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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317900 |
| Transcript ID | LotjaGi6g1v0317900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein; TAIR: AT1G29800.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|A0A151S6H7|A0A151S6H7_CAJCA SH3 domain-containing protein PJ696.02 family; Found in the gene: LotjaGi6g1v0317900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63538994..63543875) extracted from Lotus japonicus Gifu genome v1.2.
GAGGATTTAGGAGAGGAAAGTTGAAGATTAAGGTTGTGCACGCAAGGGTAAACGTACCGAGAAACTCATCACTGAGAACA CGCCATTGAAGAAGCCCTAATTCGAATTTCATCGCACACCCTTTTCATCTCCATCATCCAAGTTTCGTTCTTTTCGCCCA GAATTGAAATTTCCAGTGACTAATTTTATTTTTGGCTGATAATATATGTAAATATTATCATATTCAATTACACATACATG CCCTATTTTGGTGTTTGATTTAGGGATATCAATGGAGGGCACAAATTTGGACTCTCAGAATCAGGTACAAGTTGTAGAAA ATTTATCTGCAAGGGTTTCTAGTTGCTCCCTTGGCAACCAGATATCCAATTCCAATTCCAATTCTTCTCTGGTAAATTTT CTCCTCTTTCCCTTACTATATATGTGTCTGTTTTGGTTTTTGTGTTATTTGTGGATGTTGACCCTTTTTTTGGGTGATTT TGTGTGTTGATGATTCACTTAAAAATGAAACTGTAAGGGGAAGAAAATTCAGGAAGCTATTCATGGCTAATTTGTGAACA TGTAATATAATATATAATATATTACTTTAAGTCTTAAATAATAATCATTTTCCCTTTTTGAGACTTGGTTTTAGGTGCTC TATAGTTTATTAAATACTTTGTGTGATTGATTTGTTGTGCTTTGATATAATTGGCAGGATGATGAGGTTGTTAATAGGAA GAATCATGTTACTAATGAGCATGATGATTCGTATTCCACTGATAGCGTTGAAGGGCGTAGTATGACACCGTCCAGATTAT ATCCTGAAAGACCGTTGGAAAATAATAAAGATGACATGGAGTCTTTAGCTGATACTCAGAAGCAGGGGAAATACTTCTAT TATGATGCTCCGCTGTATGAAGATACTGGGTCTTGGATACCGGTTTCAGTTCCACCTATGTTGGAAGATGATCACAAAGA GTGGGCCAAAGGTTTTCACACGAACGGCGGCTATTTTCCTGATGATGATATGGGATGGAGTCAATATGTTGGAGGAGAAA AGGAGTTGACTATGTGGGATGTGTTAGTGGAAATGTTACTTGTAGCTAGGGGAAAAGTGAATTCTTTGGCATCAGGAGAT ATTCATTCTTGTGCCATTTCATGGTTATCCAGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACTGA GGCCAACTTTGGTAATTTGAGGGAACTACTAGAAGCAGAGCCTCCAAAGTGGTTGGCGGATAGTGCTGCTGCTTCTTGTA TGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCCCGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAA TGCTCCAAAGGACGCAGCTTGTTGCCGTCAAAGTTCCGAGTTTCTGACCCCCAAAGAGTCTGTGATGTATGCTTTGTCCG ACTTGAGTCTGTGCAGCCTTATTTGATGAATGAGGTAAGTAATGCTGCTCAATTGCCAACTCACGACCTGACAGACCTCA GCACTTTGAGATCATGGGTTAATTTTCCTTGGGGACAGACCATGGAATATGAAATTTACAAAGCAGCTAACACTATCAAG