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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0334500 |
| Transcript ID | LotjaGi6g1v0334500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|P18479|POLG_ZYMVC Genome polyprotein; TrEMBL-Plants: tr|Q3C0I0|Q3C0I0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0334500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64912693..64916242) extracted from Lotus japonicus Gifu genome v1.2.
GGATGTTACAGATGTTTACTGTTAGCTGGGTTGTTAGTTTGTTAAGCTGAGTTGGTTAGTTTGTTAGACGGTTGGGGTTA GTATAAAGGGTGTTAACTAATCAATTGTAATCATGTTGAATAGTGAATAAACTTTCTCTCCTTCTCTCTGGTTTCTTTCT CTTTCTCTCTTCATCTCTTCTTCTTCTTCAACCTTCTGTCCTATCATTGGTATCTAGAGCCCTAAGATTCACGGAACCGC CATGGCTGAAGCAACAAGGTTTCAGAGTTCGATTCGTGAAGCGGAGGAGCGAATCATGGCAGCGATGGATCCTTGCATCG CCCGCCACATGCGTGAACTGGAACTTCGGTTCGAGACGCAATTCAATGGTTTCCAGGAAGCTATGCGTGGAATTGGTTTG CAGGTCACCGACTTGGCTTCTGCACGACGTAGCAGAACACCAGGCGATGGAGATCACAGGATGCCAACTCGCCTCACGAG GTTGGATTTTCCGAAATTCAGCAAGGACGATGTCGATTCTTGGATCGCTAAGTGCGAGAGGTTTTTTGCGTTGGATGGCA CTCCTGAAGGCGAGCGTGTCGCTGTTGCCAGTATCGCCATGGACGAGAGCTCGTTCAGGTGGTTTCAGGGATTGGAGCAA GGTACGGTGGGAAGAGTGACTTGGCCGGAGTTTGCGGCGGCGCTACGAACACGATTTGGGGTTGAATTTGAGTCGCCGAT GGAGGAGCTCAAACGATTGGTGCAACAGGGAAATCTTGAGGAATATCATGAAGCTTTTGACAATCTTGCATGTAGAACAG AGCTTTCTGAGTCGTTGAAGCTTCAGTGTTATCTTGGAGGCCTCAATCCTGAGCTATGTACTGGGGTGAAGATGTTTGGT CCTCGCACTCTGCTGGAAGCAATGAGAATTGCTAAATTGCAAGAGAGAAGTTTGGAATTGTTGCATAAGAAATCTAATTC AGTGACCAAAACCTACAGTAATTGGAGTGAAAGGAAGGGAGTAGCACCTGTAACAGTGGAGAAGAAGGCGATTGAGAGGA AAACTGTTGGGGAAAACAACCAGAAAGGTATTCTGGGCAAGCCAAATTACACATTCCAGAAGAAACTCACTCCTAAGGAG ATGGATGAACATCGTACTCAGAATCTGTGCTTCTTTTGCCATGAAAAGTACACTCCAGGGCATGATTGTCCCCAAAGAAA GAAGTCTCAGGTCTTCTTTATGGCAGTAGATGTTCTTGAGTCAGAAGAGCTTTTGGAGGAGGTGGAACAAGAATCTCGAC CTGAGGTAAATGTTCCTAAAGTCTCTCTTAATGCTTTGCATGGTGATTCAATTTCTTTAGATGCTTTGGATGGTGATTTA GAATATCCTATGATGAGATTGACTGGTTGGCTAGGCAAGAAGAGAATTTTTGTGTTGATAGATACAGGAAGTACACACAA TTTTATTAACCAAAAATTATGCCATGAGGGGTTGAGCAAGATTAAGTGTTTGCAACCAGTAAAAATAACAGTGGCAGATG GGGGAATCATACAAGGCACTGGTTGGTGTGAGGGAATTTCATGGAAAATGCAGGGTTACACTTTTACTGATAATGCAATT GCTATTCCTCTAAGTAGTTGTGACCTCATTTTGGGTATGCAATGGCTTAGACAAAGGGGCAAAATATCATGGGATTTCAA TACAGATGGGTCACTAAGTTGATGGGCTTGTCTTATGTGATTCAGTACAAAAGGGGTAAAGAGAATGTGGTGGCTGATGC