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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0328000 |
| Transcript ID | LotjaGi6g1v0328000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G46100.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100; TrEMBL-Plants: tr|K7M1G6|K7M1G6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64322823..64324262) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAGTAGAACTTTGTTTAAGTGGCCAAAGCAAATTACAAGTTCCTTAGTGGAGCAGTTGATAAAAGCAGAAAAGGA TATAAACAAAGCTGTTCTTATGTTTGATTCTGCCACAGCTGAGTACAGTAATGGGTTTCGTCATGATCACACGACCTTTG GTGTCATGATCTCGAGGTTAGTCGCTGCGAATCAGTTCAGGTCAGCGGAAGGGTTGTTGGAGAGAATGAAGCAAGAAAAT TGTGTTGTTACAGAAGACATACTTTTAACTATATGCAGGGGTTATGGACGTGTGCATAGGCCACTTGATGCCATCAGGGT TTTTCATAAGATGGAAGATTTTCAGCTGAAGTTCACTCAGAAATCTTACCTTACAGTCATTGATATCCTTGTGGAGGAGA ACCATGTAAAAAGGGCTATTGCTTTTTACAGGGAGATGAGGAAAATGGGCATTCCGCCCAGTGTTGTTTCCCTCAATATT TTGATCAAGGCCCTCTGCAAAAACAAGGAAACTATTGATTCTGCTTTACAGATATTTCATGAGATGCCCAACCGTGGATG CCAACCTGATTCATATACGTACGGTACATTGATTAATGGGCTGTGCAGAATGGGAAGTGTCAGTGAGGCTAAGGAACTAT TCAATGAGATGGAGGAGAAAGGTTTTTCACCTTCTGTTGTTACCTATACTAGTTTGATACATGGAATGTGTCAGTCGGAT AATTTGGGTGAAGCTATAAGATTGCTTGAAGAGATGAAAAAAAATGGCATTGAGCCAAATGTTTTTACGTACAGTACTTT AATGGATGGTTTATGTAAAGGTGGTCATTCATTACAAGCAATGGAATTGTTAGAAATGATGGTTACAAAACATAATCGGC CTAACATGGTCACTTATGGTACTTTAATCAATGGGCTGTGTAAAGAAGGAAAATTTAGTGAAGCTGTCGAGATTCTTGAC AGGATGAGGCTTCAAGGTTTGAAACCAAATGCAGGGTTGTATGGGAAAATCATAAGTGGCTTCTGTGCTGCATCCAGCTA TCAAGATGCTGCAAACTTTATTGATGAGATGGTGCTTGGCGGTATCTCACCGAGTCGAGCAACTTGGAGCCTTCATGTTA GAATGCATAACACGGTGGTCCAAGGTCTTTGTAGTAATGTTGATTCTCCTCGAGCATTTCAGTTGTATCTTAGCATGCGT ACTAGGGGTATCTCTATTGAAATTGACACTTTTGACTGTTTAATCAAATGTTTTTGCAAGCGAGGGGACCTCAACAAAGC TGCTCGAATTCTTGAAGAGATGATATCAGACGGCTGCGTTCCAGATAAGGGTATATGGGATGTAGTAATGGGTGGGCTCT GGGATCGGAAAAAAGTGAGAGAAGCCACTGAACTATTGCTGGCTGAGCTGGAGAAAAAGTTTGTTGATGCTGAAAGTTGA
CDS sequence (LotjaGi6g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGTAGAACTTTGTTTAAGTGGCCAAAGCAAATTACAAGTTCCTTAGTGGAGCAGTTGATAAAAGCAGAAAAGGA TATAAACAAAGCTGTTCTTATGTTTGATTCTGCCACAGCTGAGTACAGTAATGGGTTTCGTCATGATCACACGACCTTTG GTGTCATGATCTCGAGGTTAGTCGCTGCGAATCAGTTCAGGTCAGCGGAAGGGTTGTTGGAGAGAATGAAGCAAGAAAAT TGTGTTGTTACAGAAGACATACTTTTAACTATATGCAGGGGTTATGGACGTGTGCATAGGCCACTTGATGCCATCAGGGT TTTTCATAAGATGGAAGATTTTCAGCTGAAGTTCACTCAGAAATCTTACCTTACAGTCATTGATATCCTTGTGGAGGAGA ACCATGTAAAAAGGGCTATTGCTTTTTACAGGGAGATGAGGAAAATGGGCATTCCGCCCAGTGTTGTTTCCCTCAATATT TTGATCAAGGCCCTCTGCAAAAACAAGGAAACTATTGATTCTGCTTTACAGATATTTCATGAGATGCCCAACCGTGGATG CCAACCTGATTCATATACGTACGGTACATTGATTAATGGGCTGTGCAGAATGGGAAGTGTCAGTGAGGCTAAGGAACTAT TCAATGAGATGGAGGAGAAAGGTTTTTCACCTTCTGTTGTTACCTATACTAGTTTGATACATGGAATGTGTCAGTCGGAT AATTTGGGTGAAGCTATAAGATTGCTTGAAGAGATGAAAAAAAATGGCATTGAGCCAAATGTTTTTACGTACAGTACTTT AATGGATGGTTTATGTAAAGGTGGTCATTCATTACAAGCAATGGAATTGTTAGAAATGATGGTTACAAAACATAATCGGC