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LotjaGi6g1v0329400.2

Overview

Field Value
Gene ID LotjaGi6g1v0329400
Transcript ID LotjaGi6g1v0329400.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Leucine-rich repeat receptor-like protein kinase; TAIR: AT1G28340.1 receptor like protein 4; Swiss-Prot: sp|C0LGG4|Y1518_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51860; TrEMBL-Plants: tr|A0A0R0G6Z8|A0A0R0G6Z8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0329400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64425425..64430236) extracted from Lotus japonicus Gifu genome v1.2.

TTTCCATAAATTTGAGATGTTTTTGTTTTTTGAAACTTTATTCACAATTGACTTGGACCAAAATTTATGCAACTTTGTAT TCATTGCAGGGCCATTTGCTATGCGTATAAACTGTGGGGCTCGTCAAAATGTTCAAACAAAACCAACCACAACCCTTTGG TATAAAGACTTTGGATATACAGGCGGCATCCCTGCCAACGCGTCTACAACAAGTTACATCGCCCCTCCTCTCAAAACTCT TCGCTATTTCCCCTTGTCTGGAGGTCCTTCAAATTGCTACAACATTCATCAAGTGCCAAAGGGGCACTACTCAGTCAGGG TCTTTTTTGGACTTGTTGCTCATGCTAGAACTACTGATGAACCTCTATTCGACATCTCAATTCAAGGCACTCAAATATAT TCCTTGAAATCAGGTTGGACTAATCAGGATGATCAAGCATTTACTGAAGCCCAAGTGTTTCTTATGGATCGTTCTGTCTC AATCTGTTTTCATAGCACTGGTCATGGAGATCCAGCAATTCTTTCAATCGAGATTCTTCAAATCGATGACAAAGCTTATT ATTCTGGATCACAGTGGAGCCAAGGGACAATACTTAGAACAGTTAAAAGGCTGAGTTGTGGTTTTGGGCAGTCAAAATTT GGTGAGGATTATGGTGCATATCCTCTAGGAGGGGACAGATTTTGGCAGCATATTAAGACTTTTGATCAGGGCTCTGATCG ACCTAGATCTGTTGAAACTAGAATAAAAAAGACTTCGCTTGCACCAAACTTCTATCCAGAAACTCTTTATCGATCAGCAC TTATTAGTACTAGTAGCCAGCCTGATTTAACATATACATTGGATGTGGATCCCAGTAAAAACTATTCTATTTGGTTACAT TTTGCTGAGATTGATAATTCAGTGACTTCCACAGGACAAAGGGTCTTCGATATTATGATAAATGGTGATGTTGCTTTTAA AGATGTTGACATTGTGGAATTGAGTGGGGATCGTTATACTGCCCTTGTGCTTAATAAAACTGTTACTGTTAATGGGAGGA CATTGACAATAACTTTGAGGCCGAAAGAAGGAAGTCTTGCCATAATCAATGCAATAGAGATATTGGAAGTTATAATGGCT GAGTCAAAAACTTTATCAGATGAAGGTACATATGCCAACTCCTAATTTTGTTTTTGGAGTACACCCTTTGACCTGTTAAC ACACCTCAAGATAATCTAATTGGGGTCTGTGGCTCATTCTAAATACAAATTAAATTGGTTTCGACCAAATTATGTGTTAT TAGCCTGTTATTTGCTACTTTTAAATGCAGTGTCGTACTTCTTTGGTCTCTGTCTTGTCATATTGTCTTTAGCGGATTGC TCTTGTTGTTCTTTCTTCCTCTTCCTTTCAGCGATGACATTCAAGCTTAATAGTATTGATTGGTTACTCTATTTTTACTT TTACGTCTTCTCTAATTTTATATACTATTAGTGGTATCAAATGTGATTTCCTGTAATCCAAATGCATGTTAATTTTTGCT