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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0353100 |
| Transcript ID | LotjaGi6g1v0353100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|A0A0B2RFZ1|A0A0B2RFZ1_GLYSO Putative pumilio like 7, chloroplastic; Found in the gene: LotjaGi6g1v0353100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66549043..66554501) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAATTTGGAGGGTCTGTCTCTCACCTCCTCTCCTCTCCTCTCCACTCCTCCTTGTCTCTTGTTACGATCCGTGCAGT CCTCCAGTCCAGATTATATCTGTAACCGAAAATTCCCCCAACAAAATATTTTATATCCCACATTTCCACGCGCAACACCC TCATCGAAACTCCACGACCCCTCTCATCACTGAGCGTGCTTAACACGCTTCATCAATGCATCTCATTCACCATCTTGACC AAACCATTATTATATTATTATTCTGAAAAGCTTTAATGGCATGGCGTGTGAGGACAACATAACACTACGGTACACTCTCT CTGTGTAACCGTATGTATGTATGTATGTATGTATGTATGTATGTGAATAATGAATCTCTTCAATCTTTGCATGCCTTACC AACTCTCTCAAATGCAAATGCGATTTCATTTCAGTCACCCAAATCATCAATCTCTCTTTCTAGTTTGTCCTATTTAGCTA GCCTCTTTCGTTTTTGTTTTCTTCTGTTTGATGATGGAAAACGTGAAGGATGAAGGTGACCTTGAAATGTTGTTGGGTGA GATCCCTCACAATCTCCTTCATCTTTACGATCACCGCCAGTTTCTGCCCAAACAGCCGGTGAATGGCGGTGGTGTGTTTT ATGATGATGATCCATTAACTCAGATTAAGTTTTCCGGTGGTTCGTCTTTGCAATCTGATGGCTCTTCTTCGAGCTTGTTT TCCGGTGGCTATTCGTTTTCTGACACTGGATCACCAACGCCGCCTCCTCTGGAGGATTTTAAATCCACCACCGGTATCTC CTCCCATCACGGTAACAGTTTCTGGTTGGATTCTACTGTCACTGTGAGGGAGAAGGCTGGGGAGAGTTTGGTGGATGAAC TTGGCCTCTGTGCTAATTTGAGTAAAATGTGTATTAACAATCAACAACAACAGATGAACAAGAATCCGAATGTGTTTCCA TCATTCTGTGATTCTTCTTTGAGTGGGAATAATCTGATCAATGTTCATGTTCATAACAAACAACACAGGGATTTGGATTA TAACAGTTTCAGGAGAGGGGCTTTTGATTCTCTTGGATTTCAATCCCCTTTTCCGCGGAGTCCTAACAGCCTTGGCGCTG GCATGAATCCGGCATTATCAGGGTTAACCCAGGATTTTGAAATGGCTAATTTATTTGGATCATCACAACCATGTCCCGCG CGGTACGAGTACGACGCGGTGCTGTCTCAGTTAAATGGATTTAGTGGTGGTTCAATGGATTCTCCAAGGCACAGGAGGCA GATGATGAATCAGAATAACCACTATTGTAGAGGAAATTTGGCACCGGAGTTTGTTCCACCCTTGAGCAGAAATCCAATAG TTGATGATGCTTCAATTTATGATCAGAGAAATGGAGTTAATTTAATGGGAGAAAGAGGTGCTTCAGTTTTTGCTCAGAGA AATGGAGTTAATTTAATGGGAGAAAGGGGGGTGCCAAGATTGCCTAATTATTCTCATTGTACTAATTTTAGGCCTCATAT