TCTCTCTCGAGCTTCACATGGAGAGTTGTTGCAGCTCTCAGTTTCTTCCATTTCCTCATAATTATGGGGTTTACTCACTC AAGCTTATGCAGCTGATGAGGCTCTACAGCAGCTCATCTCTCAAGTCCTAGCCCAACCTCAACTGCATGCTCACTATTCT GTAGTGGATGGTTTCTTGTTTAGGAAACATAGGTTGATGATTCCTAATAATTCTCAAGTCAGAACATTGATTTTGGAATG GCTGCATTCTTCTCATCAGGGTGGGCACTCTGGTATAAGGGCTACTGTTGTTAGGATTAAGTCCTTATTTTTCTGGAAAT GACTCAGTAAGGATGTTGCTGATTTTATCCAAAAGTGTGAGACTTGTCTTAGGTGTAAGTATGAGAGAGTTGCTAGTCCA GGTTTACTTCAACCACTCCCCATACCTGCTGGTGTTTGGCAGAGCATTGCTATGGACTTTATTGACAAATTGCCTAAGTC TCATGGAAAGGATGCTATCTGGGTTGTCATTGATAGGTTGAGCAAGTATGCTCACTTCATTCCCCTCACTCATCCTTATA CAGCTTCTACTTTGGCTGAGATTTTCATCAAAGAGGTTTATAGGCTTCATGGTGCTCCCTCCAACATTGTCAGTGATAGG GACCCTCTGTTTACCAGTACATTTTGGACTGCTTTCTTACAGCAGCTGGGCATTTCTCAAAGCCTCACCATTGCTTATCA CCCACAATCTGATGGTCAGAGTGAGGTTCTGAATAGGTGTTTAGAACATTACCTTAGAGCCATGACTTGGCAAAGACCTA AGGAATGGGTCACCTGGTTGCCACTAGCTGAGTGGTGGTATAACACCACTTATCATTCAGCTATCCAGACTACTCCCTAT GAGGTGGTGTATGGTCAGCCACCAGCAATCCATCTTCCTTATTGTCCTCAGAGCACTATTGTGGAAGCGGTGGACAGGAG CTTTACAGCTAGGGAGCAAATGATTCAGAAGCTTCATGCCAATCTCATGAGGGCTCAAGCCAGAATGAAAATACAGGCTG ACAAGCATAGAACAGATAGGGAATTTTCTGTGGGAGATTGGGTTTTGTTGAAACTCCAGCCTTATAGGCAGAGTTCCACT CAACACAGGGCTTCTGAAAAACTATCTCCACGATTTTTTGGACCCTATCAGGTGCTTCACCGTGTTGGCAAGGTTGCTTA CACTCTGGCCCTTCCCCCTGAGTCCAAGATCCATCCTACATTCCATGTTTCTCTGCTGAAGCCATGCCCTTCACCGGCTA TGCCACATGTACCACTTCCTTTAGAGTGGGGTAATTTGGATCAGCCAAAGGCTCCTTTTAAGATCCTCAAGAGACGAATG GTTCAGCGCAGGCACAAGGCAGTCACTGAGGTGCTGGTTCAGTGGCTAGGTGAAATGGAGGAAGAAGCTACTTGGGAGGT TCTGTATAACCTCAAACTGAAGTACCCTACATTTGATACTACTGTTGTTGTCCCTGAGAATTCTCGGGTTATTCCTTGAG GACAAGGAAATTGTTAAGGGGAGGGATATGTTACAGATGTTTACTGTTAGCTGAGTTGGTTAGTTTGTTAAGCTGAGTTG GTTAGTTTGTTAGACGGTTGGGGTTAGTATAAAGGGTGTTAACTAATCAATTGTAATCATGTTGAATAGTGAATAAACTT TCTCTCCTTCTCTCTGGTTTCTTTCTCTTTCTCTCTTCATCTCTTCTTCTTCTTCAACCTTCTGTCCTATCATGGGAGGA AGAACTAATTAGTCTATAGAACAAAGAAAG
CDS sequence (LotjaGi6g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGCAACAAGGTTTCAGAGTTCGATTCGTGAAGCGGAGGAGCGAATCATGGCAGCGATGGATCCTTGCATCGC CCGCCACATGCGTGAACTGGAACTTCGGTTCGAGACGCAATTCAATGGTTTCCAGGAAGCTATGCGTGGAATTGGTTTGC AGGTCACCGACTTGGCTTCTGCACGACGTAGCAGAACACCAGGCGATGGAGATCACAGGATGCCAACTCGCCTCACGAGG TTGGATTTTCCGAAATTCAGCAAGGACGATGTCGATTCTTGGATCGCTAAGTGCGAGAGGTTTTTTGCGTTGGATGGCAC