Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324800 |
| Transcript ID | LotjaGi6g1v0324800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G28690.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690, mitochondrial; TrEMBL-Plants: tr|I1M1W2|I1M1W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64033393..64034970) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACAATGGAATACTCAGACCTTTTTTCTCCTCTCGTGCCCTCTTCTCACCCCACCAACCATTTCTGCAAAACCATGA CTTTGTTCCACACTCTACCTTGCTCTCCAATACTCTGCAGTACTACATCAACTCCGACACTCCTTCCTTCGGCCAAACGA TCCATTCCCACATTCTCAAAACTGGCTTTGTTCCCAACACTAATATTTCTATCAAACTACTTGTATTGTACCTTAAATGT AATTGTTTAAGATATGCACGCCAGGTGTTTGATGATTTGCGGGACAAAACTTTATCAGCTTATAATTATATGATTGGTGC CTATCTCAAACAAGGACAAGTTGAAGAGTCACTTGGTTTGGTTCGTAGGCTTTTAGTGTCTGGGGAAAAGCTTGATGGGT TTACTTTTTCAATGATTTTAAAGGCGTCTACGTCTACTTCAGGACGTAATGTTGCGCCCCTTGGTGACCTTGGAAGAATA GTGCACGTGCAGATTCTGAAAGCTGATGTTGATGTTGAGAAAGATGATGTTCTTTGTACAGCGCTTACTGACTCTTATGT TAAGAATGGTAGGATTGCTTATGCGAGGACTGTGTTTGATGTAATGTCGGAGAAAAATGTCATATCTTCGACATCTCTCA TCTCGGGTTACATGAATCAAGGCCTTTTCAAAGATGCAGAATGTATATTTCAGAAAACAGTGGACAAGGATATAGTGGTG TTTAATGCTATGATTGAAGGCTACAGCAAGACATCCGAATGTGCTACGAGATCCCTTGAAGTTTACATTGACATGCAACG GTTGAACTTTAGGCCGAACATTTCTACATTTGCTAGCATAATTGGTGCTTGTTCCATGGTTGCTGCATTTGAAGTTGGGC AACAAGTACAGAGTCAGCTTATGAAGACACCATTTTTTGGGCATATAAAATTAGGAAGTGCCCTTATAGACATGTATTCC AAATGTGGAAGAGTTGTAGATTCTCGAAGAGTTTTTGACCACATGCATCAGAAGAATGTTTTTTCATGGACATCTATGAT TGATGGATATGGGAAGAATGGATTCCCTGATGAAGCACTTGAACTATTTCAAAAGATGCAGATAGAGTATGGCGTTGTAC CCAATTTTGTGACATTCCTCAGTGCTCTCTCAGCTTGTGCACATGCTGGACTTGTGGATAAGGGTTTGGAGATCTTTCAG AGCATGGAGAATGAATACAAGGTTAAGCCAAGGATGGAGCATTATGCTTGCGTGGTTGATCTGTTAGGACGAGCAGGAAG GCTGAATCAGGCTTGGGAGTTTGTCATGAGGATGCCGGAGAGACCCAATTCAGATGTGTGGGCTGCTTTACTTAGTTCTT GCAGACTACATGGGAATACAGAGATGGCGAAATTAGCTGCAAGTGAGCTTTTTAAGCTGAATGCTAATGGACGACCTGGG GCATATGTTGCACTGTCTAATACTTTGGCAGCTGCTGAGAAATGGGATAGTGTTAGTGAGCTTAGAGAAGTAATGAAGGA GAGGGGAATATCCAAGGATACTGCCTGCAGTTGGGTTGGAGCTGATAGTGTTTATTAG
CDS sequence (LotjaGi6g1v0324800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAATGGAATACTCAGACCTTTTTTCTCCTCTCGTGCCCTCTTCTCACCCCACCAACCATTTCTGCAAAACCATGA CTTTGTTCCACACTCTACCTTGCTCTCCAATACTCTGCAGTACTACATCAACTCCGACACTCCTTCCTTCGGCCAAACGA TCCATTCCCACATTCTCAAAACTGGCTTTGTTCCCAACACTAATATTTCTATCAAACTACTTGTATTGTACCTTAAATGT AATTGTTTAAGATATGCACGCCAGGTGTTTGATGATTTGCGGGACAAAACTTTATCAGCTTATAATTATATGATTGGTGC CTATCTCAAACAAGGACAAGTTGAAGAGTCACTTGGTTTGGTTCGTAGGCTTTTAGTGTCTGGGGAAAAGCTTGATGGGT TTACTTTTTCAATGATTTTAAAGGCGTCTACGTCTACTTCAGGACGTAATGTTGCGCCCCTTGGTGACCTTGGAAGAATA GTGCACGTGCAGATTCTGAAAGCTGATGTTGATGTTGAGAAAGATGATGTTCTTTGTACAGCGCTTACTGACTCTTATGT TAAGAATGGTAGGATTGCTTATGCGAGGACTGTGTTTGATGTAATGTCGGAGAAAAATGTCATATCTTCGACATCTCTCA TCTCGGGTTACATGAATCAAGGCCTTTTCAAAGATGCAGAATGTATATTTCAGAAAACAGTGGACAAGGATATAGTGGTG