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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0311000 |
| Transcript ID | LotjaGi6g1v0311000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine protease; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62958675..62962683) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATCCGTCACAAAATCCCAGTGTATAATCAATTTAAAAGGAATTAGCGACGGATATTTTATCCGCCACAAAATTCTT CTGAATCAAAAGGAATGGTTATCCTGTGAGCACTTAGATAAAAGTGCTAGCCACTGTGGAACAACCACCATGGCAATGTT TTCTATTTCTCTCCACAGTAAGCACTTTCCGTCGCCAATGCTAACCACTCCCTCTTCAACAAAGTGCCTTCCCTCTGCCA CTGCCGCTATTACTAGCAGACGAGCTATGGTCTTTGGTTCTGGTCTTGTAATAGCCTCCTGGTTCAATTTGGCCAATCTC AATTCACCACCACTTGCACTTGCAGAGTTGCTACAGGATGAGCTTCAGCAAGAAGAAGATAACCTTGTGCAACTGTTTCA GGTTGATTTTTTTGTGAAACCCCTTTAGCTTCAAGTTGTGATGGGTTGAAGTGAAACTGGAAAAAAAAAATTAAGTTGCT TGCTTTTCTTCATGTATGCTTAATTTTGGAAATTGGGTGTATGGGTTTTGAATGATTCATGCCCAGATTGCTTATATTCA TTTTTCTCACCTCTTTTTTGTACATTTTGATCATTATTCTTATACATTATATGGTTTAGAAGTTGCTCTCACTGGCCATT CTTTCTTAGAATTGCTTCTCCATATTTTCATTTATCTGGCTTAGAAACTAGGTAATATGAAGAAGAAAAAAAATTACTTA TGAGTTATGAGTTATGACACACTTTCAACACTGTTATTAGCTTAATGCTCATGTTATATATGTTTTTTTATCAAATTGCC AAATGATGGTTTTTGTTCTTGTTCTCTAATTGGGATTATCTCAGGAAACTTCACCGTCGGTTGTTTTCATTAAAGATCTT GAGTTGACTAAAGTCCCAAAGACTTCTTCTGATGAAGTCATGCTGAATGAGGATGAAGATGCAAAAGTGGAAGGCACTGG TTCAGGCTTCATTTGGGATAAATTTGGTCATATAGTAAGGGAAAAAAATCAAAAAAGGAATCACTTTTTCTTTATTTTAA TTTTATGAGACTATGTATCTTATTGGATAAATTATTGCTTGCTAGATGTTATAGTGATGCTTTTAATTCATAGACGATTT TATTATGCAAAACGGCTCAATGAGTTTCAAATTCCTTTGGGCATTGTCTTTGATTGTACAATTACATTGGCTTTTTTGGT GGACAGGTCACCAATTACCATGTTGTTGCTAAACTGGCTACTGATACAAGTGGTTTACAACGTTGTAAGGTTTTCCCTTA TGCTGTTAATTCCTTCATACTTCATATTTTAGATGGAAGAAACATAAGTCTGTTTTCCTGTATTTTCCATCATTTAGTTT ACTTGCATCTATGCTCGTATTTCTGTCTACAGGTGTTCCTAGTTGATACCAAAGGAAATAGCTTTTACAGGGAAGGGAAA ATAATTGGGTTTGATCCAGCATATGATCTAGCTGTCCTCAAGGTAAAGTGATAAACATTCCAATCCTCTTCTTTTTCTTC TTCTGTGTTCTTCCCCTTTTCTGAGCATTTGTTTTCGCTGTTACACCTGTAGCTCTTCTCTATTCTCTACACTCCAAATC AAAATAAGTTCGCCCCTCTTTCTTTGTCCAATTCATTACCATAACGTGTCCTCTTATGTGATACTTAAATAACAGCATTA TTGTGTTAAGCAATTGTCCACTATGAAGGCATTTTAGTCGAATTCAAAAATATATTTTGCGTAAGCCCATGATTGTCTTG ATTATACGATCATTTAATCAAGAAATAAAATCCAATCCTAATTTGCTTGTCCAAAGTTTCTCTTGAGCACTATTACATTT