GAGTGTTCATGATTTACTGCAGCATGGTCCTCCTCTGTCGAATGCAAGAGTTGTGCCTCCTTGTAATGCTAGAATGATCC CGCAGGCGAATATAGATTCTATTTCGAGTGAGGGGAGCTTCATCATACAAGGTGAAGGTCTAAGTTATGTTGTAAACCGG GGTTCAGATCGTTCAAGGTGTTCGAATGCCGCGCGCCAAAATGGCTTTGCTAAGCATCTACAAAGGCCAGAGCTAGACAT CCAGCACCAGGCTTTCGGAGCCTATGAAAATCCGAGGAGTCCTAGGATTGATTCTCCATTCCCTTCGCTACCCAAGTATA ATTCCCTGGCAGAAGCTCGAGGGTGCGTGTATTTAATAGCCAAAGATCAGCATGGCTGTAGGTTCCTGCAAAGAGTGTTT GAGGAAGGTACACCGGAGGACGTTCAAGTGATATTTAATGAGATCATTGAGCATGTAGTGGAACTTATGATCAATCCTTT TGGAAATTACCTTATGCAAAAGTTGTTGGAAGTTTGTAATGAAGAACAGAGATTGCAGATTATACTCATGGTTACTCAGG AGCCAGGGCAACTTGTCAGAATCTCTTTGAACACTCATGGGTATGTAAGCAACTTATGCAATCTCATTTTAAATAGTATC TTGATGTTATGATGTTGAATTTGAAATCTCATTTTTTCTTCTGTCAGCACTCGAGTGGTACAGAAGCTGATTGAGACTCT CAAAACTAGGCAGCAAATTTCATTAGTGGTATCAGCTCTTGAACCAGGATTCTTGGCTCTCATCAAAGATCTTAATGGAA ATCACGTGGTTCAGCATTGTTTGCAATGCCTAAGCAATGGAGATAACAAGGTATAACTTCTATTTTCCAAGTATTTATAG ATTGGGATACTAATCCAACTTGTATGTTATTTATGGATGAAATTAAATCTGTGTGCCTAAATTGCTCTTGCTGCTTTGTT TTCATGAACTTTAACAAACTGATAATATAGTGTGCAAAAACATTTTTGTTTATCTCACATATTCCTTAAGAGTAATGCTG TACAATGATGTTCTAATCCCTGAAAATTTCATTTTATTGCTCCTTTATGGTTAAGCTTGCTTGTATTATTGAGAATTGCA AAATGTTCTTGGATCATTGGATGTATATTAGAAGACTTTCTAGTCGTTTTTGGATAGAATAGATGTCTCCAAGAAGCATT GTGGTTATGTGCCACATTTGACTGGTTAATATAACAGCTTGTCTAAGCCTTTTTTTGTTTACATGATCACTGTTTTGTTT TAATTTTCCTGCATATATAATGTCTATCTAATGAAAGATTGTGAACTCATCTTTCAGCTGTGGTCCTGTATGTAGAATCT TATTTTTTGAGAGAAGCGTATAGTCAGACTATGGCTGTTTAAACAAGTAGTAATGCCAAGTCCACTATCACAAATGGCAT TTTTGACACTTGATATTATAAACAGACATCATGGTATCTAATAAGCATATGGAATGATTTATTTATGATCACATAATGTA CGCTCTCCTTTTGTGCACAGAAGAGGTTGAGCTATAATATTAAATAATGCATTGTGCACATCACCATGTCAAATTGGCTG GAATTTTGTTGACTAAGAGTTAGTCTCAGCAAGTGTACTTTACCTAAGATAAACATATATAATGATTGTTATGTTTGTCT GTTAGAATTCAGTGCTTAAAGAATATATACACATTTTCCCATTGCTTAGTTTAAAAACTTCAGCTAACTTGATCCCAAAT GATCTGTACTTCCATTGTAAATTAACGCATCGAGGATCGTTAATTTGTATCAACATGTTCAATAGAGATTCATGAGACCA ATGAACCAATAGTGATTAGTTTGTGATGATCTAGATTCTTGGATAAAGGGCTTATGCATTGTGGTTGAAGTGGAGTCTAT TATGAGCTAGTTTAAAGCTAGGTGTATATTATGCTATGAAAGTTTGCATAGATTAAATGACAAAGTTCTTGCTCAATATA