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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0302100 |
| Transcript ID | LotjaGi6g1v0302100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A0S3S3G5|A0A0S3S3G5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61939641..61945134) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGAGGTCACGATTTGATCAACACTTGTCTCCCCGACGAGTTAATCGTCGAGATCTTCCACCATATCGAGTCCAAATC CACCCGCGACGCCTGCTCCCTCGTCTGCAGACGGTGGCGCCGCCTTGAGCGTCTCTCTCGATCATTCATCCGCATCGGCG CCACCGATTCCCCTGACCTCTTCGTCCACCTCATCTCTTCCCGCTTCTCCAATGTCACCACCGTTCACATCGACGAGCGC ATCTCCGTTCCGCTTCCCCTTAGTGAACTCGTAAGTTTCTGAATCATCATACCCAATTCTCCATTCACGTTTAATTCTGC AAATTGATTGAAAGTTTTGAATGTTTGATTGGTTTGTTTGGTCGATTTTTGTTTTTTTGAGCAGGTGAAAAAACCCGATA AGGGAGCGTCTTCTTCTTCGGCGCTGAAGCTGCATTACATGAAGGAGAATAATGGGTCTACTTCTGCTGAGGGAGATTTC GATTCGCTATGCTTGTCTGATGCTGGATTGTCTGCTCTCGCGAATGGGTATCCTAAGCTCCAGAAGCTGAAGTTGATTTG GTGTTCTAATGTCACTAGCAAGGGATTGACATCGCTTGCTCGCAAATGCGTGTCTCTGAAAGCCTTGGACTTGCAGGTTT TCTTTTAATTGATTTTGTTTTCAGCTGATTCGAATTCGATTTGGGATTGCTATCATTTTGCATTGTTATGTCCATGTATT TTGATGGAACTGTGTTGTGCTTCTTTGCAATATTTCATTTGATTCCTGACTTGTTGAGAAGGATAAGTATTTCAACTTAT GTAGAATATACTTATAGTCATTGTAAGATCATTTCAAAATTCAATTTCCTGTAAGTGCTTGTGGAATAGTTTATCTAAAC TGGCTTTTGATCATTTTGATCAATCACATCAATTGAAAAAAGTTCAAACTTTTCTGATAGAAAAAATGTTTCCTAGTGAT TGGCCAAAGAATTTAGATGCTTTGAGTGATAGTTAAGGTTATGTAATAGAAAAGCTAAAAGGGTACTTAATTTGCAGTTT TCTTTTTGATTGAAGCGTTAGTTTATTATCAATGTCCTTGTCTTCTGAAGCATTGCAATTTAAGACCCCCAACACCATTT TCCCTGCCGCTTTATCAATATCTATGATTCTACTAGCTCAATGGCATAGATGATGCATATTTGTTGTTATAATGACTGAG ATTTTCCTTTAGGGTTGTTATGTGGGAGATCCAGGTATGGCTGCTGTTGGACAGTGCTGCAAAAATCTTGAAGATTTGAA TCTGCGTTTCTGTGAAGGCGTGAGTGATAAGGGTTTGGTTGAGTTAGCCGTAGGTGTGGGAAAATCATTAAAATCTCTTG GTATAGCTGCTTGTGCCAAAGTATCTAACATCACAATGGAAGCTGTTGGATCGCACTGCGGATCCCTTCAGACCTTGTCA TTGGACTCTGAGTTCATCCACAACGAAGGGGTGAATGCTGTGGCTAAAGGATGTCCAAATTTGAAAGCTCTAAAGCTGCA ATGTATTAATCTTACAGATGATGCTTTGGAAGCTGTAGGCGTTAGCTGTTTGTCGTTGGAATTGTTGGCTCTATATAGTT TTCAGAGATTTACTGATAAGTAAGCTGTTTTCTCTCATAATTGCTTTTTCAGAACTTTACTTCATTTGATTATGGTTGAA