CTAACATGGTCACTTATGGTACTTTAATCAATGGGCTGTGTAAAGAAGGAAAATTTAGTGAAGCTGTCGAGATTCTTGAC AGGATGAGGCTTCAAGGTTTGAAACCAAATGCAGGGTTGTATGGGAAAATCATAAGTGGCTTCTGTGCTGCATCCAGCTA TCAAGATGCTGCAAACTTTATTGATGAGATGGTGCTTGGCGGTATCTCACCGAGTCGAGCAACTTGGAGCCTTCATGTTA GAATGCATAACACGGTGGTCCAAGGTCTTTGTAGTAATGTTGATTCTCCTCGAGCATTTCAGTTGTATCTTAGCATGCGT ACTAGGGGTATCTCTATTGAAATTGACACTTTTGACTGTTTAATCAAATGTTTTTGCAAGCGAGGGGACCTCAACAAAGC TGCTCGAATTCTTGAAGAGATGATATCAGACGGCTGCGTTCCAGATAAGGGTATATGGGATGTAGTAATGGGTGGGCTCT GGGATCGGAAAAAAGTGAGAGAAGCCACTGAACTATTGCTGGCTGAGCTGGAGAAAAAGTTTGTTGATGCTGAAAGTTGA
Protein sequence (LotjaGi6g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSRTLFKWPKQITSSLVEQLIKAEKDINKAVLMFDSATAEYSNGFRHDHTTFGVMISRLVAANQFRSAEGLLERMKQEN CVVTEDILLTICRGYGRVHRPLDAIRVFHKMEDFQLKFTQKSYLTVIDILVEENHVKRAIAFYREMRKMGIPPSVVSLNI LIKALCKNKETIDSALQIFHEMPNRGCQPDSYTYGTLINGLCRMGSVSEAKELFNEMEEKGFSPSVVTYTSLIHGMCQSD NLGEAIRLLEEMKKNGIEPNVFTYSTLMDGLCKGGHSLQAMELLEMMVTKHNRPNMVTYGTLINGLCKEGKFSEAVEILD RMRLQGLKPNAGLYGKIISGFCAASSYQDAANFIDEMVLGGISPSRATWSLHVRMHNTVVQGLCSNVDSPRAFQLYLSMR TRGISIEIDTFDCLIKCFCKRGDLNKAARILEEMISDGCVPDKGIWDVVMGGLWDRKKVREATELLLAELEKKFVDAES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 127 | 124 | 6.3E-16 | ||
| PANTHER | 19 | 276 | 258 | 1.3E-103 | – | |
| ProSiteProfiles | 49 | 83 | 35 | 9.01 | ||
| Pfam | 52 | 81 | 30 | 0.0051 | ||
| TIGRFAM | 52 | 84 | 33 | 3.5E-4 | ||
| ProSiteProfiles | 84 | 118 | 35 | 6.665 | ||
| ProSiteProfiles | 119 | 153 | 35 | 10.095 | ||
| TIGRFAM | 122 | 154 | 33 | 9.7E-6 | ||
| Pfam | 122 | 151 | 30 | 0.012 | ||
| SUPERFAMILY | 126 | 259 | 134 | 1.86E-5 | – | |
| Gene3D | 128 | 288 | 161 | 5.7E-57 | ||
| ProSiteProfiles | 154 | 189 | 36 | 12.244 | ||
| Pfam | 154 | 203 | 50 | 2.4E-17 | ||
| TIGRFAM | 156 | 191 | 36 | 7.6E-9 | ||
| ProSiteProfiles | 190 | 224 | 35 | 14.82 | ||
| TIGRFAM | 192 | 226 | 35 | 5.0E-12 | ||
| Pfam | 224 | 273 | 50 | 4.3E-21 | ||
| ProSiteProfiles | 225 | 259 | 35 | 13.581 | ||
| TIGRFAM | 227 | 261 | 35 | 1.7E-10 | ||
| ProSiteProfiles | 260 | 294 | 35 | 11.235 | ||
| TIGRFAM | 262 | 295 | 34 | 4.9E-6 | ||
| PANTHER | 271 | 473 | 203 | 1.3E-103 | – | |
| Gene3D | 289 | 359 | 71 | 2.4E-18 | ||
| Pfam | 294 | 323 | 30 | 1.1E-12 | ||
| ProSiteProfiles | 295 | 329 | 35 | 13.954 | ||
| TIGRFAM | 297 | 331 | 35 | 3.2E-11 | ||
| ProSiteProfiles | 330 | 364 | 35 | 9.361 | ||
| TIGRFAM | 334 | 365 | 32 | 0.0021 | ||
| Gene3D | 361 | 478 | 118 | 5.2E-19 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.914 | ||
| Pfam | 403 | 434 | 32 | 1.1E-7 | ||
| ProSiteProfiles | 407 | 441 | 35 | 12.342 | ||
| TIGRFAM | 410 | 442 | 33 | 1.3E-10 | ||
| ProSiteProfiles | 442 | 477 | 36 | 6.16 | ||
| Coils | 460 | 479 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0328000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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