AGAAATGTTGTTACAGACATCCATGTTGCACATTTAAAGCTCTCTATGTAAACTGTATGGACGCAACTTTGATATGTTGT GGTAGAGAAGTGACATTTCCCTTTCTTTTTTTTGCATCGAGCAGTTTATATTTGTTGCTGCTGCTAAGTATTGTGCTGAG ATTGCAACTCATCAACACGGTTGTTGTGTTCTGCAAAAGTGTATTGGTCATTCAAGTGGGGAGCATAGAGAAAAGCTGGT TGGAGAAATATCTGCCAATGCACTTCTGCTAGCTCAAGATCAATACGGGTAATTATTTGAAACATATTACATGAAGTGTA AAGCAAATAAAATCTTGCAGATATATATTTTGCTTTAAGAATGCCTACTTTTTTCATCTACGAACATGGTTTTTCTTACC CAAAACAAGGTATCTCACATGTAGTGAATTGTCTCCTTTAATTGATAGAGAAACTTGTAACCTTTTGTACTGAACGGCCA GGCTTTGATGGGGACTACTTGAAGATATGTTTATGAAACATTCTTTTGCTTTACACCCTCTGAACATGACCACTCCACTT ACCAGACTGATGATGTATGCTGTGCAATTTTTCAAAAGAAAATGCAGTGTAGAATGGCTAGGGGAACAAACTCTTTAACA ATGATCATATTCTAATATGAAACTGAAATCCATGTATAATTATCACCGTTTTAATTCATGTATTTGTGGAATTTCTTAAA CAAGATGATGACTACAAAATGGCCAAGTGTTTTTTTGTTCACTTTGTACTATTACTCTTTTTTTTTTTTCATTTGTCTCT CTGGGATTTGTAGTTAACAACTAAGGTCTGGTTGATTGTTTTTATTGGAGGGACAATTTGACATTGATGTTTCTTTGTCA TATTTAAAAATCTTACTGTGCTTTATTTTTCCACCCTTTGATCTCTATTCTTTTTATCTTATGCAGAAATTATGTTGTTC AGTTCATCTTGGACTTAAGGATTCCATCTGCCACCTCAACTATAGTTTTGCTATTTGAAGGTAATTATGTGCACCTGGCA ATGCAGAAGTTCAGTAGCCATGTGGTCGAAAAATGCCTGTCTGTATTGGATGATGAGAGTCGGTCAAGAATCATTTACGA GCTGCTCTCTGCTCCTCACTTCGCACAGTTGCTTCAAGATCCTCATGCAAATTATGTTGTTCAATCAGCACTAAAACATT CCGAGGTTTTTGAGATGAACACTTCATATTACCTTTCTCTTCATATGCTGCTTCATATATTTGTTGATGTTCATAAATTT TTCTTTGCCGCGTCTTGTCAATTCGGTAGTTCATCCATGAACATTGTGATTCATTTGGTCTGCTTGGGATCTTAGTTTCT TTTTCTTGTCTCATGTTTGGCTTTTACTACTTAACTAGGGCGATGTGCATAATTCACTGGTTGAAGCAATCGAGTCCCAC AAAGCAATTTCACGAAATAGTCCCTATTCCAAAAAGATATTCTCGCAGAAGCTTTTGAAGAAATGATGTATATTCTTCCC TTAGAAAGAAGTGTTCATTTTGGGGCCTGCCACTGCAGTAAAAATGCATATCATGGTTATTTAACTATACAAAGGGGTCA ATCTTATCCATCTGCTCAGCTAATTTGGAAAAGGAGAGAAAAACAAGGAGCAGACAATTTTGTTGTCATTTATATTCTAG ACATGCGAATGTACTATTTTGTTGTCTTGTATCTCTACTTGTTGAATTTTATTATCCTGTTAATTATGATATTCTCACTG GCTGAGAATGTACAGTGTATAGTGCTTAGATGCTTGCTATTACTGTAAAATTACTACTAGGAATCTTTGATAATAATTTC CTATGTTCTTTGCACAAGGGAACCAATGACGCTGGTTCTTTAATGTATTTACTTTTACCAAGATTCCCTGTTTGTTCTTT GATTAGAATCTCATTTCTT
