Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318100 |
| Transcript ID | LotjaGi6g1v0318100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat protein; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|G7ILT7|G7ILT7_MEDTR Ankyrin repeat protein; Found in the gene: LotjaGi6g1v0318100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63542727..63547018) extracted from Lotus japonicus Gifu genome v1.2.
GGTTCTTTACCAGTTAGCTAGTGAAGAGTGAAAGAAAAACAGAGAAATGGCAAGGCAAGTTATAGGATCAGTTGAAAAAA TGAGAGAGCCATATATACTGGCCAAGAGATATGATTGGAAAGGGTTTCTGGAATTTTTCCGCAAACACAAAGATCTCGTG ACTAAGCAAATTGATTTGCAACAAAGCACCCCTTTTCACTATGCAGCTCACTGTGGCAGCACAGAAATGTATGAGGAAAT GCTTGGAATGGTGGATATGTCAGATGTGCAACATGTGTTGAGGATGCAGGATGCGATGGGGAACACGCCGCTTCACGAGG TGGCGTTCACCGGAGAAGTGGGAATGACAAGGTGCATACTTAGGTACGAGGGTCAAGGGTCGAAGGAGACAAGGAGAATA CTGGAGATGGAGGATGGTGAAGGGACAGAGCAGTTTGAGGCAGTGATGAAAATGAGAAATGAATTGGGAGAGACTCCAGT GTACAGAGCAGCTGCTCTTGGGAAAACAGATTTGTTGGAGTACTTGGTTCATGAAGAAGGCATAGACTTGAGGATCCATT TTCATAGAGAAGTTGATCAGATGTCCATTCTTCACACTACTGTCATAGACCAATTTTTTGGTTTCACTCTCTTCTTAATC TCCATACTCTGTTCTTGCAATTCCTCTGCAGGCACACACACATGCATGCACACAATATAGTGCTTTTTCTAGATAGTTAG TATTACTCGGACATACGGTTTTGAGCAGAATTCAGTTAACACTTGCTAAGTGGCGGATTTTAATCGTCGCTAATCTTTGC GGAGGTTAAAATCTGATGTTAAAAGGATGTTAATTGAATATACACTCAAAACCATATGTTGATGTTGATTTCATTTTACT ATTTTTAAATTTTAATTTGGTTTTTATCCATAAAAATAAAGTATTTTAAATTATCTTTCTCAATTTTAGATCAAGAAAAA TCTGGTATTAAAATGTGATAGAAGAAAAAATGAGTATTGATGTATCAAAACCTTAAAATTAAAGAGGAGTTTAATTCAAA ATACCATTAAGCATTTATCCATTCTTGATTGGTTATTTTTGTTTGGTGATACTCTCATACAAAACCATTCATGCTGAATA GCATTACTATTTTGGAAAATTTTGCCCAAGTTAACATTGTTCCTTGATCTTTTCGTTATTCTGTTGTCTTTGGTGAAGAA AAAGAAATTAGCTAGCTGATTGTTTTCAATGCAGGCACAGCATTATGGTTATTGAAAAGGTATGGTGAGCTCGCTTATTT AAAGGAAGACCATGAATTGACAACTCTACAATTGCTAGCTAAAATGCCATCAGCATTTAAGAGTCAAACTCAAATGGGGA TCTTCAAAAAGTTCATATATATTTGTAAATCTCTGCTAACTTTATCTTTGATTAGTGGGCTTTGTAATCCATACACAATA TTTGAACTTAAAACATGCATTCATGTACCACTCGAACCAATCAGACATTTGATAAATTAAGGGAATGCTCTGATAGATTA TATAGCAAATTTAGCTTATAGTTATAATATCGTGTTGCAGTGGTTCCTGATTATCAAGATGAAAGATACTTTATTCAAAA TTGTAAGCATGGTACTAAAAAGGGAAAAGATTTGGAAAGCGGCCAAAAGGATATAGTTGAACCGTATCAATATCCAATGA AGCTTGAACCACTTCAATCTCAGAGGAAACTCTCAGGTTTGTGTTAAATAGGTTAAAATACATACTAAACACACAATTTA TGTATTAGTTGGCACTTGGGCACTTGGCACTCGAGAGTTCACCTTGAAGAAGTGTATAAAATAACGGAGGGGATCTTCTA