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LotjaGi6g1v0303900.3

Overview

Field Value
Gene ID LotjaGi6g1v0303900
Transcript ID LotjaGi6g1v0303900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:62134622..62135970) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACGCGGGTCAGATGAAGAGACAGTGGGTGGACTACATCAAATCCCTGTTTGTGGAGGTAAGGCAAATAAGACAGTG TGACAAAATATATTGTTTTTTCTTTTATGGGATTGTGATTGTTAGATGTTGGGGGTGTGTTGTTTTCCATTGTTTGATTT GGTGGGTGTTCTTCTTTGTTGTCTTCTTAAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTCCAAGATGAGA ACAACCCTGAGTTTGTGGTTGAAGTGGTGTCTCTCTTTTTTGAAGATTCTGAGAGGCTTCTCAAAGATCTCTCTTTTGCT CTGTGAGTATTATCCTTGTTTAAATGTTTCCCTTGATCTTTACTAGTTAGTCCATGTTTGGAAATTATTGTACAATTGAT TTTAGAGTGAAAATCAATTATGGGAGAAGCTTATGTTAGTGCCATAATTGATTTAGAAAAAAATAAGTCCATGATACAAT CATGCTTATAGAATGCTGGTTATTAGACATTTGCTCTTAATTGATGGCTGGAACATTTGCATGATTTTTTTTCCATGTTC TTGGGATTTTTCCTGTGCAGAGAGCAGAAAGGTGTTGACTTCAAAAAAGTTGATGCTCACGTTCATCAGTTAAAGGGTAG CAGCTCAAGGTATACAATTTTATTAAAGCAAGCAAATAATGTAAAAAACCTACAGAATCTGAATGAATAGGACTTTTTGT GCCATACCAGCTATGCTTGTGTAGCTGTAGATTCTTAAACGAGTAGTGTTTTTTCTCTGAAAATCACAGTAGACTAATCA AGCTTTACAGCTGAACCTTAATTAAGAAAAATTAAAAAGTAATACAACTTTGTTTAATGTTAAACTTTGTTAGTCTGTTG CATTGTCTTGGTACTGAATCAAATTTGTTTGTCTTATGCACAGCATTGGGGCACAAAGGGTAAAAAATGCCTGCATTGCT TTTCGCAACTTCTGTGAGGAACAGAACACAGACGCGTGAGTATTTAATCTTCAATTTTCAGATAACTTGTTTGATAATTT TGGTCTCCTGAAGAATTAAAAATGAGTGCAGAAGTTTGAATGACAAAGCTAGTTCATGGTCTGATCATGGAAAATTCTAA TTGGTGCAGGTGCCTCAGGTGTCTGCAACAAGTGAAGCAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACACTTATCA GGGTAACTAGATAAAAAAACTTTTAGCTTAAGCACATTCCAATATTCTGGATTTGTTACTTATATTTGTTTCGTGGACAA TTATTGCAGCTTGAGCAACAGATTGTGGCAGCTGGTGGATCAATCCCCATGATGGAACTGAGTTTCTAA 

CDS sequence (LotjaGi6g1v0303900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGCGGGTCAGATGAAGAGACAGTGGGTGGACTACATCAAATCCCTGTTTGTGGAGGGCTTCCTGGATGGTCAGTT TCTGCAACTTCAGCAGCTCCAAGATGAGAACAACCCTGAGTTTGTGGTTGAAGTGGTGTCTCTCTTTTTTGAAGATTCTG AGAGGCTTCTCAAAGATCTCTCTTTTGCTCTAGAGCAGAAAGGTGTTGACTTCAAAAAAGTTGATGCTCACGTTCATCAG TTAAAGGGTAGCAGCTCAAGCATTGGGGCACAAAGGGTAAAAAATGCCTGCATTGCTTTTCGCAACTTCTGTGAGGAACA GAACACAGACGCGTGCCTCAGGTGTCTGCAACAAGTGAAGCAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACACTTA TCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGATCAATCCCCATGATGGAACTGAGTTTCTAA 

Protein sequence (LotjaGi6g1v0303900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAGQMKRQWVDYIKSLFVEGFLDGQFLQLQQLQDENNPEFVVEVVSLFFEDSERLLKDLSFALEQKGVDFKKVDAHVHQ LKGSSSSIGAQRVKNACIAFRNFCEEQNTDACLRCLQQVKQEYCLVKNKLETLIRLEQQIVAAGGSIPMMELSF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 152 152 4.1E-88
PANTHER 1 152 152 4.1E-88
Gene3D 1 154 154 2.4E-61
SUPERFAMILY 5 140 136 4.19E-39
ProSiteProfiles 38 143 106 14.622
CDD 44 123 80 3.07194E-14
Pfam 44 122 79 4.5E-12

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0303900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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