TCCTGAAGGCGAGCGTGTCGCTGTTGCCAGTATCGCCATGGACGAGAGCTCGTTCAGGTGGTTTCAGGGATTGGAGCAAG GTACGGTGGGAAGAGTGACTTGGCCGGAGTTTGCGGCGGCGCTACGAACACGATTTGGGGTTGAATTTGAGTCGCCGATG GAGGAGCTCAAACGATTGGTGCAACAGGGAAATCTTGAGGAATATCATGAAGCTTTTGACAATCTTGCATGTAGAACAGA GCTTTCTGAGTCGTTGAAGCTTCAGTGTTATCTTGGAGGCCTCAATCCTGAGCTATGTACTGGGGTGAAGATGTTTGGTC CTCGCACTCTGCTGGAAGCAATGAGAATTGCTAAATTGCAAGAGAGAAGTTTGGAATTGTTGCATAAGAAATCTAATTCA GTGACCAAAACCTACAGTAATTGGAGTGAAAGGAAGGGAGTAGCACCTGTAACAGTGGAGAAGAAGGCGATTGAGAGGAA AACTGTTGGGGAAAACAACCAGAAAGGTATTCTGGGCAAGCCAAATTACACATTCCAGAAGAAACTCACTCCTAAGGAGA TGGATGAACATCGTACTCAGAATCTGTGCTTCTTTTGCCATGAAAAGTACACTCCAGGGCATGATTGTCCCCAAAGAAAG AAGTCTCAGGTCTTCTTTATGGCAGTAGATGTTCTTGAGTCAGAAGAGCTTTTGGAGGAGGTGGAACAAGAATCTCGACC TGAGGTAAATGTTCCTAAAGTCTCTCTTAATGCTTTGCATGGTGATTCAATTTCTTTAGATGCTTTGGATGGTGATTTAG AATATCCTATGATGAGATTGACTGGTTGGCTAGGCAAGAAGAGAATTTTTGTGTTGATAGATACAGGAAGTACACACAAT TTTATTAACCAAAAATTATGCCATGAGGGGTTGAGCAAGATTAAGTGTTTGCAACCAGTAAAAATAACAGTGGCAGATGG GGGAATCATACAAGGCACTGGTTGGTGTGAGGGAATTTCATGGAAAATGCAGGGTTACACTTTTACTGATAATGCAATTG CTATTCCTCTAAGTAGTTGTGACCTCATTTTGGGTATGCAATGGCTTAGACAAAGGGGCAAAATATCATGGGATTTCAAT ACAGATGGGTCACTAAGTTGA
Protein sequence (LotjaGi6g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEATRFQSSIREAEERIMAAMDPCIARHMRELELRFETQFNGFQEAMRGIGLQVTDLASARRSRTPGDGDHRMPTRLTR LDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVASIAMDESSFRWFQGLEQGTVGRVTWPEFAAALRTRFGVEFESPM EELKRLVQQGNLEEYHEAFDNLACRTELSESLKLQCYLGGLNPELCTGVKMFGPRTLLEAMRIAKLQERSLELLHKKSNS VTKTYSNWSERKGVAPVTVEKKAIERKTVGENNQKGILGKPNYTFQKKLTPKEMDEHRTQNLCFFCHEKYTPGHDCPQRK KSQVFFMAVDVLESEELLEEVEQESRPEVNVPKVSLNALHGDSISLDALDGDLEYPMMRLTGWLGKKRIFVLIDTGSTHN FINQKLCHEGLSKIKCLQPVKITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFN TDGSLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 475 | 425 | 7.1E-71 | – | |
| PANTHER | 51 | 475 | 425 | 7.1E-71 | – | |
| Pfam | 115 | 203 | 89 | 4.4E-9 | ||
| Gene3D | 377 | 483 | 107 | 5.1E-13 | ||
| SUPERFAMILY | 377 | 473 | 97 | 7.67E-9 | ||
| CDD | 380 | 470 | 91 | 7.4642E-24 | – | |
| Pfam | 390 | 471 | 82 | 2.4E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0334500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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