ATCAACTAATGTAAAATTTCACATAATAAGCTAACCAAATTCTAAAATTAGTTCAAAATTTCAAATGGTTCATGTTTGAT GAAAGCGTGAAAAGTAAAACTTGTGCATAGTAATTAAACTCTATTCAAACAGTTAACTTATTTGATATATGTGTGCAAAG GCATCTAACCATATAAAAATGTGAATCAAAATTGCAGCCTTTTCATGGATGTGGTACACTATGTGGAAGCTTATCGCAAA AGGTGCAACCATGTGTTCATGATAAATTTCTCCATTCCAGTTAGACTATTTCTGTTTTTGAATTCTGAAATTATTCTTTC TACTAATGTTACTTGTGTATTATTATTGTTATGTTCTTGGTCAGAATGGAAGGAGGTTGCGAAAGTTTGGAGAAAAAAGG AAATGCACAACCTGGTACAAGAACTTGTACAGCTATTAGTAAAGACAGACCATTCATGGCAACATAGTTATGTGGCAAAG GACAGAACAGTTTCAATGGGGAGATCACATCATCAATCCAAGAAATACGAAGGGAAGAAACGAAAGAGACAAGAAAAACA AGAGGAGCAACAAAAGGAACAAGAGGCTGCAACAACCAAACCCATTATTTATACCCCTTTGTTGATGGCTGCTTGCAATG GAATTGTAGAGATTGTTGAGGAAATAATTCGCTTGAATCCTCAATCAATCGAGCATGTCAGTGAAGATGAGCAGAACATC TTGTACATGGCAGTTAAACACCGTCAGCTAGAGATTTTCAGATTGTTGAAGAAATTGAAAATGGTGAGACGTCTTGCTGG CAAAATAGACAAGGAAAGTAACACTGTGCTTCACTACACTGCAGAGTTTATAGGGGGGAGCCAACCTGGTTATGCTCTGC AATTGCAAGAGGAATTGCATTGGTTTGAAGTAAGCAATTAACTTTTTTATCATCTCAAAATCAGAAATGACATTTACACA TAATCTCCTCTTGCTTCCCAATTCAATGCATCATGTGTTCATTCAAAATTTTAAGCATATAGCAAACACATGTTGGCTCG GTAGTAAGGATGAATCACTTCCTCTCAGAAGGTTGTGTGTTTGATTCTCACTGCTGATATAAAGGTTGTTTTGGTGGGTT ATCTCTAAGTACCTCTGTAAGCAAGTTATGGTTCTAGAGTCATGCTCTGACCTGTGGTGGTGACCAGAACTAAAGCCACT CAAACTCTTGTTAACAAAAAAGAAAAATTAAGCATATATGATCATAACAAAGATAAAGATAAATGGAGGTGAAAGTTAAA TGAAATTAACATAGCTAGGGGATTAGGATCTTTATTGTTAAGAATTCACATGACTATGTCATGTTGAAATTTTGTGTCTA TTTTTTTCTTTGTAAAAATATTCAGGATTACATCTATTAAATATTGATGGAGCTAGCATAGACAATCAGACATGAAGTTT AATATGAGCTATCATGTTACATGAGATAATCTGAATCTGATAGCTGACACATTCATATATTGTGAATATCTCTAATTAAT GCCTAGTACCAAGTTTCTATCTGATTTCCAATTCTATACATAAACAGCGCATAGAAAAAAGACTCCCTTACCATTACATC ATTCACAACAATAAGAGCAACGAAACAGCATGGGAACTCTTTGAAGAGAAGCATGAACAACTGCTGAAGGATGCTCGTGA ATGGATAAAAGAAACAGCACAGTCATGTTCTGCGGTAGCTGTCCTTGTAGCCACTGTTGTCTTTGCAGCAGCTTACACTG TCCCTGGTGGCACAGACGACATTACTGGCCTCCCTAGATTTCTCCACCATGCTATATTTCTGGTGTTCACGGTCATGGAT ATTATAGCCCTGGTGAGTTCATTTGCTTCAGTGGTCATGTTCCTCTCAATCCTGACATCACCCTGTGAGATGCGGGATTT TCGGAAGTCTCTCCCGCGGAAACTAATGGCAGGTTTTGCCTTTCTCTTCTTCTCCATGGCCACAACCATGCTATCATTCA GTGCAACAATTCTGATCAACATCAAGTTAGAGAATGACAGATGGACTTCAATCCTGACATATTGCGCAGCGTTCTTCCCT GTCAGTATATTTGCTATGATGCAGTTCCCTTTATATGTTGCCCTTAATCAATCTGTGAAGAGCATACTTGGGAGACTTAA GAAGATCACACCACGTTTCTTCCTCAATTTGATCAAAATAGGTCAGAGAAATAGGCTCTGGGAGTTTTGAAATTTTCTTT TGGCTACATTTAAACATTTTTTATATCATAGGACATGGACATCAATGAATAAGAGTATACCTTTTTATATGGTACGCCTT TCTTGTGATTAGTGGTAAAAAATAAACATTGATGGACATGGCTTTACCATACAGATTTGTAAAAAATCAAAATGAAAAGC TATTTGCAGCAGATTGTCTATTATGCAATCCATCAAAATCATGTTCGTTTGG