TTCACAATGTCACAATGCTTAACTTTATTTCTCATGATATGTTATGGGATGTAGTGGACTTAGTGCAGGTTGCAAATTCT TTTCTGGTGTTGTCACTTGAATCAACCATTTGTAGGGTTGATCAATTTAAAGGGACTGTTCTAACAAAAAAAAAATCGTG GTTATTTTTTAATTGCTAAGTCAATCTAGAATGGGATAAGACTTGATTGATTTAATATATATATTTCTTTTTATTTTCCT TTTGCATGACCTTTAAGGGAATTTAAAATACAATCTTTTGACTGTACCTGAGGGTACAATCTTATTATATGTCTCTTTTT CTAAATTCGCATTCTGCTAAGAATTCTTCCATTTTTTTCAGTTTTAGTCTTCCATTCTGTTCTAATATTTTTTCTTTTAA TGATGTCTTCCGTTCAGGGGTTTGTGTGCTATCGGGAATGGATGTAAGAAGTTAAAGAATTTGACTTTAAGTGATTGTTT TTTCCTAAGTGACAAGGGTTTGGAAGCAATTGCCACTGGCTGCAAGGAACTTACTCATCTGGAAGTCAATGGATGCCACA ATATTGGAACTTTTGGTCTAGTATCTGTTGGGAAATTTTGCAAGTACGTTTTTCTCTATGCTAAATTGAACCAAAATGTT ATGTATGCCTGGCAACTTTTGGGTGAATCATCATTTGGAATTTGGATCAAGAAGGAAGCAACAGAAGGAGATTTATGTTT GTGCTCTTGGTTTCTCTGCCTCTCATGTGATGATATTTAATTAGTCTTTCGGTGTGCATTTCATTGCATGAACTTTTTGT TGGTTGTGTGTTTGTTAACTAAATATATTTGTATCCACCTGTATTGTTGTTCGTGGATTTTTTAAACTGATAAAGATTCC CAGTGTAAACTGCAAAGACAAAATTCATAGTAGTATGAGTATGAACAGGAAAGTCTTGTTCTATTGATATAGCTGTGTGC CCTGTTGGTGCTGTTAACAGGCCTGCTTTCATGCAAAGAATATAAACATTGGAGACTGCTCCTAATTAACTTTTTTTCTG TGGGCCCTGTTGGTGTAGGAAACAGGCTCACTTTGGAGGAAAAACACGTGCTTTTGGAAATTTGATTGATATTATGTCAA TATTGTTTCTCCAGCAGGCTAACCATCACTGAAAATTTGCTTTGACATGGGGGATTTTATGTATTTTGGACTTGGTTATC AATCTTGTGTGGACTTCACATAGTTCATCTTATCATCCATCTTCTTCTGATCATTCTTGTGCCCAGTACTGATTGGATGT AACTCTTATAGAAATATAAATCTGACACATATAAATGTTGGGGTCTTATATTTGAATATTAGCTCATGATGTTGACATAA TATTTGATGACATAAGTTTCAAAATGTTGAACTTCCATCAATGATGCTAATCTCAGCTTTCTACTGTACAGACATCTCTC TGAGTTAGCATTGCTTTACTGCCAAAAAATTGGCGATGGTGGCCTTCTTAGAGTTGGAAAAGGATGCAAATTCTTGCAAG CTCTTCACTTGGTAGATTGCTCAAGCATTGGAGATGAAGCCATGTGTGCTATAGCTAGGGGCTGCAGGAATTTAAAGAAA CTTCATATCCGTCGCTGTTATGAGGTAATCTGTTCGTGCTTGTTTGGCTTTTTGTGTGAAAACAACATTCTTTTCGTGTA ATATTTCAAAAAAAAAAATTATTCTTCATGGGATGTGGTGATTTCACATTCAGAATTTTTTTTACCTTAACACTATCCAA TCTAAACTCATTCTCACAAACTTACTTTTAGACAATCATTTCCACTTTCCAGTATAAAATTCTGTCATAACTAGTTCTTT CCTAATTCATTTATGTCAAAATTATTCTACAATCCCAACTAGTTATCTCTTTCTGTCCTTGCTCAGTGTCAATCCTATTT TTTAAAAAAAAGGAATTGTTTTTTTAGTTTCTTTCATCCCTTCTATTTGCAGTGCTTTTATCAAGGTTACTTACTAATTG