AGTTAATCGTTGTTCTTTTACTCTAGTTAAGGCCTTACAAACATTGAAGAAGGCTTTGGGGCTTCCTCCTAGGTTTGGGT GGAATGGTGATCCTTGTGTTCCTCAACAACATCCATGGACTGGAGCAGATTGTCAATTAGACAAAAGTAGTGGCAGTTGG GTCATTGATGGACTGTAATTTCTTATTACCCTTATTCTCAGGCTGTTATTGTACATTTGATTGTGTGGTGACATTATACC TGCATTTTTATTTCTCAATATTTTCTTTTTGTACCAAAACCAAGAATCAAAACTTTGTTTTTTCAGCATCAAAGCCTCTA AATCAGCAAAATTGAATCCCACCGACCCCCCCCCCCCTCAAAGCGAAAAAAAGGTACTGACCAATGAAACTTACTTTCAA ACTGATCAGCCGAACTTGTTTTCCAAATTTGTTTCATTCACTCATTTGGGAAGTTCACGTTTTGTATGCTCAAATCAACC ATTTTGTGCCCATTATTTGAGGAAGTAGCGCTTATATTGGCCCTCCCCTTTCTTAACATTTCTCTGGACCCTGTTTGCAT CAAAAGAAAATTCTCTCCATCTGCACTTAGCAAGGAAATTAATACTTACCACTAGGGTGAAAAGCATTTGTTTTGCATCG GAAGCTGTATTAAATATTAAATTATAATAACTTGCTTACTTGTTGCTGTATCTGTTGATGAGCAGTGGTCTTGACAATCA AGGTCTGAAGGGTTACTTGCCAAAAGACATTTCCAGGCTGCATAATCTACAAATCCTGTAAGCCCTAAATACATTCCTTT CAGCCAAACATTGTCGTGGGATGGATGTACGAATTATGCTCAATATGTTGTTGATAATAAAATGGATTGTTAGGTCTAGG CCTTGATCAATATGTTGATACTTACCACTAGACCTAGGCATTGATCAAATAGCAAACTGCATGATTTGAATAATTTGTCT GACCTTTTAATTTTTTCTGTTCAATTCACTATTCCCTTAGAAATGTAAACGCTTACTTTCTTGCTCATTCCTTATGCTTA TTTTACTTGTACATTACAGAAACTTGAGTGGAAACAGCATTCGTGGAGCCATTCCATCTTCAATTGGAAAAATAACTAGC TTGCAAGTGCTGTAAGCGACTTCTTGCTCTTGCTCTTCTCAGTTCATATGGCTGATTGGTTCTGTTGTTTATATTTTCCA AGTTCATAAAATGTAGTACAATTCCAATATGAGATTCTCATATTCGGCACAACCACGCACGTTTGTTGAGAATTTATGTC AGCTCCAATCCTGATAGCAATTCTTCTGTGTGAACCAAGCCTTAGTTCTAAAGGAATAAGATAGTATGGGATCTTAAAAT TAAAGTAGCTGCAAGATCTCAGGAGCAAGATACGATGAACATGAAAAATGAACTTGTATTTGTAGTTTTTACAACTTATT TTGTTACTAATGAGTCTTCATTTTGCTGACTTACTCTTGCTGATCTCCTACATGGATTGTGATAGAAACCAATAAAACAG TTAACAGGAAGAGTAAAAGATGAGAGGAAATGGATTGATTTGATTAATGGAACAAGAAGAAAATACAGTAGTCACTGCTA CTCCAGAGCTAAGCTCCTATAGAGAAATCATGCTTCTCTATTCTCTATTACAATTAGCTAATTTCCAGGTGCCTCTCACT AGCTAACAGAATTCCCCTGATTCCCGTAACTAACTCTTCTTAGCATCTTTCCCTCACTCTGCCAGCTCACTCCCCTTCTA GGTGCTTCCTTTCTTTCCCCTTCTAACATACACACGCCACACCTTGGGCCTAGTATTAGTTATATCAGCCCATTCCTGAC TTGGGGGCCTATCAGATTAAAGCGTATCCTTTGTAACTATATATCATATTAAGTGTACCAAAAAAAAAAATCATATTAAG GCCTCAGAAATTAAGAACAAATGAACGAAAAGGGAATTTGATTAAGTAATATATTTTACTTATAGTTTATATATATATAT ATATGTGTGTGTGTGTGTGTGTGTGTATGGAATTAATAGCAATACAGTGATTAATCCATGTTGCAAAATCACTATTATTT GTAAAAGCTAAGGGCTAAATTTACATTAAAAAAGTTTGCAAAGAAAAGGAATCAGATACCTAAGATTCTAAACTAAAGGT TTATGTTTTAGGGTCAGCATTGCTTTCGTTCTCTATATTGAGAGGTCAGCCAATTTGCAAAATGCTTTATTTGTGTGTCA