CDS sequence (LotjaGi6g1v0318100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGCAAGTTATAGGATCAGTTGAAAAAATGAGAGAGCCATATATACTGGCCAAGAGATATGATTGGAAAGGGTT TCTGGAATTTTTCCGCAAACACAAAGATCTCGTGACTAAGCAAATTGATTTGCAACAAAGCACCCCTTTTCACTATGCAG CTCACTGTGGCAGCACAGAAATGTATGAGGAAATGCTTGGAATGGTGGATATGTCAGATGTGCAACATGTGTTGAGGATG CAGGATGCGATGGGGAACACGCCGCTTCACGAGGTGGCGTTCACCGGAGAAGTGGGAATGACAAGGTGCATACTTAGGTA CGAGGGTCAAGGGTCGAAGGAGACAAGGAGAATACTGGAGATGGAGGATGGTGAAGGGACAGAGCAGTTTGAGGCAGTGA TGAAAATGAGAAATGAATTGGGAGAGACTCCAGTGTACAGAGCAGCTGCTCTTGGGAAAACAGATTTGTTGGAGTACTTG GTTCATGAAGAAGGCATAGACTTGAGGATCCATTTTCATAGAGAAGTTGATCAGATGTCCATTCTTCACACTACTGTCAT AGACCAATTTTTTGGCACAGCATTATGGTTATTGAAAAGGTATGGTGAGCTCGCTTATTTAAAGGAAGACCATGAATTGA CAACTCTACAATTGCTAGCTAAAATGCCATCAGCATTTAAGAGTCAAACTCAAATGGGGATCTTCAAAAAGTTCATATAT ATTTTGGTTCCTGATTATCAAGATGAAAGATACTTTATTCAAAATTGTAAGCATGGTACTAAAAAGGGAAAAGATTTGGA AAGCGGCCAAAAGGATATAGTTGAACCGTATCAATATCCAATGAAGCTTGAACCACTTCAATCTCAGAGGAAACTCTCAG CCTTTTCATGGATGTGGTACACTATGTGGAAGCTTATCGCAAAAGAATGGAAGGAGGTTGCGAAAGTTTGGAGAAAAAAG GAAATGCACAACCTGGTACAAGAACTTGTACAGCTATTAGTAAAGACAGACCATTCATGGCAACATAGTTATGTGGCAAA GGACAGAACAGTTTCAATGGGGAGATCACATCATCAATCCAAGAAATACGAAGGGAAGAAACGAAAGAGACAAGAAAAAC AAGAGGAGCAACAAAAGGAACAAGAGGCTGCAACAACCAAACCCATTATTTATACCCCTTTGTTGATGGCTGCTTGCAAT GGAATTGTAGAGATTGTTGAGGAAATAATTCGCTTGAATCCTCAATCAATCGAGCATGTCAGTGAAGATGAGCAGAACAT CTTGTACATGGCAGTTAAACACCGTCAGCTAGAGATTTTCAGATTGTTGAAGAAATTGAAAATGGTGAGACGTCTTGCTG GCAAAATAGACAAGGAAAGTAACACTGTGCTTCACTACACTGCAGAGTTTATAGGGGGGAGCCAACCTGGTTATGCTCTG CAATTGCAAGAGGAATTGCATTGGTTTGAACGCATAGAAAAAAGACTCCCTTACCATTACATCATTCACAACAATAAGAG CAACGAAACAGCATGGGAACTCTTTGAAGAGAAGCATGAACAACTGCTGAAGGATGCTCGTGAATGGATAAAAGAAACAG CACAGTCATGTTCTGCGGTAGCTGTCCTTGTAGCCACTGTTGTCTTTGCAGCAGCTTACACTGTCCCTGGTGGCACAGAC GACATTACTGGCCTCCCTAGATTTCTCCACCATGCTATATTTCTGGTGTTCACGGTCATGGATATTATAGCCCTGGTGAG TTCATTTGCTTCAGTGGTCATGTTCCTCTCAATCCTGACATCACCCTGTGAGATGCGGGATTTTCGGAAGTCTCTCCCGC GGAAACTAATGGCAGGTTTTGCCTTTCTCTTCTTCTCCATGGCCACAACCATGCTATCATTCAGTGCAACAATTCTGATC AACATCAAGTTAGAGAATGACAGATGGACTTCAATCCTGACATATTGCGCAGCGTTCTTCCCTGTCAGTATATTTGCTAT GATGCAGTTCCCTTTATATGTTGCCCTTAATCAATCTGTGAAGAGCATACTTGGGAGACTTAAGAAGATCACACCACGTT TCTTCCTCAATTTGATCAAAATAGGTCAGAGAAATAGGCTCTGGGAGTTTTGA
