGAAAGCATGAAACAGCCGACATTAACACATTTTCTTGGGGAGTGGCTAACCGGGGTTGCTCAATCC GTGTGGGAAGAGACACAGAGAAGGAAGGAAAAGGTTACTTGGAAGACAGGCGCCCTGCTTCAAACATGGATCCATATGTT GTGACAGCATTGCTGGCAGAGACTACCTTGTTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATACA ATTGAAGTGTTCCTTCGGATTTGATTTTGTTCTTTTCCTAGAAGTAACTGAGGCTAAACCAAAAGAAATATAG
Protein sequence (LotjaGi6g1v0300700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQILAPSTQWQTRITKTSPNASPITSNMWSSLLWKQNKKVARASKFRVLAIKSDGSTINRLEGLLNLDVTPYTDKFIAE YIWIGGTGVDVRSKSRTISKPVSHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFRDPFRGGNNILVICDAYTPQGEPI PTNKRHRAAEIFSNPKVQAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYA GINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYLLERITEQAGVVLTLDPKPIEGDWNGAGAHTNYSTKSMREEGG FEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWGVANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYV VTALLAETTLLWEPTLEAEALAAQKIQLKCSFGFDFVLFLEVTEAKPKEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 26 | 429 | 404 | 3.8E-248 | – | |
PANTHER | 26 | 429 | 404 | 3.8E-248 | – | |
Gene3D | 59 | 161 | 103 | 3.1E-43 | ||
SUPERFAMILY | 78 | 160 | 83 | 1.83E-18 | ||
Pfam | 80 | 155 | 76 | 7.8E-10 | ||
ProSitePatterns | 113 | 130 | 18 | - | ||
SUPERFAMILY | 161 | 411 | 251 | 1.18E-67 | ||
SMART | 161 | 409 | 249 | 5.2E-57 | ||
Gene3D | 162 | 414 | 253 | 2.7E-130 | – | |
Pfam | 185 | 313 | 129 | 1.9E-10 | ||
ProSitePatterns | 295 | 311 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Glutamate-ammonia ligase activity | Catalysis of the reaction: L-glutamate + ATP + NH(3) = L-glutamine + ADP + 2 H(+) + phosphate. | ||
Biological process | Glutamine biosynthetic process | The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid. | ||
Biological process | Nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. |
Expression pattern of LotjaGi6g1v0300700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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