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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0309600 |
| Transcript ID | LotjaGi6g1v0309600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0309600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62737499..62739244) extracted from Lotus japonicus Gifu genome v1.2.
CGCAAACACCACTCTTGCATTGTTGAACTCATGCAAAAAGCCCGCATGGTCAAGACCACTCTCAGCAAGCTTCTCTATGC TTCCATTCTCGATATGGACTATGCAACCTCCATTTTCAGCGACATTCAAACCCCCAATCTTTGTTTGTTGATGTTAAGAA TACCCTTTTGCGTTTCTATTGTGCTTGTAGAAGAATTGAAGATGCACATAAGCTGTTTGATGAGTTTCCTGAAGGGAATG ACTTGGTCTCTTGGAATTCGGTTTTTGATTTGTTTACGAAGATGTGTTGGAGTGGGCTTATAGCTAGTGCTGCCACCGTC TTGATCCTTTTGCCAGCAGCCGGTGATACAGGGAACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTATATCCAAATTGG ATTTAGTTCTCATTTAAATGTCCTTACTGCATTGATAGATATGTATGCGAAAACAGGACTTGTGCATTGGGGGCGTAAGA TTTTTGATAGTCTTGTTGATAAGGATGTTGTCTTATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTCTGGTAGGA GAAGCATTGTATTTATTACAGAAAATGAGAATTCAAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTTAGC TTGCCCTGCATCCGAATCTATACATCTAGTTCGTCACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAA TTCTGGGAACAGCTCTAGTTGATATGTGTGCTAAATGTGGCTTTCAAGATGAGGCTATGGGCATATTTGAGAGGATGGAA GATAAAGATGTGAAATCTTGGACAGCCATGATTTCAGGTCATGGAGTTCATGGCCAGCCAACTAAGGCCATTAAACTTTT CAATAAGATGGAGAACGGGGGGTTTAGACCAAATGTAGTCACCTTTTTGGCAATTCTGACTGCTTGTAGTCATGGAGGAC TTGTAATTGATGGGATGGATATTTTTAAGCGCATGGTTCAGGAATTTGGCTTTTCACCACAGATTGAGCAATATGGATGC CTTATTGATCTCTTGGGTCGAGCAGGAATGCTACATGAAGCATATAAACTAATCAAGAGCTTGCCAATTAAGGGTGATGC TACTGCATGACGTACACTGCTTTCTGCTTGCCGAGTCTATGGAGATGTTAAATTGGCGGAATGTGTGAAAGATGTCTTAG ACAACATTTATGCAGTGCATCCAACAGATTCCCTCCTCATTTCTAGCACTTATGCAGCTGCTGGAAGAATCTCAGATCTT ATACCAATGCAAGAAATAAAACAAACAAATGTTATAGTAGAAAATTATGGGTTACATGAAAAAAGGGAGGAAGTACAGTA AAGGAAGCTGGACTCAGCAGGGTTGTAATTGATAATTAGGGATATAAGAATACTATAGGTTCACCAACAAGCATTATCTC TATTACACAAAATGGTGGCCTCTGTTGTGCACGAAAACTGCAAATGCAAGGTCTGATTACGATAGGTTGACTGTAATAGT CCTTTCTTCAATTGCTTTTGTTGGTTTTGACTTTTGACCATATATAAGATTTTAAACTTTATGTTGAAATTTATTCACAA GTTAGAAACTGAGAGTGAGGACAGAGGGTGAAGCACTGGTATCATTTAAGGATTTGGGCTCATCCATTGGTAGAAGCCTC TAAAAATCTGGATTCAAAAAATCCATTGAAGATACCGGCAAAAACAATTCCTCTTGTGAGGGCAGG
CDS sequence (LotjaGi6g1v0309600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTGGAGTGGGCTTATAGCTAGTGCTGCCACCGTCTTGATCCTTTTGCCAGCAGCCGGTGATACAGGGAACTTTGT TGTTGGGAAGTCCCTCCATGGTTACTATATCCAAATTGGATTTAGTTCTCATTTAAATGTCCTTACTGCATTGATAGATA TGTATGCGAAAACAGGACTTGTGCATTGGGGGCGTAAGATTTTTGATAGTCTTGTTGATAAGGATGTTGTCTTATGGAAT TGTTTAATAGGAAATTATGCAAGGAATGGTCTGGTAGGAGAAGCATTGTATTTATTACAGAAAATGAGAATTCAAGGAAT GAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTTAGCTTGCCCTGCATCCGAATCTATACATCTAGTTCGTCACGTTA CTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAATTCTGGGAACAGCTCTAGTTGATATGTGTGCTAAATGTGGC TTTCAAGATGAGGCTATGGGCATATTTGAGAGGATGGAAGATAAAGATGTGAAATCTTGGACAGCCATGATTTCAGGTCA TGGAGTTCATGGCCAGCCAACTAAGGCCATTAAACTTTTCAATAAGATGGAGAACGGGGGGTTTAGACCAAATGTAGTCA CCTTTTTGGCAATTCTGACTGCTTGTAGTCATGGAGGACTTGTAATTGATGGGATGGATATTTTTAAGCGCATGGTTCAG GAATTTGGCTTTTCACCACAGATTGAGCAATATGGATGCCTTATTGATCTCTTGGGTCGAGCAGGAATGCTACATGAAGC ATATAAACTAATCAAGAGCTTGCCAATTAAGGGTGATGCTACTGCATGA
Protein sequence (LotjaGi6g1v0309600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCWSGLIASAATVLILLPAAGDTGNFVVGKSLHGYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWN CLIGNYARNGLVGEALYLLQKMRIQGMKTNSSTFVGLLLACPASESIHLVRHVTSFIEEEKLQLDAILGTALVDMCAKCG FQDEAMGIFERMEDKDVKSWTAMISGHGVHGQPTKAIKLFNKMENGGFRPNVVTFLAILTACSHGGLVIDGMDIFKRMVQ EFGFSPQIEQYGCLIDLLGRAGMLHEAYKLIKSLPIKGDATA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Gene3D | 8 | 126 | 119 | 1.4E-15 | ||
| PANTHER | 13 | 125 | 113 | 3.1E-62 | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 282 | 261 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| ProSiteProfiles | 44 | 74 | 31 | 6.051 | ||
| Pfam | 74 | 120 | 47 | 1.9E-8 | ||
| ProSiteProfiles | 75 | 109 | 35 | 10.698 | ||
| TMHMM | 76 | 98 | 23 | - | – | |
| TIGRFAM | 77 | 109 | 33 | 1.0E-6 | ||
| Gene3D | 127 | 280 | 154 | 5.1E-32 | ||
| PANTHER | 136 | 271 | 136 | 3.1E-62 | – | |
| ProSiteProfiles | 145 | 175 | 31 | 8.32 | ||
| Pfam | 175 | 223 | 49 | 1.0E-11 | ||
| ProSiteProfiles | 176 | 210 | 35 | 11.805 | ||
| TIGRFAM | 179 | 212 | 34 | 4.7E-8 | ||
| TMHMM | 207 | 229 | 23 | - | – | |
| ProSiteProfiles | 211 | 246 | 36 | 8.561 | ||
| TIGRFAM | 213 | 246 | 34 | 0.0024 | ||
| ProSiteProfiles | 247 | 281 | 35 | 7.114 | ||
| Pfam | 251 | 274 | 24 | 0.013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0309600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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