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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0333400 |
| Transcript ID | LotjaGi6g1v0333400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sphingolipid delta-4 desaturase; TAIR: AT4G04930.1 fatty acid desaturase family protein; Swiss-Prot: sp|Q6H5U3|DES1L_ORYSJ Sphingolipid delta(4)-desaturase DES1-like; TrEMBL-Plants: tr|I3SQJ0|I3SQJ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64820434..64822288) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGGGACAAACAAATCATGACCAGTAAGAGAGAGTGAGGGTTGGATTGTCTTCTATTGTTAGGCATTTCAAATCTC AATCTCTGTATTAATATAACATTCTTCATTGCAATGCACATTGTGATGTGAGAGAGAGAGAGAGAGAGAGAGAAAATGGG TAGAGGCGGAGGAGGAGAAGATCGTGAAGGGGTCGTCATGGCTGGGGACTTCTTCTGGTCCTACACCGATGAACCTCACG CCTCACGACGCCGTCAGATCCTCTCCAAATACCCTCAAATCAAGCAACTCTTCGGCCCTGACCACTCCGCATTCTTCAAG GTTTCTTTCTTCTTGCATTTTTCTCTCATTCCTTCAATCTTGCACCTGTTTATGGCTTCTGGGTTGGGTTGGCATTCTCG TTCTTCATTGTTCATGTTATTATACATTACATGTTGCTTAGGTTGTGTGGCATTGTGGCTATTTGGATATTTATTTGCCT TTACATTCTTTACTTGTCTTTCTTTAGAATCAATTCTCATGAACCAGGACACTTTTAGGTGGGTTATATAAATGTTTGAC AATCACTTACAGAATTGATTTATGTCAATTTTGCTGACAAGCTAGAGAGAAGTAGCTTCTGTCTTAGACATAATCAATTT TGAGGTTTTATACCTGTATTTCATAACATTATCCTATAGAAATCACTTTTCCGATATGTATTCAAATATAAATCACTTTA CTTTCAACTCACTTTTACCATGACCGATTTTATCCAAAATCAACTTTAACAACGCTGATCCAAACACGCACTAGGGTCTT GCTAAATTAAAGGCCCATTCTTTTTGTCATACCTGGTTTGGAATAATAGCTGCAATATATTATATGGTTTTATAGTTTTA TTATAAACTGCTATTTTTTCCCAAAGATTTGTACATGATAATGAAGTAGATTAGGATAGGGATGGGAAATGCATTTTATG TGGATGTGCAAGTTTCTAGAAATCTGTTACTCCTATATAGGGTGTGTTAATGATCTTTGAAATTGTGTTGTTACAGATTA GTGGAGTTGTTTTGCTTCAGCTTGGTACTGCTACTCTACTTCAGGATGCAGGCTGGCTGAAGATACTACTAGTAGCCTAT TTTTTTGGCTCATTTCTCAACCACAATCTCTTCTTGGCTATCCATGAGCTCAGTCACAACCTAGCCTTCTCAACTCCGGC CTTAAACCGTTGGCTCGGTATTTTTGCTAACCTCCCCATAGGTGTGCCCATGTCTGTAACTTTCCAAAAGTATCACTTGG AGCACCACCGCTTCCAAGGTGTAGATGGTATTGATATGGATATCCCTAGCCTCGCCGAAGCACATGTCGTGACAAATGTT TTCGCAAAAACCATATGGGTCTTTTTACAGCTCTTCTTTTATGCCTTTAGACCACTGTTTCTCAAACCAAAGCCTCCTGG TATCTGGGAATTCATCAACTTTTCTGTTCAGATAGCACTTGACGTGGCCATGGTTTATTTCTGGGGATGGAAATCCCTTG CCTATCTCATACTCTCCACATTTGTTGGTGGAGGGATGCATCCAATGGCTGGTCACTTCATTTCAGAGCATTATGTCTTC AATCCTGACCAAGAGACATATTCATACTATGGACCTTTGAATCTTGTTACATGGCATGTGGGCTACCACAATGAACACCA TGATTTTCCTAGAATTCCTGGAAACAAGCTTCACAAGGTGAAGGAGATTGCTCCAGAGTACTATGATGAGTTAGCATCCT ATAAATCTTGGAGCCAGGTCATTTACATGTATCTTATGGATCGAACGGTTGGGCCTTTTAGCCGAATGAAGAGAAAGCCT GGCAAAACAGAGTAG
