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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317900 |
| Transcript ID | LotjaGi6g1v0317900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein; TAIR: AT1G29800.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|A0A151S6H7|A0A151S6H7_CAJCA SH3 domain-containing protein PJ696.02 family; Found in the gene: LotjaGi6g1v0317900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63539584..63542347) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTAAATAATAATCATTTTCCCTTTTTGAGACTTGGTTTTAGGTGCTCTATAGTTTATTAAATACTTTGTGTGATTGA TTTGTTGTGCTTTGATATAATTGGCAGGATGATGAGGTTGTTAATAGGAAGAATCATGTTACTAATGAGCATGATGATTC GTATTCCACTGATAGCGTTGAAGGGCGTAGTATGACACCGTCCAGATTATATCCTGAAAGACCGTTGGAAAATAATAAAG ATGACATGGAGTCTTTAGCTGATACTCAGAAGCAGGGGAAATACTTCTATTATGATGCTCCGCTGTATGAAGATACTGGG TCTTGGATACCGGTTTCAGTTCCACCTATGTTGGAAGATGATCACAAAGAGTGGGCCAAAGGTTTTCACACGAACGGCGG CTATTTTCCTGATGATGATATGGGATGGAGTCAATATGTTGGAGGAGAAAAGGAGTTGACTATGTGGGATGTGTTAGTGG AAATGTTACTTGTAGCTAGGGGAAAAGTGAATTCTTTGGCATCAGGAGATATTCATTCTTGTGCCATTTCATGGTTATCC AGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACTGAGGCCAACTTTGGTAATTTGAGGGAACTACT AGAAGCAGAGCCTCCAAAGTGGTTGGCGGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCA TGTGCTCCCGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGCTCCAAAGGACGCAGCTTGTTGCCGTCA AAGTTCCGAGTTTCTGACCCCCAAAGAGTCTGTGATGTATGCTTTGTCCGACTTGAGTCTGTGCAGCCTTATTTGATGAA TGAGGTAAGTAATGCTGCTCAATTGCCAACTCACGACCTGACAGACCTCAGCACTTTGAGATCATGGGTTAATTTTCCTT GGGGACAGACCATGGAATATGAAATTTACAAAGCAGCTAACACTATCAAGGCTTATAACCGGGTATGTGTACAAATTTAT TATTTTTCAAGCCTAAATTTCCTTCTGAAGCTGAAACTATCTGTGATTCATGCTAATTATTGTGGGGTTTACATCTTTAG TGGAATATATTCCGATGCTTACCTGAACTAGAAATCAATTAAAAGTGTCTGTATGTATATCATGTGATGTTGACATCATC TTGTAATTTTTAAGGTTCTTGATGGTATTGTTTATGTCAACATGTCATGGTTGTGTAGGTCTACTATGTATTTTATTTCT GAAAATGTGTTTTACTTAATGAGGAATTTCAACTTTTTCAGGTTGGTTATTTAAAGCCTGAGAAGTCAATTCCAGATGTC ATTCTAAGGCATGCAAAAGGCCTCGCAATTATCACTGTGGTCAAAGTAGGAGTGATGGTTACTTATAATATTGGAACAGG ACTTGTCGTTGCACGTAGAGAAGATGGTTCATGGTCTCCGCCATCTGCCATTTCCACATGTGGTGCGGGATGGGGGGCTC AGGTGAAATAACAAATCTGTAACAATACTGACTGAACACTCTAAATAATGATGTGGTTGTCCATATGGATTGAAAGCCAA GACTCTCACTATATGCTGCACATTCTGTTTCCAGCCTGCTCTAATACCAGAAGATTTTATTTTGTTGAACTCTAGCAAAA AAAAAATTCCTAGTAACTTCTGATCAAATATGCTGATAATTTTTTACAATTTCATCTTGTTTAAGAAAATGGTTTCTGAT TTCATTTTCATCTTTCACTAATAGTTACTAAAGTATTGTCATATTTTCAATTTCTTTATTTTCAAGTACTGAACGGGAAA ACATACTAAAACTCAGTGCTAAAACTTTCAGGCCTGAAGTTTTTATATGAATCTTCATTTAATATTATTCTATTTACTCC TCAACTGTGCAAAGCACTGATTCCAACTTCCTACTTCTCATATGCAGCTGTCTCAAGGTTTTACTGATTCCTATTTATTC CATTCATGTCTTCTTAAGTGTTTAACTTATTTTTTCCACCTCACAGGCTGGAGGAGAGTTAACTGACTTCATTATTGTTC TGAGAACAACTGAAGCTGTCAAGACATTTAGTGGTAATGTACATCTTTCACTTGGTGCTGGTCTGAGTGCTGCAGTTGGC ATTGCGGGAAGGGCACTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTATGCTGCTTGTTATACATACAGCTGCAGTAA AGGTATACTTATTTGGGATCATTTTGTGTACTGACCCCCTACTTATTTTTGGTCATTATGCAACTTGACCTTTTCTCTGC TCAATGGGAATATTTCTTAGCCTGGTAGTGCAATATACACTCTAGTCTCTATGTATAGGATCATTTGATTGCTTTGGTTT CATGAACCAATTAATGCAAACTTGAACTGGAGTACTGCAAAATATTGCTTTGCAGTTCATGAAAATTCTAGCTATGGAAA ATGCTGTGTTTTTGTTTTGGGGGGGGGGGGGGGGTGACTGTGATATTTAATTATTTATGTTCACTTGAGGGTAGCATTTG ACCATTATATTGCTTGCAGGTGCATTTGTTGGATGTTCACTTGAAGGAAGTATTGTCATCACTCGCACTCAAGAAAATTC TCGTTTTTATGGCAGCCAGTCTATCACTTCAACAGATATACTTCTTGGCTCGCTGCCTAGGCCTCCTGCTGCCGCCATTC TCTACCGTTCTCTTGCAGATTTGTATGGGAAGCTTGATGGTTAA
