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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304600 |
| Transcript ID | LotjaGi6g1v0304600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat protein; TAIR: AT5G04700.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|G7IFK1|G7IFK1_MEDTR Ankyrin repeat protein; Found in the gene: LotjaGi6g1v0304600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62189125..62192820) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTGGCACTTCAAATAATTGTGCGGTACCCAAACCTTGTGAATTCTGCAAATCAGGATGGTTTATCACCTCTACATAT TCTTGCTAGGAAGCCTAATTGTTTCAAAAGCTGCACTCGAATGGAGTTACTTGATCGTATCATCTACTATTGTAAGATCA CTTTCTTCCCAACAAAAATTCCCCATATGCTTTTATGATTATTTGGTTCTTCTCCCGAGAAAGTGACATAAGTATATATG GTGGGCCACAATAAGTAGATATTTGGTGAAAATCACACAAATATACCATGGTTATTTTGAAAATATTTTATGCAGAAATT TTTGAAATCATCAAGTGTAGCCATTAGGTGATGTAATAATACTGATGACTGGTGTTGCTGTCACTGTCAGGTTCAATTGT TGATGAGCACAGGGATGAAACGGATGACCAACATCACAACAAAGAAGACACAGAAACTAAGAACTATCCAATGAACTATG CAACATGCGTGACATCCTTATCTTTGTTGAAGAGTGCATTTGAAATTACAAGTGTGTCCATCTTGTTTCATTTACTAATT TGGTTTTTCACCTAGTCCTTGTAGCTATAGCACATGGCAAACCTAAATCATCTTTTTATGCTGTGTTACAGCAACTGGTA AAGATACAAAAGCTGCAAGTAATGATGAAGAGAATTATGTCTCACCAAAATCAGGTATTATTTTCTATCATAAAGTGTGT TTGGTTCCATGTTCGTGAGCCTTAATATCAACTCTCATTGATTAGAATCTGGTTTAGGTCATTATATAAATGTCTGACAA TTGACTTGGAGAATTGATTTTAGTCCCAAAATCAATTTTGCAGAGAAGTGAGAGAGTATTTTGTGGTAAACATAATCAAT TGTGGGATTTTATAATTTGGATTTCACCATATTACCCTATAGAAATCACTTTTCTAATAAACATATTTAGACATAAATCA CTTACTTTCAACTCACTTTGACTTACTTTTACCACAATCAATCCTAACCAAAATAATTTGACAGCACTGATCCAAACACA CTAAATTAAAATGCTAGCTACCCTTCAAACATATGTAAACACACACAAGTATCAAACGATTCCAAATATTGTAGAATTTC ATGGTATTGATTATTATTAAATTCATTCCGTCTTTTACTGATCACACAGTTTTGGTTTCTAAAGGCATGCATTTTAATGT TAGCTGATGATGAAAGTGGTTATCTTTAGGTAGCTTTGAATGCCCAATTTCCTAAATGTATATATGTATGCAGAACAAGA GCAAGCAAATAAACAAAAGAGACATTATCTGTTCCCTCCCAATTGGGAAGTCATAATTCAAGGCCTAGCCCTCACAATGA AGGCTTTGCTAATCATTTTTGGTGTTGGTAAGTGCATAATCATGAATTGGTCTTCTCATTGTTACTTGTTAGTATATATG AATTAGAAAAGCATGTGTACTTTTTCTTAAATAACTGAGTGGTGCACTCACAGGAGCATCTTGGATTGAGAAAATCCGAC GAAAGAAGTTGAAACATCTGCACGCTAAGCAAGTGATGAATGAAATGATTCAGCGCGCTTCTTTGTACAAGTATGATTGT GCGGGAATGATCAACCCTGGAGCTGAAGAAAATGGTGATGGCAGAGGAAACATCATCAAAAGTAGTAATAATACATATGA AGAAAAAGCCTTTGAGAAAAGGATAGAAGATTCACCAATTTTAATTGCAGCAAAAATGGGAGTGGCTGAAATGGTTGAAA