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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318200 |
| Transcript ID | LotjaGi6g1v0318200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A0R0G953|A0A0R0G953_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0318200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63550882..63552884) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATTGTGCAGACACCTAGAATGAGATAGAAAGAGAAGAAAGGTAAGTGATAGATGGGGTGTAATATATGATGTGAGG TGATAGAATGAAGAGATAGAGGGAATAAAAGTAGGGGAATTTATATATTTTTCTGGGTGTAGTTACTCTTTTGTGGTCTA CCAAGTGTAATTTATATGTTATATTATGTGCAAAGTAATCTAACCATACAAAATTTGAACCAAAATTGCAGCCTTTTCAT GGATGTGGTATACAATGTGGAAGGTTATCGCCAAAGGTGCAACCTGCAGTCATGATTATTCATGATAGAATTCTCCATTC CAGTTTGATTGTTTTTATTTCTGCCATTATTTTTTTCTCCTGATGTTTATTTGCATATTATTATTCTGTTATTGTTTAGA ATGCAAGGAGATTGCAAAAGTTTGGAGAAAAAAGGAAATGCATAACTTGGTACAGAAAATAGTACAGTTGTTAGTAGCGA CAGATAATTCATGGGAATATAGTTCTATAGAAATAGACAAAACAGTTTCAATGGGGAGATCACATCATCCATCCATGAAA CACGAAAAACAAGAGGAGCAACAAAAGGGACAAGAGGCTGCAATCACCAGACCCATTACTTATACCCCTTTGTTGATGGC TGCTTGCAATGGAATCATAGAGATTGTTGAAGAAATAATTCATTTGTATCCTCAGTCAGTCGATCATGTCAGTGAAGATG GGCAGAACATATTGTACATGGTTGTCAAACACCGCCAGCTAGAGATTTTCAATGTTTTAAAGAGATTGAAAATTGTTAGA CGTCTTGCTAGAAAACTAGACAGGGAAAGAAATACTGTCCTCCACTACACTGCAGAGTTTATAGGAGGAAGCCAACCTGG TTATGCTCTTCAATTGCAAGAGGAGTTACGTTGGTTCAAAGTAAGTAATTAGCCTTTTTATCATATATCACAATATGAGA AATGACCCTATAATGTTAATAATTAACATATCCATCTAATTTCCAATTCTGTACTTTTCAGCGGATAGAAAAAAGACTCC CTTATCATTACACCATTCACAAAAACGAGAGCAGACAAACTGCACAGGAACTGTTTGACAAGAAGCATGAACAACTGCTG AAGGATGCTCGAGCATGGATAAAAGAGACAGCTCAGTCATGCTCTGCAGTAGCTGTCCTTATAGCCACTGTTGTCTTTGC AGCAGCTTACACTGTCCCTGGAGGCACAGACAATAATGGCATCCCTAGATTTCTTCAGCATTCTATATTCCAAGTGTTCT TGGTCATGGACATTGTAGCCCTTGTAAGTTCATTGGCTTCAGTGGTCATGTTCCTCTCAATCCTCATATCACCTTGTGAG ATGTGGGATTTTCAGAAGTCTCTCCCTCGCAAACTAATGGCAGGTTTTGCCTTGCTGTTCTTCTCCATGGCCACAACCAT GCTATCATTCAGTGCAACAGTTCTGATCAACATCAAGTTAGAGAAGAACAATTGGACTTCAGTCATGACGTATTGTGCAG CATTCTTGCCCATCAGCATATTTGCTATGATGCAGTTCCCTTTATATGTTGCCATTAATCAATGTGTGAAGAACATATTT GGGAGACTTAAGAAGATCACGCCTCGGTCTCCTCCTCAATTTGGTCAATAGAAGTCGGAGAAATAGACTCTGGGGAAAAG ATGAGAAAAAAAAAACAGTTGAAGGATTGTTAAATCCTCCTTATAATTTCCGCCTGGTGTCCTTTTTTGCTGCTTTGGAG GCTTTAGACTTTATGGAGGTGGGGCAGTGTTAATTTGTTGTGGCTTCTCATCTTGCACTGTGTTATTGGGTTTGGATGGG GTTGTATCAGATAATTTATTTTTTTCACCGGGTATTGGTGTCAGTGTATATACACACTGTTCACTTGCACACACTGGATC ATACACTCTAGGCGGCTGTTTGCTTTCTGTTAGTTGTTGTAAGCTGTTAAACAACTGTTCAGTTAGTTAGCTTAGATGAT TCA