CDS sequence (LotjaGi6g1v0317900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACCGTCCAGATTATATCCTGAAAGACCGTTGGAAAATAATAAAGATGACATGGAGTCTTTAGCTGATACTCAGAA GCAGGGGAAATACTTCTATTATGATGCTCCGCTGTATGAAGATACTGGGTCTTGGATACCGGTTTCAGTTCCACCTATGT TGGAAGATGATCACAAAGAGTGGGCCAAAGGTTTTCACACGAACGGCGGCTATTTTCCTGATGATGATATGGGATGGAGT CAATATGTTGGAGGAGAAAAGGAGTTGACTATGTGGGATGTGTTAGTGGAAATGTTACTTGTAGCTAGGGGAAAAGTGAA TTCTTTGGCATCAGGAGATATTCATTCTTGTGCCATTTCATGGTTATCCAGCCATGTACTTGAACAAGCTTGGAGAGAGA TGGCACAAACTCTTACTGAGGCCAACTTTGGTAATTTGAGGGAACTACTAGAAGCAGAGCCTCCAAAGTGGTTGGCGGAT AGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCCCGGCATCACTGCCGGTTTTGTGG AGGAATATTTTGTGGTGAATGCTCCAAAGGACGCAGCTTGTTGCCGTCAAAGTTCCGAGTTTCTGACCCCCAAAGAGTCT GTGATGTATGCTTTGTCCGACTTGAGTCTGTGCAGCCTTATTTGATGAATGAGGTAAGTAATGCTGCTCAATTGCCAACT CACGACCTGACAGACCTCAGCACTTTGAGATCATGGGTTAATTTTCCTTGGGGACAGACCATGGAATATGAAATTTACAA AGCAGCTAACACTATCAAGGCTTATAACCGGGTTGGTTATTTAAAGCCTGAGAAGTCAATTCCAGATGTCATTCTAAGGC ATGCAAAAGGCCTCGCAATTATCACTGTGGTCAAAGTAGGAGTGATGGTTACTTATAATATTGGAACAGGACTTGTCGTT GCACGTAGAGAAGATGGTTCATGGTCTCCGCCATCTGCCATTTCCACATGTGGTGCGGGATGGGGGGCTCAGGCTGGAGG AGAGTTAACTGACTTCATTATTGTTCTGAGAACAACTGAAGCTGTCAAGACATTTAGTGGTAATGTACATCTTTCACTTG GTGCTGGTCTGAGTGCTGCAGTTGGCATTGCGGGAAGGGCACTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTATGCT GCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGAAGTATTGTCATCACTCGCACTCA AGAAAATTCTCGTTTTTATGGCAGCCAGTCTATCACTTCAACAGATATACTTCTTGGCTCGCTGCCTAGGCCTCCTGCTG CCGCCATTCTCTACCGTTCTCTTGCAGATTTGTATGGGAAGCTTGATGGTTAA
Protein sequence (LotjaGi6g1v0317900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPSRLYPERPLENNKDDMESLADTQKQGKYFYYDAPLYEDTGSWIPVSVPPMLEDDHKEWAKGFHTNGGYFPDDDMGWS QYVGGEKELTMWDVLVEMLLVARGKVNSLASGDIHSCAISWLSSHVLEQAWREMAQTLTEANFGNLRELLEAEPPKWLAD SAAASCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCFVRLESVQPYLMNEVSNAAQLPT HDLTDLSTLRSWVNFPWGQTMEYEIYKAANTIKAYNRVGYLKPEKSIPDVILRHAKGLAIITVVKVGVMVTYNIGTGLVV ARREDGSWSPPSAISTCGAGWGAQAGGELTDFIIVLRTTEAVKTFSGNVHLSLGAGLSAAVGIAGRALEADVRAGDGGYA ACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQSITSTDILLGSLPRPPAAAILYRSLADLYGKLDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 11 | 469 | 459 | 8.0E-302 | – | |
| PANTHER | 11 | 469 | 459 | 8.0E-302 | – | |
| Gene3D | 147 | 226 | 80 | 1.3E-19 | ||
| SMART | 152 | 223 | 72 | 4.3E-16 | ||
| SUPERFAMILY | 155 | 234 | 80 | 9.59E-19 | ||
| Pfam | 156 | 221 | 66 | 1.6E-16 | ||
| ProSiteProfiles | 160 | 222 | 63 | 12.544 | ||
| CDD | 263 | 464 | 202 | 2.1653E-99 | – | |
| Pfam | 338 | 462 | 125 | 6.2E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0317900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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