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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0321000 |
| Transcript ID | LotjaGi6g1v0321000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P0CG32|ZCC18_HUMAN Zinc finger CCHC domain-containing protein 18; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0321000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63751667..63759394) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAAATCAATCAATTAATTAATTGCATAATATTTTAATTTTTTTTGGTACAAGTCTAAAAGAAAAAAATGAAAAAGCA AAAAAAAAACCAAGGAAAACTGGGTGAGACTCGAGCTAACGCCTCACAAACAAGGTACCCAAAGCATCCGTGAGCAGCAA AAGGCTCATCCCCTCAAGAGGGGTCAAAATAGAAACTAATGGGTCTCCATGATAAGCACCATATTAATCTCCCACTAAAA TTTTGATGATATGTCACAAAGTGTGTGCTAGGAACCACTCATCCACTCACTGTGTCAGCAGATGTGTAGAATTGAAGGCA AGAATTATATTGTTTGATTCCCCAACTAGAACATATTTACACGAAAAAACCATGGCAGAACAAAAGCTATTACTAGGCAC GCCATTAAGAAATTACAAAATGGTTGTCCTCGCCAGCATCCACAGAAGTTGCGGGATGAGTTACTATCATTGTCCATGAA TCTTCTTCCATTCCACTCTTCCATAAATTCATTACTAGCAATACCCGAAACATTTTTTTGCAGTTTCACCACATATTTCA CACAACCTGTGGTTAAAAAAGTCAACTTATAAATAATTTATTTGATAAACAGATTGTAATGCAAGGCACTAACTTGACAA TTGACATGATCCAAATGAGAGTGATATAGTACAAAAATAAACATATCCAAGCAGCAACTAACAATACCTGCAAACCGGTA AAAGTAAACCAGGAAATCGATAACACTAACATGTGTTCATCTGTGACTCTTCATGATGTATATATTGTACTATTTAGCAT TAATCTTTACAAATTTGATGCTTGACAACAGAATTAACATCGGGATTATTGAATGAAAACTAATTTTACATGATGCAAGA ATTAGGATTATCATGATCAATTCTAATAGATTGTAACACAATGGCTCTGACTTTGACAAGGGGGAAATTTCCATTCATGA AATAGAACAAGGAACCGGGGCTTTGATGGCATCATTTGAACGAATAAAAATCTTCTATTCGTTTTGTGTCTCTTTCTTGT CCCACAATACATTTTTATCATGTCAGTTAAAAAATACATCTGCTTTACATAGATGAGGTGGTTACAAACTAACATGGATA TTTTTTAACTGATATGACAAAATTTCATTGATGGGATAAAGAAATGAGACATAATTTGGGGCAGGAGATTTTCATCCCAT ATGGACAACAATTAACCTCAGCTCACAACCCATAGAATCAATCTGCTAATCATATTAATGTCTAATCCTTAATCCATCAT CCTAAAGAAGAAGGAAATCCTACCAGTTTTCTGGATGCAATTGTCCAACTCACCCCTTATAGAACCCCATTAGCTATACT AACTCCAAATAGTCTGATTATCATTGATAATTTGGTATCTAAGATAAAGCTGTGTGACTATGTCTGGGTACAATAATGAT GATAGAAGCCCTCCAACTAGAGATGTACCTGTCCAAAGCCGGGTAGCAACGGAGAAAACTAACCAGTTCATTAATGATAA TTATAATGATAAGAAAGGTAAATTCCAAGAGCCCAGCCTCAAATTATGGGGCCTTATGAAGGAAAAACTCAAGCATAAGC CCAGCTATGAAGGACAGATAACAAGAGTACTGGAAAGTCCAGCTTAAATCCTTTTCTAATTTAAAACACATTTACAAGGA