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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0328400 |
| Transcript ID | LotjaGi6g1v0328400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ; TAIR: AT2G20560.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13; TrEMBL-Plants: tr|A0A067JNB8|A0A067JNB8_JATCU Uncharacterized protein; Found in the gene: LotjaGi6g1v0328400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64345177..64347262) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGTGGATTACTACAAGATTTTGCAGGTTGGCAAGAACGCCACCGATGATGAGTTGAAGAAAGCTTACAGAAAGCT TGCCATGAAATGGCACCCTGATAAGAACCCCACCAATAAGAAAGACGCTGAGACTAAATTCAAACAGATTTCTGAAGCCT ACGAGGTACCACCTACTATCCTTAAATCTATTGTTTTCCTCTGTTTAGAAATTCACAGATACATGTAATATTGTAATGTA ACATTTCTAGGTGATTAATATATATAGATTCTGATTTGGTGTATGTGTTGGTTTGGTGAAGGTTCTAAGTGATCCTCAGA AGAAAGCAATTTATGATCAGTATGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCAGATGCTGCTGGTGCTGGTGGG ACCTCATTCTTCCAAACTGGAGATGGACCAACAACGTTCAGGTTCAATCCCAGAAATGCAGATGACATCTTTGCCGAGTT TTTCGGGTTTTCAAGCCCGTTTGGAGGCATGGGTGGTGGTGGTGGAATGAGGGGTGGGTCTAGGTCCTTTGGTGGAATGT TTGGTGATGACATGTTCAGTTCATTTGGAGAAGGAAGGCCTATGAGTGCACAGGGTCCTCGCAAGGCACCTGCAATAGAA AATAGAGTGCCTTGTAGCCTTGAGGAGCTATATAAGGGGACTACCAAAAAGATGAAGATCTCAAGGGAGATTGCTGATGC AAGCGGGTAAGCACCACTCTGCTTTTCCATCTACTACAATGAAGCAAAGTATGAAAATATATAACTGATTACTCTGATAT AATTATGTGTTCAGTCTTGAGTTTAATTTAGGTGTTTTTCCTAGGCTGATTGAGTTCTGTGTTCAGAAGCCCCAAATCGT AGCTAGTTTTGTTTAATTTAGATATAATTTTGTTTTTTGAAGTCTATTAGTATTAGATTTGTGACCACTCAAATGGATTG CTAGTAGATTTCCGGTCCTGCAAAACTTCACGCTTCCTGCTTTGGAGTGAGGAGTGTGTTAGGAAGGTTCACATTAAATA AGAGACATGACCAACCAATAAGTTTAGAGCAATTATCACCGCAAAGCTAACTTTTACTGTAGTTCTAATAGCATATTAGA ATCTATCGTGGATCCGCCTAGGATAGTGTTAGACCTACCCTGAATTTCTACTATGCTAGAAATCTTTTCATGTAATGGAG CAAAAACTTGTTCTTCCTTTAGTTAGCTATTGAGATTTTGGGTAGAGCTGGACTTAACCTGAATTCAAATATGGTATATT AGCCTATCCTAGATACTTTTAGCCACCATCAGATGTCAAGACGATATGGCCTAGTAAGCGTATAGCAACCATCATCTCAA AGGTTGCTTTTGGGATATAGTGAATTTCAATATATTATCAGCTTCTTTCCTAAATTCACCTAGGTGTAGAGTTAGGCCTG AAGTGAATTTCTAGTAGTCATGAAAATTTTCTCATGTAATGAAGCAAAAGCTTGTTCTTCCAATCATTACTTTATCATTA AATGCAGCTATACTGATAAAATCTCTCTGCCTTTTTATTGCTTGCAGGAAAACTTTGCCTGTGGAGGAAATCCTAACCAT TGACATCAAACCCGGGTGGAAAAAGGGGACAAAGATCACGTTCCCAGAGAAAGGAAATGAGCAGCCAAACATGATTGCTG CGGATCTTGTGTTTGTTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTCACACAAAGA GTATCACTGGCTGAAGCTCTAGCAGGCTACACTGTCCATCTCACAACACTGGATGGCAGGGCTCTGAGCATTCCCATAAA CAATGTGATTCATCCAAGCTATGAAGAGGTGGTCCCCAGGGAAGGCATGCCTATTCCAAAAGATCCTTCAAAGAAGGGTA ATCTCAGGATCAAATTCAACATCAAATTCCCAGCGAGGTTGACCTCAGAGCAGAAAGCTGGAATTAAGAAACTTCTGGCG CCATAATAGTCTATGCTCTCTCATTATTATTTTGTGTAGTTTGTGCAATGAGTTAGTTGAGGTGTGACATTTTGAATTAA GGTTGA
