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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.9 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|B3GEM0|B3GEM0_POPTR Putative chloroplast 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62173813..62176183) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGA TGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAG GCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGTAAAAGAGCCACTACAAATTTCTTGACTAGCACC AACATAATTCACCACGTAAATTTATCTTGCTAGGCTCACTCAGCTTTAGAATTTGTTGGAGTATTAATTGCATAGCTCTT ATACCATCTTAAAATTCGTTATACAACTCTGGTAGGCCTAACTCTACCATCTTTAGAATGTATTAGGGTTAGGCCTAGCC CAAATTTTAATAGAATGCACCAAGTACCTCTGAGGCCTGAGCCATCCATTAAAGATATAAAAAAAAATTTAACCTGCCTC TTGACAATTACTGTCAATCACCATGCTTTAATAGTGGATCATAGCCATTTAGTTATTTCTAGAGAAACACACTACCTATA GGAAGCATTTTTAATCTGACTTGCTATATTCATCACAGGCATGTAACTTTGTTTGATTTTTCAGGAGTTACCAAGTTTGA TCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAG AAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTAT TTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCT TAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTAAGATAACAACACACTCTAGTCTCTA CATCTTCATCATAGTATTGCTTTATAGTGTGTTTGGATAAATAGATAGTATTTATTGCATAAGTGCTTACTCATAAGCAA ATTTGAGAAACTTCAATAAGTTCAAAATAGATTATAAGTAGGTCTAAGCGCTTATTCATAAGCTAATCTCAGCAGCGTAT GAAAATAAAACAGCTTATAGGCAGGTCATAAGTTATTTAGTATTTACATAAGCTCTCCCGAACGCTTGCATGAGCACTTA TACTATAAGATAAACTCAAATAAGCAATTCCAAACAGGGCCTAAGTTAATAATGATTTCAAAAAGACATGCACAACATTG ATTTTTGCAAATAATGCTCAAAGTATGTGTTCCATGTCCTTTCCAAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCT GTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTAT GGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCA TTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACT CCTCTTGAGGTAACTTCGAATTTTACCTGCATTCAAAACGTACCTTATGAAGTTGATTAGGAACAATTCTTGCAAATCAA CTTCGTGCGTGTTTGGAAATCTGCATTTGATTCTGAGGAAAAGGAAACTAATCCAACCATGGTATTAACATTTGTGTTCT GACATCTTAACAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTC AGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCA TTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATT TGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGGTATGAAATTTGATGTAAAATA GTTACATTAATTTCTTTTATACTAGCATACATGCACCTTTGAAGTTTCCATCAAAAACTCATGTGCCTTTCATTTAACTA TTGCAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCT TACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGAAAGA AAATGCAACTGGGATGTCTTTCATTCCCCCTTAGTATACAGAGTAGCATGA
CDS sequence (LotjaGi6g1v0304300.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGA TGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAG GCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCAAGTTTGATCCAGCAACTGGGAAACAA TTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGCTGACAAAAA CATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAAGATGCTTTG ATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATT TACTCATCATTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAAT GGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAA ACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCGACCT AGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGATTGG AAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAG CTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATT CGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCA GTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATG GATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAA ACAAGAGAGGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISGSGSTLFEELGLYYIGPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQ FKAKPTTQSYTTYFAEALIAEAEADKNIVGIHAAMGGGTGMNLFQKYFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCVI YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAATIDDRP SCLRYPRGNGVGVELPQWNKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASLLEHHGMHVTVADARFCKPLDHSLI RSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQ TREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 1.6E-254 | – | |
| PANTHER | 1 | 405 | 405 | 1.6E-254 | ||
| Gene3D | 3 | 90 | 88 | 4.5E-12 | – | |
| TIGRFAM | 7 | 398 | 392 | 1.2E-141 | ||
| Pfam | 7 | 51 | 45 | 1.1E-11 | ||
| SUPERFAMILY | 8 | 76 | 69 | 9.1E-9 | ||
| SUPERFAMILY | 60 | 249 | 190 | 1.5E-62 | ||
| SMART | 88 | 253 | 166 | 9.4E-68 | ||
| Pfam | 89 | 249 | 161 | 1.1E-43 | ||
| Gene3D | 91 | 261 | 171 | 4.4E-66 | – | |
| CDD | 105 | 247 | 143 | 7.82175E-69 | – | |
| ProSitePatterns | 194 | 210 | 17 | - | ||
| SUPERFAMILY | 262 | 398 | 137 | 5.1E-34 | ||
| Gene3D | 267 | 399 | 133 | 2.2E-33 | ||
| Pfam | 267 | 390 | 124 | 2.0E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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