AACTACTACTTGCAGTCTTTTATCTTGGCTTTTAGGCCAACAGATAGAACATTGCTCTGAAGAAGGGATAGAGTATACAA TGTACTATATATGATTCAAATTTCAATGAATTCTAAGCTGAAATTATATGTCCTTATTCTTAAAGATTTTCTGTGGCTTT TAACAAGTTGAATATTTGACACCGTTCTCATATTATCAAGAGAAGATTACAGCCAATTGTTCAAGTTAACTTTGTACTGG TCCTGTGCTGTCCCCTGGCTTTTAAGGCAACATTTTATACCTTGTTGTTATGGCTGTGTATCATAATATGCATTCTGTTG TTTTATTCTTATTATCCATTCTACTTCGCTTCTTTACGCTATGATATGATTAAATTATTCACCTTTCAAAGAGTTGACTT ATGGAAAACTTAGCTGAGAGTATTGTAATACTTGAAAGATTATGTATGCCATTCAAGCAGTAAACAAATTTTGTGTAGTT GACCATTTAGGTTTTATATTAGAGGTTTATAGATTTTTGGCTCTGTCTTTATGTTTCTTGCTTTCTTCCCCGTATTAGAT TGGGAACAAGGGGATCATTGCTGTTGGCGAGCACTGTAGGTCTCTAACTGATCTTAGCATTCGATTCTGTGATAGGTAAA AACCTTATTCCCAGCTTTTTTTTATTCTTCCTCTCCATTGAAATCCTCAGTTACATGTATTCTATTTTCTTAATCTTTAT TTTTATTGTTGTTTTCATTGTTGATGATGATGATTATTTGTGTTAGATCCTTTCTTCTGTAGTTTAGTTTTTAATCAGTC TGCATGCTCTAGATTACTTCTGATGTGTCTACCTTTAATTTCTTTGTTAAATTACTAGGGTTGGAGATGAGGCCCTTATT GCTATAGGTGAGGGCTGTTCCCTCCAATATCTGAATGTGAGTGGTTGCCACAAAGTTGGAGATGCCGGATTGATAGCCAT TGCAAGGGGGTGCCCTCAACTCTGTTATTTGGACGTGAGCGTACTGCAGGTGTGTTTTCCTGTCTCTTTTTATACCAAAG TGATTAATTTCTTTAATTATAGCCCTTTATCATTTGCATTGTACTTCTCATACTTTTTCAGGAATTTCTTGTGCTTTCCT GATTGAGTTTTAGTTTCTACTAAAATATTATTATCAAACATGCCCATGGCCAGCCCAGGACTGCACACACACACACACAC ATAGATAGATAGAAACACATATAGGAGACATGATATCAAACCTTTCCTTTAACATTAGCATGTATGTCTTCTTAACTGAG GCAGATTATTTCAGTGATGTCATAGAAAGTAATTACCTAAATGCCTCTTATCTAATTTTCATGTACTATATTTATGAATC AAATAAAGTTTTTGTGCTTATAGAAGTTCTTAAACAAGAATCTCTGAACCGGACAACTTATAAGCTATACCCCAATGAAG TCTCAGTAGTCAGTAGTCACTACTTGCTTGTTCTTCTTTCATTCTACTTTTCATTGCTTTGCTCAATACAATTGCAGAAT TTGGGTGACATGGCTATGACTGAGTTGGGAGAACACTGTCCATTGATTAGAGAAATAGTCATCTCTCACTGCCGTCAAAT AACAGATGTTGGTTTAGCCCATCTTGTAAAAAGCTGCACCATGCTGGAGTCATGCCACATGGTTTATTGCTCTGGTATAA CTTCAGCTGGAGTGGCCACCGTGGTTTCTAGCTGTCTCAACATAAAAAAGGTTCTTGTTGAGAAGTGGAAGGTTACCCCG AGGACCAAGCGCCGAGCAGGCTCTGTGATTTCCTACTTGTGTGTGGACCTCTAG