TTTAATGCTATGATTGAAGGCTACAGCAAGACATCCGAATGTGCTACGAGATCCCTTGAAGTTTACATTGACATGCAACG GTTGAACTTTAGGCCGAACATTTCTACATTTGCTAGCATAATTGGTGCTTGTTCCATGGTTGCTGCATTTGAAGTTGGGC AACAAGTACAGAGTCAGCTTATGAAGACACCATTTTTTGGGCATATAAAATTAGGAAGTGCCCTTATAGACATGTATTCC AAATGTGGAAGAGTTGTAGATTCTCGAAGAGTTTTTGACCACATGCATCAGAAGAATGTTTTTTCATGGACATCTATGAT TGATGGATATGGGAAGAATGGATTCCCTGATGAAGCACTTGAACTATTTCAAAAGATGCAGATAGAGTATGGCGTTGTAC CCAATTTTGTGACATTCCTCAGTGCTCTCTCAGCTTGTGCACATGCTGGACTTGTGGATAAGGGTTTGGAGATCTTTCAG AGCATGGAGAATGAATACAAGGTTAAGCCAAGGATGGAGCATTATGCTTGCGTGGTTGATCTGTTAGGACGAGCAGGAAG GCTGAATCAGGCTTGGGAGTTTGTCATGAGGATGCCGGAGAGACCCAATTCAGATGTGTGGGCTGCTTTACTTAGTTCTT GCAGACTACATGGGAATACAGAGATGGCGAAATTAGCTGCAAGTGAGCTTTTTAAGCTGAATGCTAATGGACGACCTGGG GCATATGTTGCACTGTCTAATACTTTGGCAGCTGCTGAGAAATGGGATAGTGTTAGTGAGCTTAGAGAAGTAATGAAGGA GAGGGGAATATCCAAGGATACTGCCTGCAGTTGGGTTGGAGCTGATAGTGTTTATTAG
Protein sequence (LotjaGi6g1v0324800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNGILRPFFSSRALFSPHQPFLQNHDFVPHSTLLSNTLQYYINSDTPSFGQTIHSHILKTGFVPNTNISIKLLVLYLKC NCLRYARQVFDDLRDKTLSAYNYMIGAYLKQGQVEESLGLVRRLLVSGEKLDGFTFSMILKASTSTSGRNVAPLGDLGRI VHVQILKADVDVEKDDVLCTALTDSYVKNGRIAYARTVFDVMSEKNVISSTSLISGYMNQGLFKDAECIFQKTVDKDIVV FNAMIEGYSKTSECATRSLEVYIDMQRLNFRPNISTFASIIGACSMVAAFEVGQQVQSQLMKTPFFGHIKLGSALIDMYS KCGRVVDSRRVFDHMHQKNVFSWTSMIDGYGKNGFPDEALELFQKMQIEYGVVPNFVTFLSALSACAHAGLVDKGLEIFQ SMENEYKVKPRMEHYACVVDLLGRAGRLNQAWEFVMRMPERPNSDVWAALLSSCRLHGNTEMAKLAASELFKLNANGRPG AYVALSNTLAAAEKWDSVSELREVMKERGISKDTACSWVGADSVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 22 | 153 | 132 | 8.5E-13 | ||
| PANTHER | 33 | 144 | 112 | 3.4E-90 | – | |
| ProSiteProfiles | 97 | 131 | 35 | 9.12 | ||
| Pfam | 100 | 128 | 29 | 0.0011 | ||
| TIGRFAM | 100 | 132 | 33 | 3.8E-4 | ||
| PANTHER | 157 | 238 | 82 | 3.4E-90 | – | |
| Gene3D | 163 | 303 | 141 | 7.0E-22 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.703 | ||
| Pfam | 178 | 207 | 30 | 0.056 | ||
| TIGRFAM | 178 | 207 | 30 | 0.0027 | ||
| Pfam | 236 | 284 | 49 | 7.5E-8 | ||
| ProSiteProfiles | 237 | 272 | 36 | 9.854 | ||
| PANTHER | 241 | 506 | 266 | 3.4E-90 | – | |
| ProSiteProfiles | 273 | 303 | 31 | 5.031 | ||
| ProSiteProfiles | 308 | 338 | 31 | 7.169 | ||
| Gene3D | 309 | 406 | 98 | 1.8E-25 | ||
| TIGRFAM | 314 | 340 | 27 | 0.0019 | ||
| Pfam | 338 | 387 | 50 | 4.1E-10 | ||
| ProSiteProfiles | 339 | 374 | 36 | 12.036 | ||
| TIGRFAM | 341 | 375 | 35 | 6.6E-10 | ||
| ProSiteProfiles | 375 | 405 | 31 | 8.298 | ||
| TIGRFAM | 377 | 410 | 34 | 0.0011 | ||
| Gene3D | 407 | 522 | 116 | 8.9E-12 | ||
| ProSiteProfiles | 411 | 441 | 31 | 7.333 | ||
| ProSiteProfiles | 478 | 512 | 35 | 7.125 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0324800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…