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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0345300 |
| Transcript ID | LotjaGi6g1v0345300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related protein 1; TAIR: AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1; TrEMBL-Plants: tr|I3T2D3|I3T2D3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0345300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65792514..65793700) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGACATGCTCCATTCTCTCCCTATAAATACAATGAGCATATAACCTTCACTTTCATCCATTCTTCACCAAAAGAACC AAACAACAACAACCAAGAGCAAAAATGAGGTCCCTAATCCCACACCATGTGATGATGATCTTAGCCATTTTCTTCTTCAT GTCCTGCACCATTTCCCTAGCCCATGAAGTCTGCTCCCCAAAAGAGTTCCTTGACGTGCACAACCAAGCTCGCGCCGAGG TTGGTGTGGGTCCACTCTCATGGAACCACAACCTTGAAGCCTACGCTCAGAACTACGCTGACTTGAGGAGCCATGACTGC AACCTCGAGCACTCTAACGGGCCGTATGGTGAGAATATCGCTGAGGGTTACGGCGAAATGAAGGATGCAGATGCGGCAAA GCTCTGGTTCGCCGAAAAGCCCAACTACGACCCTCAGTCCAACTCGTGTGTCAATGATGAATGCTTGCATTATACACAGA TGGTTTGGCGCGATTCTGTTCATCTTGGGTGTGCTAAGTCCAAATGCAACAATGGCTGGGTTTTTGTTGTTTGCAACTAT GACCCACCAGGCAACTATGTTGGAGATAGACCTTATTGATTGGGTTGTGTACGTCCGATCAAGCTCTACAAATTAAATTT CGCGCATAAGAAGCATATTATAAATAATATATACTAAATGTTAGTAGTGAAAATGTGATTCTCAGGTGGATCGATCAAAT GGTCTGTATTAAGCAAGCTAGCTCTCCCAGCATATATGTTTGTGTATTGCCATTATGCGCTAGATTAGAAATTAGTCAAA TTACAATATGTGGATGTCGAGTGTGATATTCCCGTTATAATGAAAAAGAACTCATGCTAAAAGTTTGCTTTAGTGTGAAT TTATTATTACATTAAATATGTTATTTGGTGAATGGGAGTAAAAGTAAAACAGCTGATATGGTATATTGCTTCCAAAAGAA TGTTTAGTTGATGGTCATGATTTTGTAACGGTCATATGTATATTAAAGAACGCAATCAAGTGGTACAAAACTGGTTGTAT TCACAAGCACTGACTGGGCAAAGATTAATTGAATTTTAAGATGAAACAAAATGAATTTCAAAAGCAGCCAATTATATTTA TCCCCGGCCGGCTAGTTCGTTTTGTGCTGTATATAGCATTTTTGAACTAAAATTTTAAAATGCTTTC
CDS sequence (LotjaGi6g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTCCCTAATCCCACACCATGTGATGATGATCTTAGCCATTTTCTTCTTCATGTCCTGCACCATTTCCCTAGCCCA TGAAGTCTGCTCCCCAAAAGAGTTCCTTGACGTGCACAACCAAGCTCGCGCCGAGGTTGGTGTGGGTCCACTCTCATGGA ACCACAACCTTGAAGCCTACGCTCAGAACTACGCTGACTTGAGGAGCCATGACTGCAACCTCGAGCACTCTAACGGGCCG TATGGTGAGAATATCGCTGAGGGTTACGGCGAAATGAAGGATGCAGATGCGGCAAAGCTCTGGTTCGCCGAAAAGCCCAA CTACGACCCTCAGTCCAACTCGTGTGTCAATGATGAATGCTTGCATTATACACAGATGGTTTGGCGCGATTCTGTTCATC TTGGGTGTGCTAAGTCCAAATGCAACAATGGCTGGGTTTTTGTTGTTTGCAACTATGACCCACCAGGCAACTATGTTGGA GATAGACCTTATTGA
Protein sequence (LotjaGi6g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSLIPHHVMMILAIFFFMSCTISLAHEVCSPKEFLDVHNQARAEVGVGPLSWNHNLEAYAQNYADLRSHDCNLEHSNGP YGENIAEGYGEMKDADAAKLWFAEKPNYDPQSNSCVNDECLHYTQMVWRDSVHLGCAKSKCNNGWVFVVCNYDPPGNYVG DRPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| ProSiteProfiles | 1 | 21 | 21 | 5.0 | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| PANTHER | 9 | 164 | 156 | 7.3E-74 | – | |
| PANTHER | 9 | 164 | 156 | 7.3E-74 | ||
| Phobius | 12 | 21 | 10 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 164 | 138 | - | – | |
| Gene3D | 30 | 164 | 135 | 1.1E-44 | ||
| SMART | 30 | 160 | 131 | 1.7E-57 | ||
| CDD | 32 | 164 | 133 | 1.11306E-80 | – | |
| SUPERFAMILY | 33 | 164 | 132 | 9.94E-48 | ||
| Pfam | 36 | 152 | 117 | 3.5E-23 | ||
| PRINTS | 51 | 69 | 19 | 6.7E-17 | ||
| PRINTS | 97 | 110 | 14 | 6.7E-17 | ||
| PRINTS | 120 | 136 | 17 | 6.7E-17 | ||
| PRINTS | 147 | 160 | 14 | 6.7E-17 | ||
| ProSitePatterns | 147 | 158 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of LotjaGi6g1v0345300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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