TTCCACATACCTCAATAAAAGGACAAGCAATGGAAAGATAAAAAGATAAAACCTATCAATATTATTGTTGAAGTCATAAA TTTTCCAAATTAAACTAAGGTAACTGCAGCACACATATGCTCAGAGCATAACAAAAGAGCAAGAGGAGCATTTGCTTTCA GAAATTGTGCAAATGGATGATAAGGAGCAAGAACTTATGAACCTCTAGCTTTAGTAATTCAAAATAATAACAAGAAACAT CAGGAAGGAATGTAATCAATTGATAATGCTTCAATGCAAAACATTCAAAAATACACCAATGTTATTGTTGATCTAAAAAC TAGATCAAACTGATATATTTGGCAACAAATACCTGTTTCCCTTAAGCTTGAACCAGGCCTCAGCACAATGAAGGTGTGCA ATTCCTAGCTCTTCTTTACACGCGCACCCAAGCTGAATCAAATCTGCACTTTTAGCACTGTTAGCAGTGCCATCAATTGC TGCATCTGATGGCTGCCCAGTAGCTAGATGGCAAATCCTACAAATCCTTTTGCCTTCGGAATTCTCACAAAATCCCTTGC GGCTGCTGCACTTTATATTAATCACACATGAATTTTTACTTGTTTCAGACACTCCATTATTTGGTGCTTTCATGGACACC AAACTCAACCCTGATTGGTCACCTTTTGCTTCCAATTTCCCATTATCTCCATCCATGTACTCAGGGTCTATCACAACCAC AGTCTCAAGCACTTCCTGGTTAACCAAATTGTTTGAACTATAACTAGCTCCTTGATCAACCTCAGGCAATTCATCACTGA AATTCTCTTGTTCAATCTTCTCCTGACCCTTAGAATCATCCTTTAGCTCCTTATTTGACCCTGGAATCCTCAGCCACCTC TCTTGAAGTTCCAACTTCTCCACTTATACCAGCCCTGCCATTCAAGCTGCTACCATCTACTGCATCAATTGCAGCCCCTT CATGAGCTAGTTCTAATACAGACTAACAATAGTTTGTTAGGCAGTTAGATTAGTTACTAGTTTGTTACTAGTTTGTTAGA GGTAGTTCAGTTAGTTATTAGTAGTTTGTTAGCAGTAGTTTTAACACTAATAGAGTGTGTATTTAAAGCAAGATTGCAAT TGATGTAAATGACCAATTTCATTTTTCACTTTACTGAATAACAATTCATCAATTCTCTCAATTCTCAATATGGTATCAGA GCTCTCTTAGAGAGAGCTCTGTTGTGCACTCTGATTTTTCCTTTTCCTATTCTGGTTCGCGAAGCTTCTTCAACCTCGAG ATTCCCCTGAGCGTTTCTTGAAGCTTCTTCGTTCTCGCAACCAGATCTGGCTATGGCAGCCATGGCAACTCCTTATCCTT ACACAGTTGAAGATGTCTTGGTCACTTCTTGTCCACTCTACGTGCATCCCAACGAGAATCCATCGATGATTCTCGTTTCA CCTCCGTTATCTGAGAGCAATTATCACAGTTGGTCCAGATCGATGAGGATGAGTTTGTTGACGAAGAACAAACTCGGTTT GGTGGATGGATCGCTGCCTGAACCTGCAGAGGATCATGCGATTCATCCTTTCTGGCAACGATGCAATACGATGGTTCTTG GCTGGATGATCCGTTCCATGAACGTTGAAATCGCGCAATCGATCCTGTGGCGTGAAAAGGCGATCGATGTTTGGAAAGAG TTGAAGGAACGCTTCTCACAAGCGGATCTTTTCCGAATTTCTGAGCTTCAAGAAGAGATTTACAGCTTGAAGCAAGGCGA TCTTTCCGTAACAAAGTATTTCACGGCGATGAAGATCCTGATTGATGAATTGGAGGTACTCAAACCACTACCTTCTTGTA CCTGTGAAGCTCTGGTCAAGATCAAGGAAGAACGAAATTCAGATCATGTGATTCGTTTTCTTCGAGGTCTCAGTGAGCAA TTCTCAGGCGTTAGGTCACAGATTATGCTTATGGATCCTCTTCCTAGCATAAATCGTGTTTTTCAATTGGCTGCTCAGCA AGAACGGCAATTTGCAGTTGAGCATGTTCCAAAGGCTTTAATGGCGAATGCGAGTGGAGCATCAGATTCTCAGCGCTCGC