AGATCTTAGATACATACCCTGTGAGCATCCATGATGTGGATTCAGAGAACAAGAATGTTGTTCTTTTGGCCATAGAGAAT AGGCAGCCTCGTGTTTACAAACTGCTAAACAGAAACAGTTTAATCAAGGAGAGTGCATTTCGTCATGTGGATAATCAAGG TAACAGTGCATTGCACCTTGCTGGAACATATAGCAACCTCAAGCCTTGGCGTGTTCCAGGTGCTGCAATGCAAATGCAAT GGGAATACAAGTGGTATAAGGTAAAGTTTCTAAATATCTATCCACCATTAACAGTTTTGGAAATCTTCATAAATCAGCAA ATGGTCTTATCATATGTTTCTTCATGAACAAAAAATTAGTTCATCTAACAATTAATAGTATGGTTGAAACTCTGTTTGGC CTAAGATTTTTGAAGTTCCATTTAGTGTGTGTTTGGTTTCCGTTGGAGAATCTCATGATCAATTCAGATATAGAAAAATC AATTTTGGATGACAAGATAGATGTTTGGTAGTCATTTTGGGAAATTTATTTCAGCCCCAATATCAATTATGCTAGAAGCT AGAGAGAGTAGCTTCTACGTTAAACATATCAATTATGCTAGAATCCTCGCCATGCTAGTCCAAACACGAACTTAATCTAC ACATCTTTCTTTCTGTCACCTACTGCTTTTCAAATGAACAAACGGATAGAAGTTGATATTTCAATTCCAAAATTTCTTTT GTTGGGGCAAGACTTTTGGACTTCTGAAATTTATGCCAATCTGAATGAAAGTGGGTAATAGAAGTGATTCATTTTTTTAG ACTCAGTTCAAGTGATAGGGTTGGTAAGGATTTAAGATTATGGTTGCATGCAGAGGTATAACTTACCAAAAGTGAAGTGG ACTTTAAAGCAAGTGATAGATAAAGTTAAAGCAATTAGAATATATGAAAAATATCTTATAATATCCAAATTAATTTATAG ATGGCTAAGTATAGTTTTTGCCTATGTGCTTTTCAGCTTGTTAAGAATTCCATGCCACCGAATTTCTATGAACGTTACAA TAAGGATGGGAAAACAGCAAAACAGGTCTTCTTAGAGACACATGGACTACTTGCAAAAGAAGGTAGTAAATGGCTAACCA GAACCTCAGAATCATGCTCAGTGGTTGCAGCACTTGTTGCATCTGTTGCATTTTCAACCTCAACTGATATACCAGGAGGT CCTGATCAAAACACTGGCAAGCCATTATTTTTAGGGAGACCTGCTTTCAACATCTTTACCATAGCTTCTCTTGTTGCACT CTGCTCCTCTGTGACCTCCCTAGTTTTGTTTCTCTCAATACTGACGTCGCGGTTCCAAGCAAGGGATTTTGTTGTAGATT TACCAAGAAAGCTTCTTCTGGGACTGACTTCACTCTTGACTTCTATAGCAGCTGTGTTGGTCTCATTCTGCGCAGCGCAT TACTTCACAGTTGAAGGCGGGTTGAAATATGCAGTTTTTCCCATATATGCTGTTACATGTTTGCCTGTGTCATTCTTTGC ACTGGTGCAACTCCCTCTTTACTTTGATCTTATGTTGGCTATGTTTCGGAATGTTCCTCAGCGCAGCTATAAGGTGTCCT CTCATTAGGTGCTTCATCAAATAATTTACTATCTGCTAACACTTTCGGGCTGTACATTTCTCAGTGTAAGGATTTTATAT TTTGTTATATGCAATTATTATGAGCGATATAGCCGCTTTTATATTATTTTGATAGGTGTCCACACCTTTGGAGGCAAGAC TAATCTCATTCGGAAAACTGTGATGATCATTCTTAACAGATAACTTTATTAGGGCTGAAACTTGTGTTTTCATTCTTACG GACGTCTAGCTTGCCTACCATTAAACAAAAACAATGTTGGTGTATAGCAGCTCTTATGAGGCAATTATTTTATTGCCGTA AGGATGATTTTTTAAA