CDS sequence (LotjaGi6g1v0318200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTATTTGCATATTATTATTCTGTTATTGTTTAGAATGCAAGGAGATTGCAAAAGTTTGGAGAAAAAAGGAAATGCA TAACTTGGTACAGAAAATAGTACAGTTGTTAGTAGCGACAGATAATTCATGGGAATATAGTTCTATAGAAATAGACAAAA CAGTTTCAATGGGGAGATCACATCATCCATCCATGAAACACGAAAAACAAGAGGAGCAACAAAAGGGACAAGAGGCTGCA ATCACCAGACCCATTACTTATACCCCTTTGTTGATGGCTGCTTGCAATGGAATCATAGAGATTGTTGAAGAAATAATTCA TTTGTATCCTCAGTCAGTCGATCATGTCAGTGAAGATGGGCAGAACATATTGTACATGGTTGTCAAACACCGCCAGCTAG AGATTTTCAATGTTTTAAAGAGATTGAAAATTGTTAGACGTCTTGCTAGAAAACTAGACAGGGAAAGAAATACTGTCCTC CACTACACTGCAGAGTTTATAGGAGGAAGCCAACCTGGTTATGCTCTTCAATTGCAAGAGGAGTTACGTTGGTTCAAACG GATAGAAAAAAGACTCCCTTATCATTACACCATTCACAAAAACGAGAGCAGACAAACTGCACAGGAACTGTTTGACAAGA AGCATGAACAACTGCTGAAGGATGCTCGAGCATGGATAAAAGAGACAGCTCAGTCATGCTCTGCAGTAGCTGTCCTTATA GCCACTGTTGTCTTTGCAGCAGCTTACACTGTCCCTGGAGGCACAGACAATAATGGCATCCCTAGATTTCTTCAGCATTC TATATTCCAAGTGTTCTTGGTCATGGACATTGTAGCCCTTGTAAGTTCATTGGCTTCAGTGGTCATGTTCCTCTCAATCC TCATATCACCTTGTGAGATGTGGGATTTTCAGAAGTCTCTCCCTCGCAAACTAATGGCAGGTTTTGCCTTGCTGTTCTTC TCCATGGCCACAACCATGCTATCATTCAGTGCAACAGTTCTGATCAACATCAAGTTAGAGAAGAACAATTGGACTTCAGT CATGACGTATTGTGCAGCATTCTTGCCCATCAGCATATTTGCTATGATGCAGTTCCCTTTATATGTTGCCATTAATCAAT GTGTGAAGAACATATTTGGGAGACTTAAGAAGATCACGCCTCGGTCTCCTCCTCAATTTGGTCAATAG
Protein sequence (LotjaGi6g1v0318200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFICILLFCYCLECKEIAKVWRKKEMHNLVQKIVQLLVATDNSWEYSSIEIDKTVSMGRSHHPSMKHEKQEEQQKGQEAA ITRPITYTPLLMAACNGIIEIVEEIIHLYPQSVDHVSEDGQNILYMVVKHRQLEIFNVLKRLKIVRRLARKLDRERNTVL HYTAEFIGGSQPGYALQLQEELRWFKRIEKRLPYHYTIHKNESRQTAQELFDKKHEQLLKDARAWIKETAQSCSAVAVLI ATVVFAAAYTVPGGTDNNGIPRFLQHSIFQVFLVMDIVALVSSLASVVMFLSILISPCEMWDFQKSLPRKLMAGFALLFF SMATTMLSFSATVLINIKLEKNNWTSVMTYCAAFLPISIFAMMQFPLYVAINQCVKNIFGRLKKITPRSPPQFGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 233 | 219 | - | – | |
| PANTHER | 24 | 388 | 365 | 2.6E-129 | – | |
| PANTHER | 24 | 388 | 365 | 2.6E-129 | – | |
| Gene3D | 55 | 221 | 167 | 4.2E-8 | ||
| MobiDBLite | 58 | 78 | 21 | - | – | |
| MobiDBLite | 58 | 76 | 19 | - | – | |
| SUPERFAMILY | 86 | 164 | 79 | 1.11E-7 | ||
| Pfam | 224 | 334 | 111 | 6.9E-27 | ||
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 234 | 251 | 18 | - | – | |
| Phobius | 252 | 270 | 19 | - | – | |
| Phobius | 271 | 295 | 25 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 296 | 314 | 19 | - | – | |
| Phobius | 315 | 335 | 21 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| Phobius | 336 | 346 | 11 | - | – | |
| Phobius | 347 | 371 | 25 | - | – | |
| TMHMM | 352 | 371 | 20 | - | – | |
| Phobius | 372 | 395 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0318200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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