ATCACAGTGGAGGTAAATCCTCAAATTTTCACTCTGGAAGCACTTCTGGTGCTTATCATTCTGGAAGCACTTCTGGTGCT GGTGGCAATCGCGGTTCTCATGGAAACTCCAACAGTGGATACCATAATCAAGCTCGTAGGATTTGTTCTTATTGTGGCAA AACTGGACACACTGTTGATGTGTGCTACAAGAAGCACGGTTATCCCCAAAGCTTCAAATCCAAGACTGCTAATTCTCAGG GGCATCAGAAGCATGCAAATCTGGCTATGGGTGCTGATTCAGGAGCAAGCACAGAGGATGATGATGCTGGTTCCACTCAT GGAGATCACACCAGGTTTAGCCTTACTGAAGCTCAATACAACAGTTTGATTTCTCTCTTACCTTCACAAGATCAGGAGCA TCAACGCACTGCCAAAGTCAATTTTGCTCCAACTACCAAGACTTCTGTTGTTGCTCAACACAATACTGTGACTGTCCCTA CCAAGAATGGTAAACTCAAACCTCTCCAATGGATCATTGATACAGGAGCCACAGACCACATTTCTTGCACTTTATCAGTT TTTGTGTCATATAAACGCATAAAGCCTATTCTTGTGAATCTTCCTAATGGTTCATCACTTACTGCACATTTTTCTGGCAC TGTTATGTTCACAGATAGCTTTTACCTGGTTGATGTTCTTTATCTTCCAGAATTCCATTTCAATTTGATCTCAGTGACCA AGCTTGTTAACACACTAGCTTGCAGACTAATTTTCCTTCCTAAATTGTGTTTGATACAGGATACCAAAGCCTGGAGGATG ATTGGTGCAGCTAAAGAGGTTGAAGGACTCTACTATCTTGCTACTCCAACACTGGCTACGCCTCATTTGACTTCATCACC TCGATTGTCAACTTGTTTTTCTGCTGCCACAACAGTACAATCCTCAAGTTTGTGGCATTTTCGTCTAGGCCATCCTTCTC TAGATAGGCTTAGACTCTTAGGTAAAGATTTTCCATATATTGTTTGCAATAAAGATCTTGTTTGTGAGACTTGTCATATA GCCAAACAGAGGAAATTGTCCTTTCCTGATAGTGAAAGCAGATCTAATAAAGCTTTTGATTTGATTCATATTGACATTTG GGGTCCTTGTTCTGTTTCTTCAATGCATGGTCATCGTTTTTTCTTAACTATTGTTGATGATTATTCAAAATTTACTTGGC TGTTTCTGTTACAAGCTAAGTCAGAGGTCAAGGAATTAATTCCTTCCTTTTGTGCCATGGTTGAAACTCAGTTTCAGGGT CAAGTTAAGGTAGTTAGATCAGACAATGGACCTGAATTTTTCTTAACACAATTTTACTCCTCAAAAGGAATTATACATCA ACGGGTGTGTGTAGAAACTCCTCAACAAAACTCAGTTGTTGAGAGAAAGCACCAACACTTATTGAATGTTACTCGATCCT TGCTTTTCCAAGCCAATTTACCCAAAGTTTTTTGGTCTCATGCAGTAGCTCATGCTACTTTCCTCATTAATAGGTTACCT GTTCCTTCATTAGGTAACAAAACACCTTATGAACTTTTGTATCACAAACTTCCTGATTTTAGCTTTCTCAAAACTTTTGG TTCATTGTGCTATGCATCTACACTTTCCAGAAATAGGACAAAGTTAGATCCTAGAGCTCGTAGGTGTGTGTTCATAGGCT ATAGACAAGGTACAAAAGGTTATTTGCTTTTTGACATGAAATCACGAGAAGTCTTACTCTCTAGACATGTGATATTTCAT GAAACAGACTTCCCTTTCCAAACTTTGGATCATAATCTTGATGCTTGTGCCCATACTAGTCCTTCCTTGCCTAGTTTTCT AGGGGCTGAGGCCCTTGATTACACTTCTTTACCCACAGGACCAAACATTGATTCAGTACACCCCACCCCTGAAGTTTTGC CTACTCCCCAGCCTGTTACACGACATTCCACTCGTTCCCGTCGTGTCCCTTCTCACCTTCATGATTATCAGTTAACCGTG CCTCCCTCTATAGCTGCTGCACATTCTTCCTCAAAGGTTTATTCAGGTATCAAACATCCATTATCCTCTGTTATGTCTTA