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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0319800 |
| Transcript ID | LotjaGi6g1v0319800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G62470.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial; TrEMBL-Plants: tr|I1M1R0|I1M1R0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63667370..63671246) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATTCTAGTGGGCCAAAGAAGATGAAAGATGGGCCCATCAATGGTTAACCCATCAACCTCACTGTACCAGTTCTATC TTTCCTTTCCTTCACTCCCATTCTCTTTTCTTGCTTTCTGGCTCTGTTAATGGCACTTCAATGACTCTCTCACTCTGTCA CAGAACCAGAACCTCCTCCAACATTCCACCTTCAACGCTGTTCAAAGCTTCTTCACTTCCACATGGCCCCTACTGCATCT TCTCCACCACCCACCTTCGCTCTCTCCATCAGGGACGACGAAATGGATGCCAAATCAGACGACAGCAAGTGCGCTTACCT CATGGTAGCTCTCTGCCCTTGTCTCGTTTGCTTCATTATCCTCTTAATCGCGCTTTCCATCATTCTCGTTGTCAAATTCC ATTTCTTCTGCCACACCCCTTTGCATTCATTGCTCTTCAAAAAGTCATGCTCATAGGGAGTTTTTCTCGGTTACCCATTT CTCGTTTTGGACAAAAGTTTCCGTTTTTGGGGTTTGCTAGTGTTAGTGGGGATGATGATGATGATGATGGTTCTGGGGTT GAATCTGATATTGAGGAAGGTGATGGTAGAGGTGTTGGTGGTGGGTCATGTGCAGATCCTGATGAGGTTGATAGGGTATG CAAGGTGATTGATGAATTGTTTGCATTAGATAGGAACATGGAGGCTGTTCTTGATGAATGTGGGGTGAAGTTATCACATG ATTTGGTTGTTGATGTGTTGCAAAGGTTTAAACATGCTAGGAAGCCAGCATTTAGGTTCTTTTGTTGGGCAGGGCAGCGG CCGGGGTTCGCGCATGATTCCAGGACTTATAACTCCATGATGGGTATTCTGGGGAAGACTAGACAATTTGAGACAATGGT AGCAATGCTTGAGGAAATGGGTGAGAAGGGTCTTTTGACGATGGAGACATTCTCCATTGCTATCAAAGCATTTGCTTTGG CAAAGGAAAGGAAAAAAGCTGTTGGGATCTTTGATCTGATGAAGAAGCATAAATTTAAAGTGGGTGTTGATGCTGTTAAT TTCTTGCTTGGTAGTCTTGTCGCTGCAAAGCTCGGTAAAGAAGCGCAAGTTGTTTTTGAGAAAATGAAAGATAGATTTGA ACACAACTTACAAACTTACACCATACTTCTTAATGGTTGGTGCAGGGTTAAAAACTTGTTGGAGGCAGGGAGGGTGTGGA ATGAGATGATTGATAAGGGGTTTAAGCCAGATATTGTTGCGCATAATATTATGCTTGAAGGGTTGATAAAGTGTAAGAAG AAGTCTGATGGCATTAAGCTATTTGAAGTCATGAAAGCTAAAGGTCCATCGCCGAATGTCCGGAGTTATACAATTATGAT TCAGGATTTCTGCAAACAAAAGATGATGAGAGAAGCTGTTGAGTATTATGATGATATGGTAGATCGTGGGTGTCAACCTG ATGCTGTACTTTACACGTCTTTAATCACTGGTTTTGGGAAGCAGAAGAAAATGGATGTGGTGCATGATCTTCTGAAGGAA ATGAGGGAAAAAGGCTGTCCACCTGATGGGAGGACCTACAACGCTCTGATAAAACTTATGGTAATCCAACATATGCCAGA TGATGCAGCAAGAATATACAAGAAAATGATTCACAGTGGCATCCAACCAACAATCCACACTTACAACATGATGATGAAAT CCTACTTTGTGACTAAAAATTATGAAATGGGTCATGCGGTTTGGGATGAGATGCATCATAAGGGGTGCTGTCCTGATGAT