GTGGCTAGTAGTACTTCAATGACTCAGTTTCTTCATGCTTCGATTTAAATTACTTTAGATTAGCTTCACTGTGAGATTAC TGGAAGGTTTGAATCCTTTATTTGGCTGTCATGGTAATTTTTGAATGCCATGTACACATGCAGTGACCTGTCCTACAACT TATTCAATGGATCGATTCCTGAAAGCCTTGGACAATTGACATTGTTACAAAGACTGTAAGATTCCTTAATCTTTTAACTT GCGCAAGAAAAATAAGAAGACTAGAAGTTTCTATTAAAAAAGTCTTCATGCAGGAACCTTAATGGCAACTCTCTGTCTGG AAGGGTCCCAGCTACTCTAGGAGGAAGACTTCTGCACAGAGCTAGCTTCAAGTATGTTGCCAATATTAAACACTCGAATA AACCTAAAGTGAATTCATATCCAATTCGAGGAGAACCATATATCTTCATGCTGTTTCTCCCCTTTCTTTGGTATTAAGGT TTCTAAATCTACATTTCTGGATGTCTGCAGTTTTACCGATAATGCAGGTTTGTGTGGTATGCCCGGATTACGTACATGTG GAACTCATCTTTCTGCCAGTGCGAAAGTTGGTATTGGGTTAGGTGCTTCTATAACTTTTCTAGTTCTGATTACCGGTTCA GTTTGCTGCTGGAAAAGGAGACAGAATATCCTCCGGACTCAACAAATTGCAGGTGAGGATGTTAATATCTGTGGCTTGCT GTTATCTTAGTACTCTATTACTGGGTTGAGTTTATACCAGTTGCATTGCACTTGTACTTAAGTTATCAATCTAAACACAG TTGCATTGCATTCCACTTGTACTGGGTTGAATCAGGCAAAATTATGAAACACCCTCTGGTAACCTTGCTGCTAAGCATAG CTAACATAATCTTGGATGGAAATTTATACCTTAATTTTCTTTTGTAGCGAGGGCAGCTCCATATGCAAAAGCAAGGACTC ATTATTCACGTGACATCCAAATGACAAGGCATAATAATTATGGCAATACTCGCACTGCTGCGGAGAATGGGCCTATCTTG CTTACACAATAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0329400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTTGTTTTTTGAAACTTTATTCACAATTGACTTGGACCAAAATTTATGCAACTTTGTATTCATTGCAGGGCCATT TGCTATGCGTATAAACTGTGGGGCTCGTCAAAATGTTCAAACAAAACCAACCACAACCCTTTGGTATAAAGACTTTGGAT ATACAGGCGGCATCCCTGCCAACGCGTCTACAACAAGTTACATCGCCCCTCCTCTCAAAACTCTTCGCTATTTCCCCTTG TCTGGAGGTCCTTCAAATTGCTACAACATTCATCAAGTGCCAAAGGGGCACTACTCAGTCAGGGTCTTTTTTGGACTTGT TGCTCATGCTAGAACTACTGATGAACCTCTATTCGACATCTCAATTCAAGGCACTCAAATATATTCCTTGAAATCAGGTT GGACTAATCAGGATGATCAAGCATTTACTGAAGCCCAAGTGTTTCTTATGGATCGTTCTGTCTCAATCTGTTTTCATAGC ACTGGTCATGGAGATCCAGCAATTCTTTCAATCGAGATTCTTCAAATCGATGACAAAGCTTATTATTCTGGATCACAGTG GAGCCAAGGGACAATACTTAGAACAGTTAAAAGGCTGAGTTGTGGTTTTGGGCAGTCAAAATTTGGTGAGGATTATGGTG CATATCCTCTAGGAGGGGACAGATTTTGGCAGCATATTAAGACTTTTGATCAGGGCTCTGATCGACCTAGATCTGTTGAA ACTAGAATAAAAAAGACTTCGCTTGCACCAAACTTCTATCCAGAAACTCTTTATCGATCAGCACTTATTAGTACTAGTAG CCAGCCTGATTTAACATATACATTGGATGTGGATCCCAGTAAAAACTATTCTATTTGGTTACATTTTGCTGAGATTGATA ATTCAGTGACTTCCACAGGACAAAGGGTCTTCGATATTATGATAAATGGTGATGTTGCTTTTAAAGATGTTGACATTGTG