TCACACTTTGTCTCCCACCCATTATGCTTTTACCACTAACATTTCTACAGTTGTTGAGCCTAAGACTTATACACAAGCTG CACAGTGCAAGGAATGGCGTGATGCCATGGATAAGGAGTTAGAAGCTTTGGCTCGCAACAACACTTGGATAATTGTTGAT TTGCCTCCCACCAAGAAACCAATTGGTTGCAAGTGGGTTTATCGTGTCAAACACAAGCCAGATGGGTCTATTGATCGCTA CAAAGCGCGTCTTGTAGCCAAAGGCTATACTCAAGTTGCAGGCCTTGATTATCTGGATACTTTTTCACCGGTTGCGAAGA TGACTACTCTTCGACTACTGTTAGCTCTTGCCGCATCTCAAAATTGGTTTCTCCATCAGCTTGATGTCGACAACGCATTT CTTCATGGCTCCTTAGATGAGGAGATCTACATGCGTCTCCCTCCTGGTGTTAATACTCCTCAGCCCAATCAGGTCTGTCT TCTGCAGAAGTCCCTTTACGGGTTGAAGCAGGCAAGCAGACAATGGTACCAAACATTGGTGACTACTCTAACATCTCTGG GCTATGAACAGTGTCCACATGACCACACTTTGCTACTTAAGCGCACGTCTACTTCAGTTACTGCCTTGCTCTTATATGTG GATGATGTCTTACTTACTGGCAATTGTTATGAAGAAATTCAGCTTGTCAAAGCCTTTCTTCACAGTAAATTTCGAATCAA GGATCTAGGCAACCTCAAATATTTCCTTGGCTTAGAGGTGGCTAGATCTACCAAAGGCATTTGTCTTACTCAACGCAAGT ATGCTCTTGAACTTCTCACTGATGCAGGTCTCCTTGGCTGCAAGTCAGTTCGCACTCCAATGGATTCTACCTTGCATCTT TCTCAGCATAGTGGTACTCCTCTTGATGATCCCACTAGCTATCGTCGTTTGGTTGGAAGGTTGCTTTACCTCACCACGAC TAGACCTGACTTAAACTATGCTGTTCAGCAATTAAGTCAATTTCTTGCTTCTCCAACTGATGTTCATCAGCAAGCTGCAA CTCGTGTTCTTCGTTATGTCAAAGGAGCACCTGGTCAAGGTCTTTTTTTCTCAGCTGATTCTCCACTGAAGCTCCAAGCC TATAGTGATTCTGACTGGGCTGGTTGCCCCGATACTCGACGTTCTGTCACTGGATATTCCATATTTCTTGGCACCTCTCT AATTTCATGGCGCACGAAGAAACAAACCACTGTTTCTCGTTCATCCTCTGAGGCAGAGTATAGGGCCCTTGCTGCTACTG TGTGTGAAGTCCAGTGGCTCTCCTATTTGTTCCAGTTCCTCAAGCTCAATGTTCCATTACCGGTTCCTCTCTTTTGTGAC AATCAGTCTGCGCTTCACATTGCTCACAATCCGACATTTCACGAGAGGACCAAACACATAGAACTGGATTGTCATGTTGT CCGTGCCAAGTTGCAAGCTGGCTTGATCCATCTCCTGCCTATTTCCACTCACCATCAGCTAGCTGACATTTTTACCAAAC CTTTGCCCCCATCTTTGTTTCCCACTTTTGTAACCAAGCTGGGCTTGTATAATCTCCATGCTCCAGCTTGTGGGGGGGTA ATACAGACTAACAATAGTTTGTTAGGCAGTTAGATTAGTTACTAGTTTGTTACTAGTTTGTTAGAGGTAGTTCAGTTAGT TATTAGTAGTTTGTTAGCAGTAGTTTTAACACTAATAGAGTGTGTATTTAAAGCAAGATTGCAATTGATGTAAATGACCA ATTTCATTTTTCACTTTACTGAATAACAATTCATCAATTCTCTCAATTCTCAATAAGTTCCACTACATCATCACTGCCTT TGCTTTGAGCTAGATCCATTGACAATTCGTTCCACTTTCAAACCTGGA