AATTCCTACACTGTATTCATTGGTTCGCTTATACGGCAGGGAATGCCAGATGAGGCATGTAAATATTTAGAGGAAATGAT GGAGAAGGGGATGAAAGCTCCTCAGCTTGATTATAACAAGTTTGGTGCTGATTTTTCTAAAACTGGGAATCCTGTCATAC TTGAGGAGTTAGCTCGAAAGATGAACTTGGCCGGTAAGTTTGAAGTGTCCAATGTCTTGGCCAGTTGGGCTGACATGATG AATAAAAGTGCCAAGAAAAGAGAGCCTTTAAAATCCAGTAGTCATTTTTCATGATTACTGATTGCGTTGCATGCAGGAAA ATCCCAAGGACGTTGATCAACACAATTAGTCCGAGCTATTAGTGAATTTCTATGTATTCTAGTTTTTATGGAAACTTCTT GTGTGCCCTCGCAAATTAGAAAATTCTTAGCACTTTATTTTGTATATAGCTATTGATTGAAACTTACCCAGTGTTGTATA ATGGCTTGTACCAGTTTGAATGAAAAAGTCGATTGATCCTTATTGGAGTTTATCTCGATATTGGGTATTGTTTTACATTA CATGAATCAACAAAATTGATAATTCTGTGCATATAGAAAGTGCAGATTGATTTACTCTAATGCTGGAACAATGGCAGGTA AGTAATGCATGCAAACTGCTTTACATGGGTATTTTTCGATGTAGTTCTATGCAACCTATTATTTCCATTGATATGCTTAA TTTGCAGTATAGCAAGAGATTTGCCTTCAACAAAATTTATGGTCAGGAGTAGAACTCGTTTCATAATTTACCAAAATGTA TTGCAGGATCTAAGAAAAATATATGACAGAAAATCTTGAACTTGAATTCAAACAAATCTGAACTTCATCATCTGACAGTG GAAACAACAGTGCGAGCCCACCACCTGAGACTATCTTTCATGTCAATTTCATTGTTGACAGCATTAATTTTCCAATTCAT CAACGGTTTGTCTTTCTTTCTCCTTTCCTGGTCCTCCCATGCTTCGGAGAGGTAAGGCCTTTGAATTGCAGATTCATTAG AATCCTTTTCTTCCTCAGCATTGTTACCAAACCTTTGCAACCCGGGAATGATTGAAGCCAAGCTTGAGTCTTTATCTTTC TCTGAGAAAACAAAACCCAAATCCATGAACCCTTTTAGCTCCTCAAACTCAAGGTCAGATAAACTCTTTCTCTCCCTTTT CCTCCTTCCCCTTCTTGTTATGTTCTTCTTAGGCAACACTTCAAGCTGCATGTGTGCTTGCTTACCAGCTTCTGTGTCTG TGACATCTTTTCCTGAGAAGATAGTTTGGAGCTTTGGTGAGAAAAAGGCAGGGTCCGGGGAAGGAGAATCATGCTTGAAG CTTGTCATGGAGTTCAACTGGTCACTCATGGACCTGGTATGACCGGTTTGGATGCGCGAAAGCACTGGTTCTAATGATGG TCCTTCTGGGTCTGTGACATCTTTTCCTGAGAAGATAGTTTGGAGCTTTGGTGAGAAAAAGGCAGGGTCTGGGGAAGGAG AATCATGCTTGAAGCTTGTCATGGAGTTCAACTGGTCACTCATGGACCTGGTATGACCGGTTTGGATGCGCGAAAGTACT GGTTCTAATGATGGTCCTTCTTTAACTAGATGATCTGAGTTTACATGAGAACTTGGTGATGTTAAGAAACTTGGTTGCTC CTTCAAATTTTGAATCCCAAACCAGCAAGAATCAAAGAGCTTCAAGATTGCCTCTGCTTCCATGAATGGTTGGTAGGTTT GGAAAAATCAGCAGAGCCTTTTTTGAATTGTATAAGCAGACTATGAATGTCAAGGCATGAAAGGTAAGATAAGAAGATTA ATAATACACCTCATGAATATATTGCCTTTCATGAACCCTGAAATGAGGAGAATTCAACCAATCATCTACACGTTTTGGAG TTGAAGCATTTCTTTATTGATGTTACATTTTGTCGTGTACTGTTTGTATATATCCCAAGTGAAAAAACGTTGCTTTTTCA TGGAAATTGAAGATTTTGTGGAATGGGGTGGCTTTAAAAAGAGGGAAAAGCAAAGGTTGTGTGTGGCTAAATACAAAATT ATGAAAGCTACTAGATAAAGCCATTTATGAGTTTGGG