CDS sequence (LotjaGi6g1v0302100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGGTCACGATTTGATCAACACTTGTCTCCCCGACGAGTTAATCGTCGAGATCTTCCACCATATCGAGTCCAAATC CACCCGCGACGCCTGCTCCCTCGTCTGCAGACGGTGGCGCCGCCTTGAGCGTCTCTCTCGATCATTCATCCGCATCGGCG CCACCGATTCCCCTGACCTCTTCGTCCACCTCATCTCTTCCCGCTTCTCCAATGTCACCACCGTTCACATCGACGAGCGC ATCTCCGTTCCGCTTCCCCTTAGTGAACTCCAGGTGAAAAAACCCGATAAGGGAGCGTCTTCTTCTTCGGCGCTGAAGCT GCATTACATGAAGGAGAATAATGGGTCTACTTCTGCTGAGGGAGATTTCGATTCGCTATGCTTGTCTGATGCTGGATTGT CTGCTCTCGCGAATGGGTATCCTAAGCTCCAGAAGCTGAAGTTGATTTGGTGTTCTAATGTCACTAGCAAGGGATTGACA TCGCTTGCTCGCAAATGCGTGTCTCTGAAAGCCTTGGACTTGCAGGGTTGTTATGTGGGAGATCCAGGTATGGCTGCTGT TGGACAGTGCTGCAAAAATCTTGAAGATTTGAATCTGCGTTTCTGTGAAGGCGTGAGTGATAAGGGTTTGGTTGAGTTAG CCGTAGGTGTGGGAAAATCATTAAAATCTCTTGGTATAGCTGCTTGTGCCAAAGTATCTAACATCACAATGGAAGCTGTT GGATCGCACTGCGGATCCCTTCAGACCTTGTCATTGGACTCTGAGTTCATCCACAACGAAGGGGTGAATGCTGTGGCTAA AGGATGTCCAAATTTGAAAGCTCTAAAGCTGCAATGTATTAATCTTACAGATGATGCTTTGGAAGCTGTAGGCGTTAGCT GTTTGTCGTTGGAATTGTTGGCTCTATATAGTTTTCAGAGATTTACTGATAAGGGTTTGTGTGCTATCGGGAATGGATGT AAGAAGTTAAAGAATTTGACTTTAAGTGATTGTTTTTTCCTAAGTGACAAGGGTTTGGAAGCAATTGCCACTGGCTGCAA GGAACTTACTCATCTGGAAGTCAATGGATGCCACAATATTGGAACTTTTGGTCTAGTATCTGTTGGGAAATTTTGCAAAC ATCTCTCTGAGTTAGCATTGCTTTACTGCCAAAAAATTGGCGATGGTGGCCTTCTTAGAGTTGGAAAAGGATGCAAATTC TTGCAAGCTCTTCACTTGGTAGATTGCTCAAGCATTGGAGATGAAGCCATGTGTGCTATAGCTAGGGGCTGCAGGAATTT AAAGAAACTTCATATCCGTCGCTGTTATGAGATTGGGAACAAGGGGATCATTGCTGTTGGCGAGCACTGTAGGTCTCTAA CTGATCTTAGCATTCGATTCTGTGATAGGGTTGGAGATGAGGCCCTTATTGCTATAGGTGAGGGCTGTTCCCTCCAATAT CTGAATGTGAGTGGTTGCCACAAAGTTGGAGATGCCGGATTGATAGCCATTGCAAGGGGGTGCCCTCAACTCTGTTATTT GGACGTGAGCGTACTGCAGAATTTGGGTGACATGGCTATGACTGAGTTGGGAGAACACTGTCCATTGATTAGAGAAATAG TCATCTCTCACTGCCGTCAAATAACAGATGTTGGTTTAGCCCATCTTGTAAAAAGCTGCACCATGCTGGAGTCATGCCAC ATGGTTTATTGCTCTGGTATAACTTCAGCTGGAGTGGCCACCGTGGTTTCTAGCTGTCTCAACATAAAAAAGGTTCTTGT TGAGAAGTGGAAGGTTACCCCGAGGACCAAGCGCCGAGCAGGCTCTGTGATTTCCTACTTGTGTGTGGACCTCTAG
Protein sequence (LotjaGi6g1v0302100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGHDLINTCLPDELIVEIFHHIESKSTRDACSLVCRRWRRLERLSRSFIRIGATDSPDLFVHLISSRFSNVTTVHIDER ISVPLPLSELQVKKPDKGASSSSALKLHYMKENNGSTSAEGDFDSLCLSDAGLSALANGYPKLQKLKLIWCSNVTSKGLT SLARKCVSLKALDLQGCYVGDPGMAAVGQCCKNLEDLNLRFCEGVSDKGLVELAVGVGKSLKSLGIAACAKVSNITMEAV