CDS sequence (LotjaGi6g1v0304600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCTTTGCTAATCATTTTTGGTGTTGGAGCATCTTGGATTGAGAAAATCCGACGAAAGAAGTTGAAACATCTGCA CGCTAAGCAAGTGATGAATGAAATGATTCAGCGCGCTTCTTTGTACAAGTATGATTGTGCGGGAATGATCAACCCTGGAG CTGAAGAAAATGGTGATGGCAGAGGAAACATCATCAAAAGTAGTAATAATACATATGAAGAAAAAGCCTTTGAGAAAAGG ATAGAAGATTCACCAATTTTAATTGCAGCAAAAATGGGAGTGGCTGAAATGGTTGAAAAGATCTTAGATACATACCCTGT GAGCATCCATGATGTGGATTCAGAGAACAAGAATGTTGTTCTTTTGGCCATAGAGAATAGGCAGCCTCGTGTTTACAAAC TGCTAAACAGAAACAGTTTAATCAAGGAGAGTGCATTTCGTCATGTGGATAATCAAGGTAACAGTGCATTGCACCTTGCT GGAACATATAGCAACCTCAAGCCTTGGCGTGTTCCAGGTGCTGCAATGCAAATGCAATGGGAATACAAGTGGTATAAGCT TGTTAAGAATTCCATGCCACCGAATTTCTATGAACGTTACAATAAGGATGGGAAAACAGCAAAACAGGTCTTCTTAGAGA CACATGGACTACTTGCAAAAGAAGGTAGTAAATGGCTAACCAGAACCTCAGAATCATGCTCAGTGGTTGCAGCACTTGTT GCATCTGTTGCATTTTCAACCTCAACTGATATACCAGGAGGTCCTGATCAAAACACTGGCAAGCCATTATTTTTAGGGAG ACCTGCTTTCAACATCTTTACCATAGCTTCTCTTGTTGCACTCTGCTCCTCTGTGACCTCCCTAGTTTTGTTTCTCTCAA TACTGACGTCGCGGTTCCAAGCAAGGGATTTTGTTGTAGATTTACCAAGAAAGCTTCTTCTGGGACTGACTTCACTCTTG ACTTCTATAGCAGCTGTGTTGGTCTCATTCTGCGCAGCGCATTACTTCACAGTTGAAGGCGGGTTGAAATATGCAGTTTT TCCCATATATGCTGTTACATGTTTGCCTGTGTCATTCTTTGCACTGGTGCAACTCCCTCTTTACTTTGATCTTATGTTGG CTATGTTTCGGAATGTTCCTCAGCGCAGCTATAAGGTGTCCTCTCATTAG
Protein sequence (LotjaGi6g1v0304600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKALLIIFGVGASWIEKIRRKKLKHLHAKQVMNEMIQRASLYKYDCAGMINPGAEENGDGRGNIIKSSNNTYEEKAFEKR IEDSPILIAAKMGVAEMVEKILDTYPVSIHDVDSENKNVVLLAIENRQPRVYKLLNRNSLIKESAFRHVDNQGNSALHLA GTYSNLKPWRVPGAAMQMQWEYKWYKLVKNSMPPNFYERYNKDGKTAKQVFLETHGLLAKEGSKWLTRTSESCSVVAALV ASVAFSTSTDIPGGPDQNTGKPLFLGRPAFNIFTIASLVALCSSVTSLVLFLSILTSRFQARDFVVDLPRKLLLGLTSLL TSIAAVLVSFCAAHYFTVEGGLKYAVFPIYAVTCLPVSFFALVQLPLYFDLMLAMFRNVPQRSYKVSSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 268 | 253 | - | – | |
| PANTHER | 59 | 382 | 324 | 2.2E-126 | – | |
| PANTHER | 59 | 382 | 324 | 2.2E-126 | – | |
| Gene3D | 62 | 228 | 167 | 3.2E-8 | ||
| SUPERFAMILY | 83 | 165 | 83 | 1.04E-6 | ||
| Pfam | 224 | 336 | 113 | 1.1E-25 | ||
| Phobius | 269 | 292 | 24 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 293 | 311 | 19 | - | – | |
| Phobius | 312 | 335 | 24 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 336 | 346 | 11 | - | – | |
| TMHMM | 346 | 368 | 23 | - | – | |
| Phobius | 347 | 369 | 23 | - | – | |
| Phobius | 370 | 389 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0304600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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