CDS sequence (LotjaGi6g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTCTCACTCTGTCACAGAACCAGAACCTCCTCCAACATTCCACCTTCAACGCTGTTCAAAGCTTCTTCACTTCC ACATGGCCCCTACTGCATCTTCTCCACCACCCACCTTCGCTCTCTCCATCAGGGACGACGAAATGGATGCCAAATCAGAC GACAGCAAGTGCGCTTACCTCATGGTAGCTCTCTGCCCTTGTCTCGTTTGCTTCATTATCCTCTTAATCGCGCTTTCCAT CATTCTCGTTGTCAAATTCCATTTCTTCTGCCACACCCCTTTGCATTCATTGCTCTTCAAAAAGTCATGCTCATAGGGAG TTTTTCTCGGTTACCCATTTCTCGTTTTGGACAAAAGTTTCCGTTTTTGGGGTTTGCTAGTGTTAGTGGGGATGATGATG ATGATGATGGTTCTGGGGTTGAATCTGATATTGAGGAAGGTGATGGTAGAGGTGTTGGTGGTGGGTCATGTGCAGATCCT GATGAGGTTGATAGGGTATGCAAGGTGATTGATGAATTGTTTGCATTAGATAGGAACATGGAGGCTGTTCTTGATGAATG TGGGGTGAAGTTATCACATGATTTGGTTGTTGATGTGTTGCAAAGGTTTAAACATGCTAGGAAGCCAGCATTTAGGTTCT TTTGTTGGGCAGGGCAGCGGCCGGGGTTCGCGCATGATTCCAGGACTTATAACTCCATGATGGGTATTCTGGGGAAGACT AGACAATTTGAGACAATGGTAGCAATGCTTGAGGAAATGGGTGAGAAGGGTCTTTTGACGATGGAGACATTCTCCATTGC TATCAAAGCATTTGCTTTGGCAAAGGAAAGGAAAAAAGCTGTTGGGATCTTTGATCTGATGAAGAAGCATAAATTTAAAG TGGGTGTTGATGCTGTTAATTTCTTGCTTGGTAGTCTTGTCGCTGCAAAGCTCGGTAAAGAAGCGCAAGTTGTTTTTGAG AAAATGAAAGATAGATTTGAACACAACTTACAAACTTACACCATACTTCTTAATGGTTGGTGCAGGGTTAAAAACTTGTT GGAGGCAGGGAGGGTGTGGAATGAGATGATTGATAAGGGGTTTAAGCCAGATATTGTTGCGCATAATATTATGCTTGAAG GGTTGATAAAGTGTAAGAAGAAGTCTGATGGCATTAAGCTATTTGAAGTCATGAAAGCTAAAGGTCCATCGCCGAATGTC CGGAGTTATACAATTATGATTCAGGATTTCTGCAAACAAAAGATGATGAGAGAAGCTGTTGAGTATTATGATGATATGGT AGATCGTGGGTGTCAACCTGATGCTGTACTTTACACGTCTTTAATCACTGGTTTTGGGAAGCAGAAGAAAATGGATGTGG TGCATGATCTTCTGAAGGAAATGAGGGAAAAAGGCTGTCCACCTGATGGGAGGACCTACAACGCTCTGATAAAACTTATG GTAATCCAACATATGCCAGATGATGCAGCAAGAATATACAAGAAAATGATTCACAGTGGCATCCAACCAACAATCCACAC TTACAACATGATGATGAAATCCTACTTTGTGACTAAAAATTATGAAATGGGTCATGCGGTTTGGGATGAGATGCATCATA AGGGGTGCTGTCCTGATGATAATTCCTACACTGTATTCATTGGTTCGCTTATACGGCAGGGAATGCCAGATGAGGCATGT AAATATTTAGAGGAAATGATGGAGAAGGGGATGAAAGCTCCTCAGCTTGATTATAACAAGTTTGGTGCTGATTTTTCTAA AACTGGGAATCCTGTCATACTTGAGGAGTTAGCTCGAAAGATGAACTTGGCCGGTAAGTTTGAAGTGTCCAATGTCTTGG CCAGTTGGGCTGACATGATGAATAAAAGTGCCAAGAAAAGAGAGCCTTTAAAATCCAGTAGTCATTTTTCATGA