GAATTGAGTGGGGATCGTTATACTGCCCTTGTGCTTAATAAAACTGTTACTGTTAATGGGAGGACATTGACAATAACTTT GAGGCCGAAAGAAGGAAGTCTTGCCATAATCAATGCAATAGAGATATTGGAAGTTATAATGGCTGAGTCAAAAACTTTAT CAGATGAAGTTAAGGCCTTACAAACATTGAAGAAGGCTTTGGGGCTTCCTCCTAGGTTTGGGTGGAATGGTGATCCTTGT GTTCCTCAACAACATCCATGGACTGGAGCAGATTGTCAATTAGACAAAAGTAGTGGCAGTTGGGTCATTGATGGACTTGG TCTTGACAATCAAGGTCTGAAGGGTTACTTGCCAAAAGACATTTCCAGGCTGCATAATCTACAAATCCTAAACTTGAGTG GAAACAGCATTCGTGGAGCCATTCCATCTTCAATTGGAAAAATAACTAGCTTGCAAGTGCTTTTTACCGATAATGCAGGT TTGTGTGGTATGCCCGGATTACGTACATGTGGAACTCATCTTTCTGCCAGTGCGAAAGTTGGTATTGGGTTAGGTGCTTC TATAACTTTTCTAGTTCTGATTACCGGTTCAGTTTGCTGCTGGAAAAGGAGACAGAATATCCTCCGGACTCAACAAATTG CAGCGAGGGCAGCTCCATATGCAAAAGCAAGGACTCATTATTCACGTGACATCCAAATGACAAGGCATAATAATTATGGC AATACTCGCACTGCTGCGGAGAATGGGCCTATCTTGCTTACACAATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0329400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFLFFETLFTIDLDQNLCNFVFIAGPFAMRINCGARQNVQTKPTTTLWYKDFGYTGGIPANASTTSYIAPPLKTLRYFPL SGGPSNCYNIHQVPKGHYSVRVFFGLVAHARTTDEPLFDISIQGTQIYSLKSGWTNQDDQAFTEAQVFLMDRSVSICFHS TGHGDPAILSIEILQIDDKAYYSGSQWSQGTILRTVKRLSCGFGQSKFGEDYGAYPLGGDRFWQHIKTFDQGSDRPRSVE TRIKKTSLAPNFYPETLYRSALISTSSQPDLTYTLDVDPSKNYSIWLHFAEIDNSVTSTGQRVFDIMINGDVAFKDVDIV ELSGDRYTALVLNKTVTVNGRTLTITLRPKEGSLAIINAIEILEVIMAESKTLSDEVKALQTLKKALGLPPRFGWNGDPC VPQQHPWTGADCQLDKSSGSWVIDGLGLDNQGLKGYLPKDISRLHNLQILNLSGNSIRGAIPSSIGKITSLQVLFTDNAG LCGMPGLRTCGTHLSASAKVGIGLGASITFLVLITGSVCCWKRRQNILRTQQIAARAAPYAKARTHYSRDIQMTRHNNYG NTRTAAENGPILLTQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 499 499 - –
PANTHER
PTHR46662:SF12
19 474 456 8.0E-286 –
PANTHER
PTHR46662
19 474 456 8.0E-286 –
Pfam
PF12819
31 365 335 1.1E-66
IPR024788
Gene3D
G3DSA:2.60.120.430
222 367 146 2.3E-17 –
Gene3D
G3DSA:3.80.10.10
373 495 123 2.2E-16
IPR032675
SUPERFAMILY
SSF52058
373 480 108 2.38E-12 –
PANTHER
PTHR46662
475 573 99 8.0E-286 –
PANTHER
PTHR46662:SF12
475 573 99 8.0E-286 –
Phobius
TRANSMEMBRANE
500 521 22 - –
TMHMM
TMhelix
502 521 20 - –
Phobius
CYTOPLASMIC_DOMAIN
522 575 54 - –
MobiDBLite
mobidb-lite
556 575 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0329400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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