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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344100 |
| Transcript ID | LotjaGi6g1v0344100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G13150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150; TrEMBL-Plants: tr|F6I7G2|F6I7G2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0344100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65674432..65676354) extracted from Lotus japonicus Gifu genome v1.2.
TTACCACGTATACAAGCTTATTAGGATTTTCACCCCACCCGTTGAGCAGAGATGAAAGTCGGCCTTAGTGATCCAACAGT GCCAAATGGAAGGACCGTCGCTCAACGGATAAAAGTTACTCTAAGGATAACAGGATGATCTTCCCCAAGAGCTCACATCG ACGGAAAGGTTTGACACTTTAATGTTGGCTCTTCGCCACCTGGGGCTGAAGTATGTTCTAAGGGTTGGGTTGTTTGCCCA GTTATTGTATGAGGTCTATCTAATGCTATATGTGAAGGCGCATAATAGATTGATATGAACATAACCACTTAACAAGGAAA ATAACAAGACTACAAGAGGGACTAAAACCAGTAATTTGAATTTTAAGGGAATGAAAACCGATGAAACAATTTTACAGGGA CTATAAAAGTGGCAACCTCGTATATTACTCACTCGAAAAACCTCGTAGTTCTTCCAACACAAAAAACATGTCTGCCGCGA ATCATCTACGTCGAATCTTCAACGCGAAGCCCTCCATCAACGCCGCGACCTCCACCGTGTTCCGCCGCGGCAGTTACGAG ACACCGGAAGGCCTCCGAAGCGTCGTCGACAACTTCAAGGACCTATGCGAATGCAAGCAGTTTCGCCGCACGGCGAACAT GTACAGCGCCACCGTGCGTCGCCTCGTGAAGGCGCAGGCCTTCCCCATGATCGAAGAGATCCTCGAGCACCAGAAGAAGT ACGATGACATCTCCTCCGAAGGCTTCGTCATTCGCCTCATCTCCCTCTACGGCAAGGCCCGCATGTTCGATCATGCACGC GCACTGTTCGACGAAATGCCTTCCTTCAATACTCCCCGTTCCGCGAAGTCCCTCACCGCGCTTCTCAACGCTGCCATCAC CGCCAAGAGATACGACACCGTTCCGGAGCTTTTCCGCAAGCTGCATTCTCAGCAGTCCATTAAGGTTGATACGCCGGTGT ACAATGTCGTCGTTAATGCATATTGTAAGATGGGTTCTACCGATTCGGCTCTTTCGATGCTTCGCGAAATGGAGGAGTTG GGCCTGGAGCCGAATTTGTTCACTTTCAACACACTACTCCACGGGTTTTATCAGCAGCACGGGTTTGCGGAGGGTGAAAA AATTTGGTCCATGATGCAGGCGCGGGGCAATGTTAGTCCCGATGTGGTGAGCTATATGTTGAAGATGAAGGCTGTGATTG GTGATGGCGGAGTAACGGAAGCGGTTAAGGTAGTTGATGAGATGAGAGGCAATGGGGTTGAGCCAGATGTGCGTTTTTTC AGTTTGTTGATTGAGAGTTTCTGTCGGGATGGGAAAGTGGAAGAGGCTAAGTACTGGTATCATGAAATGGTGAGATGCGG ATGCGTCGCGGGTCCTGCAACTTATGGCGCTCTTGTTCCCTTTCTTTGTAAGAAGGGTGATTTTGACTTGGCTTTCAAGC TCTGCAAAGATGCAATTGGTGGTAGGAGTTTGCTTATTGGTGAAGGAGCGTTGAAGCGAGTGGTGGAGGCATTGGTTGCT GAGGGTAGGGTTGGAGAAGCTGAGAAACTTGTGGGTCTTGCAAGGAAGAAGAATTTGAAAATAGATTTAACTACCCCCTA ACCATGAGGTAGAACAGGACTAGTATGAAGTATCCTCCCTTTTTTGTAATTGTTGCTTTGAGATCACTGATTGTGACAAA ATTTAAGGTTGTTTCCTTCTTATGCAGATAATTAAGTGGGTTTGGATATCAATTAAGTGTTATATGATCGGGTTTTTATC CCAATAAGAGTTCTACTCACTTTTTATTTTGAACTGTGTGTGCGCTAACTTGATATCCATACATTACTTAATGTGTTAAT GTATGTAAGTTAAACCTTCTAGTAGTAGCCTTTGAATTTCATAATCTTTGATGTCTTTTCCTTAGCCTAAATTTCATTGC AAC