GTTAAGATAGAAGGGAGTGGTACCGTTAGAGCCGTTAGTTCATTAGGCTATATCAATTAGGAACAGTTAGAGAGGATATC AGTTAGATAAATCGAGGGAATAAGAAGGGATGGGTTAATTCTGAGAATTAGACAGTTGATGAGAATGGGATAACCCTCTG TGAAGGGAACCCCCTTGTAGGAGAATTCTCAAAATTTCACTCACTCTAAGATTATGAGTTTGTGACAACAAGACTATGCT CCGCTAGAAGCTAGTACAAGTTAAAGACACTGAAGATCGATTACCTTGCCAATGACAAGTTGTGTTACAAGATAGTGATG CACTTATTTGGTCCTTTGGGACTCATAAATCAAGCCAGGGCACTGCATAATGTGGCAAGAGGCTAATCTATAATCCTTTA TCAATCTATTGAATTTGATTTCTTTCATGGTAGTCATAAATGACTTTGAAAAATCACACAATTGGAAAGGCATACACTTC ATGGTTACAAATTCATAAAGTGAATGAAATAATTAGTGTCTTGACCACATGAGTATGCTGTTAGATTCTACATCCTACAT GTAGTTCAGTGCTTGTGATACTAGAGTGTCTACCATCACATAGCCTGCCTTCTACATGTGCCTTTCATTCGTCTGAAAAA AAACAATAAGATTTTCTAGTGAATGGAGCCCCATTTTATGTCAGTTAAAACGTGGTGTCTATTAATTTATTTGAGGGAAG TTCCCTAGTTGTAAAGAGATTTTTCATTTCTCTTCTTTTTTCTACTTATGAAACCAATACAAGATAATCTCAGTTAAATT GAACTGCATTTTTCATTTTCTCAATACAAACACTACTTCAGAGATGCATCACACTTGTTCCATTTGCAGGTTGATGTTGA TGGATATGAGATAAAGCCTGTTGCTCTGGGTCAATCTAATAATTTGAATGTTGGCCAGAGCTGCTTTGCCATTGGGAATC CTTATGGATATGAGAACACTCTTACAACAGGGGTAATTTCTTTAATAATTTGAATCAAACTTGGTAGATTCTAACGAAAG ACCCTGAATCTGCTATCTATGAACTCTATCTGGTCATGCAAAACAGTTGTAGACCAAGGATGAAAACTTGTGTATGAAAA TAAAAAATGGTGTGATCTCGGTGTATTGTCTGATGTAAATTATGCAGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCA CCAAATGGAGGGGCCATTAGAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGTTACCCTTATGAAGTTGGGTTAAA AAAAATTGTCATTCTTCTCTTCTCTAATCATTTTTCATTATTGTCCAATTTAAATTATAGAGAGGAGAGAAATTGATTTG ACATTTCCCAGCAAGAATTATCCATGTTATGTTGGATTTCAGTACTTTCCATAATTGTATTCTCATATGAGTAGGTGTAT GAACAGGAAATTCAGGTGGACCGCTTATTGACTCTCGTGGCCATGTTATTGGAGTAAACACATCTACCTTCACTAGGAAA GGTAACAAGATGCCTCCTCATCTATTTTTATCCGATTAGAGAGGGAATAAGAGACTAATGCTTTTAATCCCAACCTGTAC CTTCTCTTAGAATGTTAGTATTACATCCATGTTTCTTGCACCCTACTTCTACACCCCAAGAAACTCGATTATTCCTTTTA CCACATTATCAAACAAAACATGATACCTTGATTAACTTTGAAGAATTTTTTTGTTGTTGCTTTTTTATGCATTTCAGGGA CTGGAGTGTCATCGGGTGTTAACTTTGCGATTCCCATCGACACAGTCATCAGAAATGTGCCATACCTTATTGTTTATGGA ACACCTTATAGTAATAGGTTTTGACTATGCGTGTTTTATAAGCTTCAGCTTTTTGTGTAAAACTGAAAATGAAAACCTCG GATTTTAATTTTACAGTCAAGTTAAGTTGTACATGAAAGAACATGTCTATTCCAAAGCTGAAAATTTGTATATGAAATAC CATGTCTGCTCAAATATGCTGTAAGCTGAAGGTAAGTTGTACATGAAAAAACATGTCTATACCAAAGGGAATAGTTATAA CATGAGACAGAAGATGTTTTGATGAATGGATGAAATACGTGTATTCACTATTCATGTCTCATGATGATTCAACGTTATAT TGAATAGAC
