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LotjaGi6g1v0302700.1

Overview

Field Value
Gene ID LotjaGi6g1v0302700
Transcript ID LotjaGi6g1v0302700.1
Lotus japonicus genome version Gifu v1.2
Description Peptide methionine sulfoxide reductase msrB; TAIR: AT4G21860.1 methionine sulfoxide reductase B 2; Swiss-Prot: sp|Q10L32|MSRB5_ORYSJ Peptide methionine sulfoxide reductase B5; TrEMBL-Plants: tr|A0A0L9VEM3|A0A0L9VEM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:62005011..62006229) extracted from Lotus japonicus Gifu genome v1.2.

TCCATATGCATGCCACGCGTCTCCACTCCAGAAATCTTAGCTCACTGTCTTTGACCCAATTTTCCGTCCAAGTTCATTTT CTCAGAAAATCTTCCATCTCAATCTGTTTTCACATCCAGGTTCTGTCTCAATCCATCGAGCACTATATATACAACAAAGG CCAGGGCATTCTCCATCATACGCACTCTGCTAGTGACTGTTGTGTTGTGCGGCGAAATCAACCAAAGACAATGGCATCAT CAACGCCTGTTCACAAATCAGAGGAGGAATGGAAGGCCATTCTCTCCCCTGAGCAGTTTCGGATCCTTCGCGAGAAAGGG ACCGAGTGAGTAGTAATTTCCCAATCTCTTTTCTCTTTTGTTGTTCTTCTCTGTGTTTTTTGGATTGGATTGCATGAAAT TGGATTGTAACTTGTTTTGTTACAATGAAAACTTGTGCAGATTGAAGGGTACCGGAGAATATAACAAATTCTATGAAGAA GGAATTTACAATTGCGCTGGATGTGGAACTCCTCTTTACAAGTCTTCTACCAAATTTGATTCTGGTTGTGGTTGGCCTGC TTATTATGAGGGTTTGCCTGGAGCTATCAATCGCTCTGTAAGTGTTTTTTTTCTCGGACTTATTGGATACACGGTGAAAA ATCACATTCACATAAACATCCTCACTTAGCTTTTGGCTTTTGAGGCTGTTTGTCGTGTGTTTTTCATTGTGTATCCAAAC ATGATTCTTGAACATTGAATTTTCCTGTAACATTTTTGTCTGGAACTTGCAATTGAAATGTGATTATGCGTGGAACTTGT TATTGATTTGCAGCCGGATCCGGATGGTAGGAGGACTGAGATAACCTGTGCAGCTTGTGGAGGGCACTTGGGGCATGTTT TCAAAGGGGAGGGATTCAAGACTCCTACTGATGAACGTCATTGTGTCAATAGTGTTTCTGTCAAGTTTATTCCTGGAAAT GCTTCTGCATGAGCCATGAATGTCAAACCGTAGTTTATAGGAGGATTGAAATCTTGTGTTGTTTAGACTTATCTGGTGTA CTGTGGTGATTCTAAAGACTATTTTGATAATAAGCTTGAATGACTTACCATCGATGGTACTTGAATTGAAATAATAAAAT CATTTTGGCAGGATGGATAAACTTATATCTAATTACATTGTGTCCTCTGGTTTGAAATTTGCACGATTTTGGTACTAGTT TTTTTAAACAAAGATTGCG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0302700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATGCCACGCGTCTCCACTCCAGAAATCTTAGCTCACTGTCTTTGACCCAATTTTCCGTCCAAGTTCATTTTCTCAG AAAATCTTCCATCTCAATCTGTTTTCACATCCAGGTTCTGTCTCAATCCATCGAGCACTATATATACAACAAAGGCCAGG GCATTCTCCATCATACGCACTCTGCTAGTGACTGTTGTGTTGTGCGGCGAAATCAACCAAAGACAATGGCATCATCAACG CCTGTTCACAAATCAGAGGAGGAATGGAAGGCCATTCTCTCCCCTGAGCAGTTTCGGATCCTTCGCGAGAAAGGGACCGA ATTGAAGGGTACCGGAGAATATAACAAATTCTATGAAGAAGGAATTTACAATTGCGCTGGATGTGGAACTCCTCTTTACA AGTCTTCTACCAAATTTGATTCTGGTTGTGGTTGGCCTGCTTATTATGAGGGTTTGCCTGGAGCTATCAATCGCTCTCCG GATCCGGATGGTAGGAGGACTGAGATAACCTGTGCAGCTTGTGGAGGGCACTTGGGGCATGTTTTCAAAGGGGAGGGATT CAAGACTCCTACTGATGAACGTCATTGTGTCAATAGTGTTTCTGTCAAGTTTATTCCTGGAAATGCTTCTGCATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0302700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHATRLHSRNLSSLSLTQFSVQVHFLRKSSISICFHIQVLSQSIEHYIYNKGQGILHHTHSASDCCVVRRNQPKTMASST PVHKSEEEWKAILSPEQFRILREKGTELKGTGEYNKFYEEGIYNCAGCGTPLYKSSTKFDSGCGWPAYYEGLPGAINRSP DPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSVKFIPGNASA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46081:SF5
60 208 149 2.2E-88 –
PANTHER
PTHR46081
60 208 149 2.2E-88
IPR028427
Gene3D
G3DSA:2.170.150.20
63 209 147 4.7E-52 –
SUPERFAMILY
SSF51316
83 208 126 1.52E-48
IPR011057
TIGRFAM
TIGR00357
84 208 125 1.0E-39
IPR002579
ProSiteProfiles
PS51790
86 207 122 65.708
IPR002579
Pfam
PF01641
88 206 119 1.6E-47
IPR002579

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006979
Biological process Response to oxidative stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
Subterm of
GO:0016671
Molecular function Oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.
Subterm of
GO:0030091
Biological process Protein repair The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues.
Subterm of
GO:0033743
Molecular function Peptide-methionine (R)-S-oxide reductase activity Catalysis of the reaction: peptide-L-methionine + H(2)O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0302700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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