CDS sequence (LotjaGi6g1v0353100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAAACGTGAAGGATGAAGGTGACCTTGAAATGTTGTTGGGTGAGATCCCTCACAATCTCCTTCATCTTTACGA TCACCGCCAGTTTCTGCCCAAACAGCCGGTGAATGGCGGTGGTGTGTTTTATGATGATGATCCATTAACTCAGATTAAGT TTTCCGGTGGTTCGTCTTTGCAATCTGATGGCTCTTCTTCGAGCTTGTTTTCCGGTGGCTATTCGTTTTCTGACACTGGA TCACCAACGCCGCCTCCTCTGGAGGATTTTAAATCCACCACCGGTATCTCCTCCCATCACGGTAACAGTTTCTGGTTGGA TTCTACTGTCACTGTGAGGGAGAAGGCTGGGGAGAGTTTGGTGGATGAACTTGGCCTCTGTGCTAATTTGAGTAAAATGT GTATTAACAATCAACAACAACAGATGAACAAGAATCCGAATGTGTTTCCATCATTCTGTGATTCTTCTTTGAGTGGGAAT AATCTGATCAATGTTCATGTTCATAACAAACAACACAGGGATTTGGATTATAACAGTTTCAGGAGAGGGGCTTTTGATTC TCTTGGATTTCAATCCCCTTTTCCGCGGAGTCCTAACAGCCTTGGCGCTGGCATGAATCCGGCATTATCAGGGTTAACCC AGGATTTTGAAATGGCTAATTTATTTGGATCATCACAACCATGTCCCGCGCGGTACGAGTACGACGCGGTGCTGTCTCAG TTAAATGGATTTAGTGGTGGTTCAATGGATTCTCCAAGGCACAGGAGGCAGATGATGAATCAGAATAACCACTATTGTAG AGGAAATTTGGCACCGGAGTTTGTTCCACCCTTGAGCAGAAATCCAATAGTTGATGATGCTTCAATTTATGATCAGAGAA ATGGAGTTAATTTAATGGGAGAAAGAGGTGCTTCAGTTTTTGCTCAGAGAAATGGAGTTAATTTAATGGGAGAAAGGGGG GTGCCAAGATTGCCTAATTATTCTCATTGTACTAATTTTAGGCCTCATATGAGTGTTCATGATTTACTGCAGCATGGTCC TCCTCTGTCGAATGCAAGAGTTGTGCCTCCTTGTAATGCTAGAATGATCCCGCAGGCGAATATAGATTCTATTTCGAGTG AGGGGAGCTTCATCATACAAGGTGAAGGTCTAAGTTATGTTGTAAACCGGGGTTCAGATCGTTCAAGGTGTTCGAATGCC GCGCGCCAAAATGGCTTTGCTAAGCATCTACAAAGGCCAGAGCTAGACATCCAGCACCAGGCTTTCGGAGCCTATGAAAA TCCGAGGAGTCCTAGGATTGATTCTCCATTCCCTTCGCTACCCAAGTATAATTCCCTGGCAGAAGCTCGAGGGTGCGTGT ATTTAATAGCCAAAGATCAGCATGGCTGTAGGTTCCTGCAAAGAGTGTTTGAGGAAGGTACACCGGAGGACGTTCAAGTG ATATTTAATGAGATCATTGAGCATGTAGTGGAACTTATGATCAATCCTTTTGGAAATTACCTTATGCAAAAGTTGTTGGA AGTTTGTAATGAAGAACAGAGATTGCAGATTATACTCATGGTTACTCAGGAGCCAGGGCAACTTGTCAGAATCTCTTTGA ACACTCATGGCACTCGAGTGGTACAGAAGCTGATTGAGACTCTCAAAACTAGGCAGCAAATTTCATTAGTGGTATCAGCT CTTGAACCAGGATTCTTGGCTCTCATCAAAGATCTTAATGGAAATCACGTGGTTCAGCATTGTTTGCAATGCCTAAGCAA TGGAGATAACAAGTTTATATTTGTTGCTGCTGCTAAGTATTGTGCTGAGATTGCAACTCATCAACACGGTTGTTGTGTTC TGCAAAAGTGTATTGGTCATTCAAGTGGGGAGCATAGAGAAAAGCTGGTTGGAGAAATATCTGCCAATGCACTTCTGCTA