CDS sequence (LotjaGi6g1v0311000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGTTTTCTATTTCTCTCCACAGTAAGCACTTTCCGTCGCCAATGCTAACCACTCCCTCTTCAACAAAGTGCCT TCCCTCTGCCACTGCCGCTATTACTAGCAGACGAGCTATGGTCTTTGGTTCTGGTCTTGTAATAGCCTCCTGGTTCAATT TGGCCAATCTCAATTCACCACCACTTGCACTTGCAGAGTTGCTACAGGATGAGCTTCAGCAAGAAGAAGATAACCTTGTG CAACTGTTTCAGGAAACTTCACCGTCGGTTGTTTTCATTAAAGATCTTGAGTTGACTAAAGTCCCAAAGACTTCTTCTGA TGAAGTCATGCTGAATGAGGATGAAGATGCAAAAGTGGAAGGCACTGGTTCAGGCTTCATTTGGGATAAATTTGGTCATA TAGTCACCAATTACCATGTTGTTGCTAAACTGGCTACTGATACAAGTGGTTTACAACGTTGTAAGGTGTTCCTAGTTGAT ACCAAAGGAAATAGCTTTTACAGGGAAGGGAAAATAATTGGGTTTGATCCAGCATATGATCTAGCTGTCCTCAAGGTTGA TGTTGATGGATATGAGATAAAGCCTGTTGCTCTGGGTCAATCTAATAATTTGAATGTTGGCCAGAGCTGCTTTGCCATTG GGAATCCTTATGGATATGAGAACACTCTTACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCACCAAATGGA GGGGCCATTAGAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGTGGACCGCTTATTGACTCTCGTGG CCATGTTATTGGAGTAAACACATCTACCTTCACTAGGAAAGGGACTGGAGTGTCATCGGGTGTTAACTTTGCGATTCCCA TCGACACAGTCATCAGAAATGTGCCATACCTTATTGTTTATGGAACACCTTATAGTAATAGGTTTTGA
Protein sequence (LotjaGi6g1v0311000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMFSISLHSKHFPSPMLTTPSSTKCLPSATAAITSRRAMVFGSGLVIASWFNLANLNSPPLALAELLQDELQQEEDNLV QLFQETSPSVVFIKDLELTKVPKTSSDEVMLNEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVD TKGNSFYREGKIIGFDPAYDLAVLKVDVDGYEIKPVALGQSNNLNVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNG GAIRGAIQTDAAINAGNSGGPLIDSRGHVIGVNTSTFTRKGTGVSSGVNFAIPIDTVIRNVPYLIVYGTPYSNRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 54 | 308 | 255 | 8.2E-83 | – | |
| Coils | 65 | 85 | 21 | - | – | |
| Gene3D | 70 | 196 | 127 | 9.9E-42 | ||
| SUPERFAMILY | 79 | 306 | 228 | 1.98E-50 | ||
| Pfam | 123 | 272 | 150 | 4.2E-32 | – | |
| PRINTS | 132 | 144 | 13 | 6.4E-28 | ||
| Gene3D | 197 | 309 | 113 | 3.1E-38 | ||
| PRINTS | 206 | 230 | 25 | 6.4E-28 | ||
| PRINTS | 243 | 260 | 18 | 6.4E-28 | ||
| PRINTS | 265 | 282 | 18 | 6.4E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi6g1v0311000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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