CDS sequence (LotjaGi6g1v0321000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCCATGGCAACTCCTTATCCTTACACAGTTGAAGATGTCTTGGTCACTTCTTGTCCACTCTACGTGCATCCCAA CGAGAATCCATCGATGATTCTCGTTTCACCTCCGTTATCTGAGAGCAATTATCACAGTTGGTCCAGATCGATGAGGATGA GTTTGTTGACGAAGAACAAACTCGGTTTGGTGGATGGATCGCTGCCTGAACCTGCAGAGGATCATGCGATTCATCCTTTC TGGCAACGATGCAATACGATGGTTCTTGGCTGGATGATCCGTTCCATGAACGTTGAAATCGCGCAATCGATCCTGTGGCG TGAAAAGGCGATCGATGTTTGGAAAGAGTTGAAGGAACGCTTCTCACAAGCGGATCTTTTCCGAATTTCTGAGCTTCAAG AAGAGATTTACAGCTTGAAGCAAGGCGATCTTTCCGTAACAAAGTATTTCACGGCGATGAAGATCCTGATTGATGAATTG GAGGTACTCAAACCACTACCTTCTTGTACCTGTGAAGCTCTGGTCAAGATCAAGGAAGAACGAAATTCAGATCATGTGAT TCGTTTTCTTCGAGGTCTCAGTGAGCAATTCTCAGGCGTTAGGTCACAGATTATGCTTATGGATCCTCTTCCTAGCATAA ATCGTGTTTTTCAATTGGCTGCTCAGCAAGAACGGCAATTTGCAGTTGAGCATGTTCCAAAGGCTTTAATGGCGAATGCG AGTGGAGCATCAGATTCTCAGCGCTCGCATCACAGTGGAGGTAAATCCTCAAATTTTCACTCTGGAAGCACTTCTGGTGC TTATCATTCTGGAAGCACTTCTGGTGCTGGTGGCAATCGCGGTTCTCATGGAAACTCCAACAGTGGATACCATAATCAAG CTCGTAGGATTTGTTCTTATTGTGGCAAAACTGGACACACTGTTGATGTGTGCTACAAGAAGCACGGTTATCCCCAAAGC TTCAAATCCAAGACTGCTAATTCTCAGGGGCATCAGAAGCATGCAAATCTGGCTATGGGTGCTGATTCAGGAGCAAGCAC AGAGGATGATGATGCTGGTTCCACTCATGGAGATCACACCAGGTTTAGCCTTACTGAAGCTCAATACAACAGTTTGATTT CTCTCTTACCTTCACAAGATCAGGAGCATCAACGCACTGCCAAAGTCAATTTTGCTCCAACTACCAAGACTTCTGTTGTT GCTCAACACAATACTGTGACTGTCCCTACCAAGAATGGATACCAAAGCCTGGAGGATGATTGGTGCAGCTAA
Protein sequence (LotjaGi6g1v0321000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAMATPYPYTVEDVLVTSCPLYVHPNENPSMILVSPPLSESNYHSWSRSMRMSLLTKNKLGLVDGSLPEPAEDHAIHPF WQRCNTMVLGWMIRSMNVEIAQSILWREKAIDVWKELKERFSQADLFRISELQEEIYSLKQGDLSVTKYFTAMKILIDEL EVLKPLPSCTCEALVKIKEERNSDHVIRFLRGLSEQFSGVRSQIMLMDPLPSINRVFQLAAQQERQFAVEHVPKALMANA SGASDSQRSHHSGGKSSNFHSGSTSGAYHSGSTSGAGGNRGSHGNSNSGYHNQARRICSYCGKTGHTVDVCYKKHGYPQS FKSKTANSQGHQKHANLAMGADSGASTEDDDAGSTHGDHTRFSLTEAQYNSLISLLPSQDQEHQRTAKVNFAPTTKTSVV AQHNTVTVPTKNGYQSLEDDWCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 25 | 72 | 48 | 4.2E-18 | ||
| PANTHER | 56 | 374 | 319 | 2.0E-77 | – | |
| PANTHER | 56 | 374 | 319 | 2.0E-77 | – | |
| Pfam | 81 | 218 | 138 | 7.3E-10 | – | |
| MobiDBLite | 240 | 289 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0321000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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