CDS sequence (LotjaGi6g1v0333400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAGGCGGAGGAGGAGAAGATCGTGAAGGGGTCGTCATGGCTGGGGACTTCTTCTGGTCCTACACCGATGAACC TCACGCCTCACGACGCCGTCAGATCCTCTCCAAATACCCTCAAATCAAGCAACTCTTCGGCCCTGACCACTCCGCATTCT TCAAGATTAGTGGAGTTGTTTTGCTTCAGCTTGGTACTGCTACTCTACTTCAGGATGCAGGCTGGCTGAAGATACTACTA GTAGCCTATTTTTTTGGCTCATTTCTCAACCACAATCTCTTCTTGGCTATCCATGAGCTCAGTCACAACCTAGCCTTCTC AACTCCGGCCTTAAACCGTTGGCTCGGTATTTTTGCTAACCTCCCCATAGGTGTGCCCATGTCTGTAACTTTCCAAAAGT ATCACTTGGAGCACCACCGCTTCCAAGGTGTAGATGGTATTGATATGGATATCCCTAGCCTCGCCGAAGCACATGTCGTG ACAAATGTTTTCGCAAAAACCATATGGGTCTTTTTACAGCTCTTCTTTTATGCCTTTAGACCACTGTTTCTCAAACCAAA GCCTCCTGGTATCTGGGAATTCATCAACTTTTCTGTTCAGATAGCACTTGACGTGGCCATGGTTTATTTCTGGGGATGGA AATCCCTTGCCTATCTCATACTCTCCACATTTGTTGGTGGAGGGATGCATCCAATGGCTGGTCACTTCATTTCAGAGCAT TATGTCTTCAATCCTGACCAAGAGACATATTCATACTATGGACCTTTGAATCTTGTTACATGGCATGTGGGCTACCACAA TGAACACCATGATTTTCCTAGAATTCCTGGAAACAAGCTTCACAAGGTGAAGGAGATTGCTCCAGAGTACTATGATGAGT TAGCATCCTATAAATCTTGGAGCCAGGTCATTTACATGTATCTTATGGATCGAACGGTTGGGCCTTTTAGCCGAATGAAG AGAAAGCCTGGCAAAACAGAGTAG
Protein sequence (LotjaGi6g1v0333400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGGGGEDREGVVMAGDFFWSYTDEPHASRRRQILSKYPQIKQLFGPDHSAFFKISGVVLLQLGTATLLQDAGWLKILL VAYFFGSFLNHNLFLAIHELSHNLAFSTPALNRWLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLAEAHVV TNVFAKTIWVFLQLFFYAFRPLFLKPKPPGIWEFINFSVQIALDVAMVYFWGWKSLAYLILSTFVGGGMHPMAGHFISEH YVFNPDQETYSYYGPLNLVTWHVGYHNEHHDFPRIPGNKLHKVKEIAPEYYDELASYKSWSQVIYMYLMDRTVGPFSRMK RKPGKTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| PIRSF | 7 | 327 | 321 | 5.1E-151 | ||
| PANTHER | 8 | 325 | 318 | 3.8E-204 | – | |
| PANTHER | 8 | 325 | 318 | 3.8E-204 | – | |
| SMART | 14 | 52 | 39 | 9.0E-20 | ||
| Pfam | 17 | 50 | 34 | 2.0E-19 | ||
| CDD | 35 | 322 | 288 | 1.20665E-170 | ||
| Phobius | 52 | 70 | 19 | - | – | |
| Phobius | 71 | 75 | 5 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Pfam | 74 | 297 | 224 | 2.6E-23 | ||
| Phobius | 76 | 98 | 23 | - | – | |
| Phobius | 99 | 109 | 11 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 110 | 131 | 22 | - | – | |
| Phobius | 132 | 158 | 27 | - | – | |
| Phobius | 159 | 179 | 21 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 180 | 190 | 11 | - | – | |
| Phobius | 191 | 211 | 21 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 212 | 216 | 5 | - | – | |
| Phobius | 217 | 237 | 21 | - | – | |
| Phobius | 238 | 327 | 90 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sphingolipid biosynthetic process | The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). | ||
| Molecular function | Sphingolipid delta-4 desaturase activity | Catalysis of the introduction of a trans double bond between C4 and C5 of the long chain base region of a sphingolipid. Sphingolipids are composed of a long chain base (LCB) amide-linked to a very long chain fatty acid. |
Expression pattern of LotjaGi6g1v0333400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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