CDS sequence (LotjaGi6g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACAATTTTACAGGGACTATAAAAGTGGCAACCTCGTATATTACTCACTCGAAAAACCTCGTAGTTCTTCCAACAC AAAAAACATGTCTGCCGCGAATCATCTACGTCGAATCTTCAACGCGAAGCCCTCCATCAACGCCGCGACCTCCACCGTGT TCCGCCGCGGCAGTTACGAGACACCGGAAGGCCTCCGAAGCGTCGTCGACAACTTCAAGGACCTATGCGAATGCAAGCAG TTTCGCCGCACGGCGAACATGTACAGCGCCACCGTGCGTCGCCTCGTGAAGGCGCAGGCCTTCCCCATGATCGAAGAGAT CCTCGAGCACCAGAAGAAGTACGATGACATCTCCTCCGAAGGCTTCGTCATTCGCCTCATCTCCCTCTACGGCAAGGCCC GCATGTTCGATCATGCACGCGCACTGTTCGACGAAATGCCTTCCTTCAATACTCCCCGTTCCGCGAAGTCCCTCACCGCG CTTCTCAACGCTGCCATCACCGCCAAGAGATACGACACCGTTCCGGAGCTTTTCCGCAAGCTGCATTCTCAGCAGTCCAT TAAGGTTGATACGCCGGTGTACAATGTCGTCGTTAATGCATATTGTAAGATGGGTTCTACCGATTCGGCTCTTTCGATGC TTCGCGAAATGGAGGAGTTGGGCCTGGAGCCGAATTTGTTCACTTTCAACACACTACTCCACGGGTTTTATCAGCAGCAC GGGTTTGCGGAGGGTGAAAAAATTTGGTCCATGATGCAGGCGCGGGGCAATGTTAGTCCCGATGTGGTGAGCTATATGTT GAAGATGAAGGCTGTGATTGGTGATGGCGGAGTAACGGAAGCGGTTAAGGTAGTTGATGAGATGAGAGGCAATGGGGTTG AGCCAGATGTGCGTTTTTTCAGTTTGTTGATTGAGAGTTTCTGTCGGGATGGGAAAGTGGAAGAGGCTAAGTACTGGTAT CATGAAATGGTGAGATGCGGATGCGTCGCGGGTCCTGCAACTTATGGCGCTCTTGTTCCCTTTCTTTGTAAGAAGGGTGA TTTTGACTTGGCTTTCAAGCTCTGCAAAGATGCAATTGGTGGTAGGAGTTTGCTTATTGGTGAAGGAGCGTTGAAGCGAG TGGTGGAGGCATTGGTTGCTGAGGGTAGGGTTGGAGAAGCTGAGAAACTTGTGGGTCTTGCAAGGAAGAAGAATTTGAAA ATAGATTTAACTACCCCCTAA
Protein sequence (LotjaGi6g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQFYRDYKSGNLVYYSLEKPRSSSNTKNMSAANHLRRIFNAKPSINAATSTVFRRGSYETPEGLRSVVDNFKDLCECKQ FRRTANMYSATVRRLVKAQAFPMIEEILEHQKKYDDISSEGFVIRLISLYGKARMFDHARALFDEMPSFNTPRSAKSLTA LLNAAITAKRYDTVPELFRKLHSQQSIKVDTPVYNVVVNAYCKMGSTDSALSMLREMEELGLEPNLFTFNTLLHGFYQQH GFAEGEKIWSMMQARGNVSPDVVSYMLKMKAVIGDGGVTEAVKVVDEMRGNGVEPDVRFFSLLIESFCRDGKVEEAKYWY HEMVRCGCVAGPATYGALVPFLCKKGDFDLAFKLCKDAIGGRSLLIGEGALKRVVEALVAEGRVGEAEKLVGLARKKNLK IDLTTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 398 | 383 | 2.4E-114 | – | |
| PANTHER | 16 | 398 | 383 | 2.4E-114 | – | |
| ProSiteProfiles | 119 | 153 | 35 | 6.993 | ||
| Gene3D | 123 | 272 | 150 | 7.3E-31 | ||
| TIGRFAM | 126 | 149 | 24 | 2.7E-4 | ||
| Pfam | 126 | 149 | 24 | 0.001 | ||
| ProSiteProfiles | 154 | 184 | 31 | 5.393 | ||
| ProSiteProfiles | 190 | 224 | 35 | 13.241 | ||
| Pfam | 190 | 236 | 47 | 2.0E-12 | ||
| TIGRFAM | 193 | 225 | 33 | 1.3E-9 | ||
| ProSiteProfiles | 225 | 259 | 35 | 9.01 | ||
| ProSiteProfiles | 261 | 295 | 35 | 9.229 | ||
| Gene3D | 273 | 365 | 93 | 2.0E-17 | ||
| Pfam | 291 | 323 | 33 | 7.3E-8 | ||
| ProSiteProfiles | 296 | 330 | 35 | 11.104 | ||
| TIGRFAM | 300 | 329 | 30 | 5.3E-8 | ||
| ProSiteProfiles | 331 | 365 | 35 | 6.675 | ||
| ProSiteProfiles | 367 | 401 | 35 | 5.908 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0344100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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