Protein sequence (LotjaGi6g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLSLCHRTRTSSNIPPSTLFKASSLPHGPYCIFSTTHLRSLHQGRRNGCQIRRQQVRLPHGSSLPLSRLLHYPLNRAFH HSRCQIPFLLPHPFAFIALQKVMLIGSFSRLPISRFGQKFPFLGFASVSGDDDDDDGSGVESDIEEGDGRGVGGGSCADP DEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKT RQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKLGKEAQVVFE KMKDRFEHNLQTYTILLNGWCRVKNLLEAGRVWNEMIDKGFKPDIVAHNIMLEGLIKCKKKSDGIKLFEVMKAKGPSPNV RSYTIMIQDFCKQKMMREAVEYYDDMVDRGCQPDAVLYTSLITGFGKQKKMDVVHDLLKEMREKGCPPDGRTYNALIKLM VIQHMPDDAARIYKKMIHSGIQPTIHTYNMMMKSYFVTKNYEMGHAVWDEMHHKGCCPDDNSYTVFIGSLIRQGMPDEAC KYLEEMMEKGMKAPQLDYNKFGADFSKTGNPVILEELARKMNLAGKFEVSNVLASWADMMNKSAKKREPLKSSSHFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 131 | 157 | 27 | - | – | |
| Gene3D | 155 | 325 | 171 | 4.5E-18 | ||
| PANTHER | 199 | 394 | 196 | 4.3E-107 | – | |
| ProSiteProfiles | 226 | 260 | 35 | 10.084 | ||
| TIGRFAM | 229 | 258 | 30 | 3.8E-5 | ||
| Pfam | 229 | 258 | 30 | 3.2E-4 | ||
| ProSiteProfiles | 262 | 294 | 33 | 5.404 | ||
| Pfam | 263 | 291 | 29 | 0.61 | ||
| TIGRFAM | 263 | 294 | 32 | 0.0029 | ||
| ProSiteProfiles | 295 | 325 | 31 | 5.875 | ||
| PANTHER | 297 | 469 | 173 | 4.3E-107 | – | |
| SUPERFAMILY | 315 | 528 | 214 | 9.15E-8 | – | |
| Gene3D | 326 | 465 | 140 | 1.1E-37 | ||
| ProSiteProfiles | 329 | 363 | 35 | 12.09 | ||
| Pfam | 332 | 361 | 30 | 8.5E-5 | ||
| TIGRFAM | 332 | 365 | 34 | 2.6E-8 | ||
| Pfam | 363 | 412 | 50 | 1.4E-12 | ||
| ProSiteProfiles | 364 | 398 | 35 | 10.238 | ||
| TIGRFAM | 366 | 400 | 35 | 0.0026 | ||
| PANTHER | 398 | 574 | 177 | 4.3E-107 | – | |
| ProSiteProfiles | 399 | 433 | 35 | 12.452 | ||
| TIGRFAM | 402 | 435 | 34 | 6.9E-9 | ||
| Pfam | 424 | 480 | 57 | 2.3E-12 | ||
| ProSiteProfiles | 434 | 468 | 35 | 12.222 | ||
| TIGRFAM | 436 | 469 | 34 | 9.7E-9 | ||
| ProSiteProfiles | 469 | 503 | 35 | 10.885 | ||
| TIGRFAM | 472 | 504 | 33 | 5.0E-6 | ||
| Gene3D | 479 | 635 | 157 | 2.0E-22 | ||
| Pfam | 503 | 550 | 48 | 7.7E-10 | ||
| ProSiteProfiles | 504 | 538 | 35 | 10.589 | ||
| TIGRFAM | 506 | 539 | 34 | 3.0E-9 | ||
| ProSiteProfiles | 539 | 573 | 35 | 10.863 | ||
| TIGRFAM | 542 | 572 | 31 | 5.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0319800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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