Protein sequence (LotjaGi6g1v0318100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARQVIGSVEKMREPYILAKRYDWKGFLEFFRKHKDLVTKQIDLQQSTPFHYAAHCGSTEMYEEMLGMVDMSDVQHVLRM QDAMGNTPLHEVAFTGEVGMTRCILRYEGQGSKETRRILEMEDGEGTEQFEAVMKMRNELGETPVYRAAALGKTDLLEYL VHEEGIDLRIHFHREVDQMSILHTTVIDQFFGTALWLLKRYGELAYLKEDHELTTLQLLAKMPSAFKSQTQMGIFKKFIY ILVPDYQDERYFIQNCKHGTKKGKDLESGQKDIVEPYQYPMKLEPLQSQRKLSAFSWMWYTMWKLIAKEWKEVAKVWRKK EMHNLVQELVQLLVKTDHSWQHSYVAKDRTVSMGRSHHQSKKYEGKKRKRQEKQEEQQKEQEAATTKPIIYTPLLMAACN GIVEIVEEIIRLNPQSIEHVSEDEQNILYMAVKHRQLEIFRLLKKLKMVRRLAGKIDKESNTVLHYTAEFIGGSQPGYAL QLQEELHWFERIEKRLPYHYIIHNNKSNETAWELFEEKHEQLLKDAREWIKETAQSCSAVAVLVATVVFAAAYTVPGGTD DITGLPRFLHHAIFLVFTVMDIIALVSSFASVVMFLSILTSPCEMRDFRKSLPRKLMAGFAFLFFSMATTMLSFSATILI NIKLENDRWTSILTYCAAFFPVSIFAMMQFPLYVALNQSVKSILGRLKKITPRFFLNLIKIGQRNRLWEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 536 | 536 | - | – | |
| PANTHER | 12 | 705 | 694 | 4.2E-158 | – | |
| PANTHER | 12 | 705 | 694 | 4.2E-158 | – | |
| SUPERFAMILY | 19 | 220 | 202 | 1.51E-14 | ||
| Gene3D | 20 | 232 | 213 | 4.8E-15 | ||
| ProSiteProfiles | 45 | 106 | 62 | 8.694 | ||
| SMART | 45 | 73 | 29 | 180.0 | ||
| SMART | 84 | 115 | 32 | 200.0 | ||
| SMART | 140 | 170 | 31 | 170.0 | ||
| MobiDBLite | 350 | 384 | 35 | - | – | |
| Gene3D | 354 | 472 | 119 | 4.4E-9 | ||
| Coils | 363 | 386 | 24 | - | – | |
| MobiDBLite | 368 | 382 | 15 | - | – | |
| SMART | 389 | 419 | 31 | 190.0 | ||
| SUPERFAMILY | 391 | 468 | 78 | 1.74E-7 | ||
| SMART | 423 | 452 | 30 | 570.0 | ||
| Pfam | 528 | 639 | 112 | 3.1E-26 | ||
| Phobius | 537 | 556 | 20 | - | – | |
| Phobius | 557 | 567 | 11 | - | – | |
| Phobius | 568 | 599 | 32 | - | – | |
| TMHMM | 577 | 599 | 23 | - | – | |
| Phobius | 600 | 619 | 20 | - | – | |
| TMHMM | 620 | 642 | 23 | - | – | |
| Phobius | 620 | 640 | 21 | - | – | |
| Phobius | 641 | 651 | 11 | - | – | |
| Phobius | 652 | 676 | 25 | - | – | |
| TMHMM | 652 | 674 | 23 | - | – | |
| Phobius | 677 | 710 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0318100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…