GSHCGSLQTLSLDSEFIHNEGVNAVAKGCPNLKALKLQCINLTDDALEAVGVSCLSLELLALYSFQRFTDKGLCAIGNGC KKLKNLTLSDCFFLSDKGLEAIATGCKELTHLEVNGCHNIGTFGLVSVGKFCKHLSELALLYCQKIGDGGLLRVGKGCKF LQALHLVDCSSIGDEAMCAIARGCRNLKKLHIRRCYEIGNKGIIAVGEHCRSLTDLSIRFCDRVGDEALIAIGEGCSLQY LNVSGCHKVGDAGLIAIARGCPQLCYLDVSVLQNLGDMAMTELGEHCPLIREIVISHCRQITDVGLAHLVKSCTMLESCH MVYCSGITSAGVATVVSSCLNIKKVLVEKWKVTPRTKRRAGSVISYLCVDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 47 | 44 | 1.1E-8 | – | |
| ProSiteProfiles | 5 | 52 | 48 | 9.63 | ||
| SUPERFAMILY | 10 | 49 | 40 | 8.5E-8 | ||
| Pfam | 11 | 48 | 38 | 4.9E-9 | ||
| SMART | 11 | 52 | 42 | 1.1E-4 | ||
| PANTHER | 28 | 389 | 362 | 8.8E-106 | – | |
| PANTHER | 28 | 389 | 362 | 8.8E-106 | – | |
| Gene3D | 108 | 197 | 90 | 1.5E-12 | ||
| SUPERFAMILY | 124 | 254 | 131 | 3.74E-9 | – | |
| SMART | 140 | 165 | 26 | 0.032 | ||
| Pfam | 166 | 186 | 21 | 0.21 | ||
| SMART | 166 | 190 | 25 | 9.1 | ||
| SMART | 191 | 216 | 26 | 6.0E-6 | ||
| Pfam | 191 | 214 | 24 | 0.093 | ||
| Gene3D | 218 | 412 | 195 | 1.6E-41 | ||
| SMART | 218 | 243 | 26 | 12.0 | ||
| SUPERFAMILY | 243 | 584 | 342 | 4.19E-51 | – | |
| SMART | 244 | 268 | 25 | 14.0 | ||
| SMART | 269 | 293 | 25 | 3.4 | ||
| PANTHER | 293 | 599 | 307 | 8.8E-106 | – | |
| PANTHER | 293 | 599 | 307 | 8.8E-106 | – | |
| SMART | 294 | 319 | 26 | 0.038 | ||
| Pfam | 320 | 343 | 24 | 0.68 | ||
| SMART | 320 | 345 | 26 | 2.3E-4 | ||
| SMART | 346 | 371 | 26 | 0.85 | ||
| SMART | 372 | 397 | 26 | 0.076 | ||
| SMART | 398 | 423 | 26 | 2.3E-4 | ||
| Gene3D | 413 | 607 | 195 | 3.8E-45 | ||
| SMART | 424 | 449 | 26 | 0.0087 | ||
| Pfam | 424 | 446 | 23 | 1.2 | ||
| Pfam | 449 | 472 | 24 | 0.02 | ||
| SMART | 450 | 475 | 26 | 0.0011 | ||
| SMART | 476 | 500 | 25 | 0.022 | ||
| Pfam | 476 | 498 | 23 | 0.0011 | ||
| SMART | 501 | 526 | 26 | 18.0 | ||
| SMART | 527 | 552 | 26 | 5.6E-6 | ||
| SMART | 553 | 578 | 26 | 4.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0302100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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