GCTTATAACCGGGTATGTGTACAAATTTATTATTTTTCAAGCCTAAATTTCCTTCTGAAGCTGAAACTATCTGTGATTCA TGCTAATTATTGTGGGGTTTACATCTTTAGTGGAATATATTCCGATGCTTACCTGAACTAGAAATCAATTAAAAGTGTCT GTATGTATATCATGTGATGTTGACATCATCTTGTAATTTTTAAGGTTCTTGATGGTATTGTTTATGTCAACATGTCATGG TTGTGTAGGTCTACTATGTATTTTATTTCTGAAAATGTGTTTTACTTAATGAGGAATTTCAACTTTTTCAGGTTGGTTAT TTAAAGCCTGAGAAGTCAATTCCAGATGTCATTCTAAGGCATGCAAAAGGCCTCGCAATTATCACTGTGGTCAAAGTAGG AGTGATGGTTACTTATAATATTGGAACAGGACTTGTCGTTGCACGTAGAGAAGATGGTTCATGGTCTCCGCCATCTGCCA TTTCCACATGTGGTGCGGGATGGGGGGCTCAGGTGAAATAACAAATCTGTAACAATACTGACTGAACACTCTAAATAATG ATGTGGTTGTCCATATGGATTGAAAGCCAAGACTCTCACTATATGCTGCACATTCTGTTTCCAGCCTGCTCTAATACCAG AAGATTTTATTTTGTTGAACTCTAGCAAAAAAAAAATTCCTAGTAACTTCTGATCAAATATGCTGATAATTTTTTACAAT TTCATCTTGTTTAAGAAAATGGTTTCTGATTTCATTTTCATCTTTCACTAATAGTTACTAAAGTATTGTCATATTTTCAA TTTCTTTATTTTCAAGTACTGAACGGGAAAACATACTAAAACTCAGTGCTAAAACTTTCAGGCCTGAAGTTTTTATATGA ATCTTCATTTAATATTATTCTATTTACTCCTCAACTGTGCAAAGCACTGATTCCAACTTCCTACTTCTCATATGCAGCTG TCTCAAGGTTTTACTGATTCCTATTTATTCCATTCATGTCTTCTTAAGTGTTTAACTTATTTTTTCCACCTCACAGGCTG GAGGAGAGTTAACTGACTTCATTATTGTTCTGAGAACAACTGAAGCTGTCAAGACATTTAGTGGTAATGTACATCTTTCA CTTGGTGCTGGTCTGAGTGCTGCAGTTGGCATTGCGGGAAGGGCACTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTA TGCTGCTTGTTATACATACAGCTGCAGTAAAGGTATACTTATTTGGGATCATTTTGTGTACTGACCCCCTACTTATTTTT GGTCATTATGCAACTTGACCTTTTCTCTGCTCAATGGGAATATTTCTTAGCCTGGTAGTGCAATATACACTCTAGTCTCT ATGTATAGGATCATTTGATTGCTTTGGTTTCATGAACCAATTAATGCAAACTTGAACTGGAGTACTGCAAAATATTGCTT TGCAGTTCATGAAAATTCTAGCTATGGAAAATGCTGTGTTTTTGTTTTGGGGGGGGGGGGGGGGTGACTGTGATATTTAA TTATTTATGTTCACTTGAGGGTAGCATTTGACCATTATATTGCTTGCAGGTGCATTTGTTGGATGTTCACTTGAAGGAAG TATTGTCATCACTCGCACTCAAGAAAATTCTCGTTTTTATGGCAGCCAGTCTATCACTTCAACAGATATACTTCTTGGCT CGCTGCCTAGGCCTCCTGCTGCCGCCATTCTCTACCGTTCTCTTGCAGATTTGTATGGGAAGCTTGATGGTTAATTGAAT GGTTCAATGTCACACTTCATTCCTTTTTCATTTTGAACATTGGCATTGAAGAAAATTTGTACAGATGCTAAGTCCCACTC AAATTGTAAAGGTTCTCTTCGTGTCATTATTTGTCATGTAAATAAATGCAGATGTAAATATTGTGTACTCTGCGTTGACC AAGATGGAGGATTGGTGACTTGTTTTAAGGTTAATTTTATATAAAGTACTATAAGTTTAATCTCTGTGCATGTACAAGAA ATTCCCAACAGGAAGTTAAAATGCTTCTCTGGTCATCAAGAAGTCAAGTTGATTAGTTCTGAACCATACGAGTGCAATTA