CDS sequence (LotjaGi6g1v0328400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGGATTACTACAAGATTTTGCAGGTTGGCAAGAACGCCACCGATGATGAGTTGAAGAAAGCTTACAGAAAGCT TGCCATGAAATGGCACCCTGATAAGAACCCCACCAATAAGAAAGACGCTGAGACTAAATTCAAACAGATTTCTGAAGCCT ACGAGGTTCTAAGTGATCCTCAGAAGAAAGCAATTTATGATCAGTATGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCT CCAGATGCTGCTGGTGCTGGTGGGACCTCATTCTTCCAAACTGGAGATGGACCAACAACGTTCAGGTTCAATCCCAGAAA TGCAGATGACATCTTTGCCGAGTTTTTCGGGTTTTCAAGCCCGTTTGGAGGCATGGGTGGTGGTGGTGGAATGAGGGGTG GGTCTAGGTCCTTTGGTGGAATGTTTGGTGATGACATGTTCAGTTCATTTGGAGAAGGAAGGCCTATGAGTGCACAGGGT CCTCGCAAGGCACCTGCAATAGAAAATAGAGTGCCTTGTAGCCTTGAGGAGCTATATAAGGGGACTACCAAAAAGATGAA GATCTCAAGGGAGATTGCTGATGCAAGCGGGAAAACTTTGCCTGTGGAGGAAATCCTAACCATTGACATCAAACCCGGGT GGAAAAAGGGGACAAAGATCACGTTCCCAGAGAAAGGAAATGAGCAGCCAAACATGATTGCTGCGGATCTTGTGTTTGTT ATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTCACACAAAGAGTATCACTGGCTGAAGC TCTAGCAGGCTACACTGTCCATCTCACAACACTGGATGGCAGGGCTCTGAGCATTCCCATAAACAATGTGATTCATCCAA GCTATGAAGAGGTGGTCCCCAGGGAAGGCATGCCTATTCCAAAAGATCCTTCAAAGAAGGGTAATCTCAGGATCAAATTC AACATCAAATTCCCAGCGAGGTTGACCTCAGAGCAGAAAGCTGGAATTAAGAAACTTCTGGCGCCATAA
Protein sequence (LotjaGi6g1v0328400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVDYYKILQVGKNATDDELKKAYRKLAMKWHPDKNPTNKKDAETKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPP PDAAGAGGTSFFQTGDGPTTFRFNPRNADDIFAEFFGFSSPFGGMGGGGGMRGGSRSFGGMFGDDMFSSFGEGRPMSAQG PRKAPAIENRVPCSLEELYKGTTKKMKISREIADASGKTLPVEEILTIDIKPGWKKGTKITFPEKGNEQPNMIAADLVFV IDEKPHSVFTRDGNDLVVTQRVSLAEALAGYTVHLTTLDGRALSIPINNVIHPSYEEVVPREGMPIPKDPSKKGNLRIKF NIKFPARLTSEQKAGIKKLLAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 8.0E-178 | – | |
| PANTHER | 1 | 340 | 340 | 8.0E-178 | – | |
| Gene3D | 2 | 131 | 130 | 5.2E-36 | ||
| SUPERFAMILY | 3 | 131 | 129 | 1.44E-31 | ||
| SMART | 3 | 62 | 60 | 5.6E-33 | ||
| Pfam | 4 | 67 | 64 | 2.6E-28 | ||
| ProSiteProfiles | 4 | 70 | 67 | 24.769 | ||
| CDD | 4 | 59 | 56 | 1.21608E-26 | ||
| PRINTS | 6 | 24 | 19 | 2.9E-29 | ||
| PRINTS | 24 | 39 | 16 | 2.9E-29 | ||
| PRINTS | 42 | 62 | 21 | 2.9E-29 | ||
| ProSitePatterns | 47 | 66 | 20 | - | ||
| PRINTS | 62 | 81 | 20 | 2.9E-29 | ||
| SUPERFAMILY | 161 | 255 | 95 | 7.72E-17 | ||
| Gene3D | 165 | 245 | 81 | 3.5E-31 | – | |
| Pfam | 167 | 325 | 159 | 5.3E-42 | ||
| CDD | 167 | 328 | 162 | 2.81102E-48 | – | |
| Gene3D | 246 | 325 | 80 | 1.8E-26 | – | |
| SUPERFAMILY | 248 | 334 | 87 | 4.06E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi6g1v0328400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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