ACATATAAATGATCCTTTCTTGTATTTCAGCTTAAAAATAATTTCTAGTCCAACCAAACGAACATGATTTTGATGGATTG CATAATAGACAATCTGCTGCAAATAGCTTTTCATTTTGATTTTTTACAAATCTGTATGGTAAAGCCATGTCCATCAATGT TTATTTTTTACCACTAATCACAAGAAAGGCGTACCATATAAAAAGGTATACTCTTATTCATTGATGTCCATGTCCTATGA TATAAAAAATGTTTAAATGTAGCCAAAAGAAAATTTCAAAACTCCCAGAGCCTATTTCTCTGACCTATTTTGATCAAATT GAGGAAGAAACGTGGTGTGATCTTCTTAAGTCTCCCAAGTATGCTCTTCACAGATTGATTAAGGGCAACATATAAAGGGA ACTGCATCATAGCAAATATACTGACAGGGAAGAACGCTGCGCAATATGTCAGGATTGAAGTCCATCTGTCATTCTCTAAC TTGATGTTGATCAGAATTGTTGCACTGAATGATAGCATGGTTGTGGCCATGGAGAAGAAGAGAAAGGCAAAACCTGCCAT TAGTTTCCGCGGGAGAGACTTCCGAAAATCCCGCATCTCACAGGGTGATGTCAGGATTGAGAGGAACATGACCACTGAAG CAAATGAACTCACCAGGGCTATAATATCCATGACCGTGAACACCAGAAATATAGCATGGTGGAGAAATCTAGGGAGGCCA GTAATGTCGTCTGTGCCACCAGGGACAGTGTAAGCTGCTGCAAAGACAACAGTGGCTACAAGGACAGCTACCGCAGAACA TGACTGTGCTGTTTCTTTTATCCATTCACGAGCATCCTTCAGCAGTTGTTCATGCTTCTCTTCAAAGAGTTCCCATGCTG TTTCGTTGCTCTTATTGTTGTGAATGATGTAATGGTAAGGGAGTCTTTTTTCTATGCGCTGTTTATGTATAGAATTGGAA ATCAGATAGAAACTTGGTACTAGGCATTAATTAGAGATATTCACAATATATGAATGTGTCAGCTATCAGATTCAGATTAT CTCATGTAACATGATAGCTCATATTAAACTTCATGTCTGATTGTCTATGCTAGCTCCATCAATATTTAATAGATGTAATC CTGAATATTTTTACAAAGAAAAAAATAGACACAAAATTTCAACATGACATAGTCATGTGAATTCTTAACAATAAAGATCC TA
CDS sequence (LotjaGi6g1v0317900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGCACAAATTTGGACTCTCAGAATCAGGTACAAGTTGTAGAAAATTTATCTGCAAGGGTTTCTAGTTGCTCCCT TGGCAACCAGATATCCAATTCCAATTCCAATTCTTCTCTGGATGATGAGGTTGTTAATAGGAAGAATCATGTTACTAATG AGCATGATGATTCGTATTCCACTGATAGCGTTGAAGGGCGTAGTATGACACCGTCCAGATTATATCCTGAAAGACCGTTG GAAAATAATAAAGATGACATGGAGTCTTTAGCTGATACTCAGAAGCAGGGGAAATACTTCTATTATGATGCTCCGCTGTA TGAAGATACTGGGTCTTGGATACCGGTTTCAGTTCCACCTATGTTGGAAGATGATCACAAAGAGTGGGCCAAAGGTTTTC ACACGAACGGCGGCTATTTTCCTGATGATGATATGGGATGGAGTCAATATGTTGGAGGAGAAAAGGAGTTGACTATGTGG GATGTGTTAGTGGAAATGTTACTTGTAGCTAGGGGAAAAGTGAATTCTTTGGCATCAGGAGATATTCATTCTTGTGCCAT TTCATGGTTATCCAGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACTGAGGCCAACTTTGGTAATT TGAGGGAACTACTAGAAGCAGAGCCTCCAAAGTGGTTGGCGGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGG TTTCATCCCATCATGTGCTCCCGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGCTCCAAAGGACGCAG CTTGTTGCCGTCAAAGTTCCGAGTTTCTGACCCCCAAAGAGTCTGTGATGTATGCTTTGTCCGACTTGAGTCTGTGCAGC CTTATTTGATGAATGAGGTAAGTAATGCTGCTCAATTGCCAACTCACGACCTGACAGACCTCAGCACTTTGAGATCATGG GTTAATTTTCCTTGGGGACAGACCATGGAATATGAAATTTACAAAGCAGCTAACACTATCAAGGCTTATAACCGGGTTGG TTATTTAAAGCCTGAGAAGTCAATTCCAGATGTCATTCTAAGGCATGCAAAAGGCCTCGCAATTATCACTGTGGTCAAAG TAGGAGTGATGGTTACTTATAATATTGGAACAGGACTTGTCGTTGCACGTAGAGAAGATGGTTCATGGTCTCCGCCATCT GCCATTTCCACATGTGGTGCGGGATGGGGGGCTCAGGCTGGAGGAGAGTTAACTGACTTCATTATTGTTCTGAGAACAAC TGAAGCTGTCAAGACATTTAGTGGTAATGTACATCTTTCACTTGGTGCTGGTCTGAGTGCTGCAGTTGGCATTGCGGGAA GGGCACTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTT GTTGGATGTTCACTTGAAGGAAGTATTGTCATCACTCGCACTCAAGAAAATTCTCGTTTTTATGGCAGCCAGTCTATCAC TTCAACAGATATACTTCTTGGCTCGCTGCCTAGGCCTCCTGCTGCCGCCATTCTCTACCGTTCTCTTGCAGATTTGTATG GGAAGCTTGATGGTTAA
Protein sequence (LotjaGi6g1v0317900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGTNLDSQNQVQVVENLSARVSSCSLGNQISNSNSNSSLDDEVVNRKNHVTNEHDDSYSTDSVEGRSMTPSRLYPERPL ENNKDDMESLADTQKQGKYFYYDAPLYEDTGSWIPVSVPPMLEDDHKEWAKGFHTNGGYFPDDDMGWSQYVGGEKELTMW DVLVEMLLVARGKVNSLASGDIHSCAISWLSSHVLEQAWREMAQTLTEANFGNLRELLEAEPPKWLADSAAASCMLCGVR FHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCFVRLESVQPYLMNEVSNAAQLPTHDLTDLSTLRSW VNFPWGQTMEYEIYKAANTIKAYNRVGYLKPEKSIPDVILRHAKGLAIITVVKVGVMVTYNIGTGLVVARREDGSWSPPS AISTCGAGWGAQAGGELTDFIIVLRTTEAVKTFSGNVHLSLGAGLSAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAF VGCSLEGSIVITRTQENSRFYGSQSITSTDILLGSLPRPPAAAILYRSLADLYGKLDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 537 | 499 | 3.9E-303 | – | |
| PANTHER | 39 | 537 | 499 | 3.9E-303 | – | |
| MobiDBLite | 50 | 88 | 39 | - | – | |
| Gene3D | 215 | 294 | 80 | 1.6E-19 | ||
| SMART | 220 | 291 | 72 | 4.3E-16 | ||
| SUPERFAMILY | 223 | 302 | 80 | 1.2E-18 | ||
| Pfam | 224 | 289 | 66 | 1.9E-16 | ||
| ProSiteProfiles | 228 | 290 | 63 | 12.544 | ||
| CDD | 331 | 532 | 202 | 2.15508E-99 | – | |
| Pfam | 406 | 530 | 125 | 7.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0317900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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