GCTCAAGATCAATACGGAAATTATGTTGTTCAGTTCATCTTGGACTTAAGGATTCCATCTGCCACCTCAACTATAGTTTT GCTATTTGAAGGTAATTATGTGCACCTGGCAATGCAGAAGTTCAGTAGCCATGTGGTCGAAAAATGCCTGTCTGTATTGG ATGATGAGAGTCGGTCAAGAATCATTTACGAGCTGCTCTCTGCTCCTCACTTCGCACAGTTGCTTCAAGATCCTCATGCA AATTATGTTGTTCAATCAGCACTAAAACATTCCGAGGGCGATGTGCATAATTCACTGGTTGAAGCAATCGAGTCCCACAA AGCAATTTCACGAAATAGTCCCTATTCCAAAAAGATATTCTCGCAGAAGCTTTTGAAGAAATGA
Protein sequence (LotjaGi6g1v0353100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMENVKDEGDLEMLLGEIPHNLLHLYDHRQFLPKQPVNGGGVFYDDDPLTQIKFSGGSSLQSDGSSSSLFSGGYSFSDTG SPTPPPLEDFKSTTGISSHHGNSFWLDSTVTVREKAGESLVDELGLCANLSKMCINNQQQQMNKNPNVFPSFCDSSLSGN NLINVHVHNKQHRDLDYNSFRRGAFDSLGFQSPFPRSPNSLGAGMNPALSGLTQDFEMANLFGSSQPCPARYEYDAVLSQ LNGFSGGSMDSPRHRRQMMNQNNHYCRGNLAPEFVPPLSRNPIVDDASIYDQRNGVNLMGERGASVFAQRNGVNLMGERG VPRLPNYSHCTNFRPHMSVHDLLQHGPPLSNARVVPPCNARMIPQANIDSISSEGSFIIQGEGLSYVVNRGSDRSRCSNA ARQNGFAKHLQRPELDIQHQAFGAYENPRSPRIDSPFPSLPKYNSLAEARGCVYLIAKDQHGCRFLQRVFEEGTPEDVQV IFNEIIEHVVELMINPFGNYLMQKLLEVCNEEQRLQIILMVTQEPGQLVRISLNTHGTRVVQKLIETLKTRQQISLVVSA LEPGFLALIKDLNGNHVVQHCLQCLSNGDNKFIFVAAAKYCAEIATHQHGCCVLQKCIGHSSGEHREKLVGEISANALLL AQDQYGNYVVQFILDLRIPSATSTIVLLFEGNYVHLAMQKFSSHVVEKCLSVLDDESRSRIIYELLSAPHFAQLLQDPHA NYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 68 | 767 | 700 | 1.9E-218 | – | |
| PANTHER | 68 | 767 | 700 | 1.9E-218 | – | |
| MobiDBLite | 71 | 95 | 25 | - | – | |
| ProSiteProfiles | 425 | 767 | 343 | 84.932 | ||
| Gene3D | 440 | 767 | 328 | 5.4E-118 | ||
| SUPERFAMILY | 443 | 761 | 319 | 4.61E-102 | ||
| ProSiteProfiles | 448 | 483 | 36 | 8.944 | ||
| SMART | 448 | 483 | 36 | 1.1E-5 | ||
| CDD | 451 | 761 | 311 | 6.79317E-139 | ||
| Pfam | 456 | 480 | 25 | 1.0E-4 | ||
| Pfam | 484 | 518 | 35 | 1.7E-10 | ||
| SMART | 484 | 519 | 36 | 1.8E-9 | ||
| ProSiteProfiles | 484 | 520 | 37 | 12.047 | ||
| SMART | 523 | 558 | 36 | 0.014 | ||
| ProSiteProfiles | 523 | 559 | 37 | 9.317 | ||
| Pfam | 528 | 554 | 27 | 3.7E-5 | ||
| ProSiteProfiles | 560 | 595 | 36 | 7.427 | ||
| SMART | 560 | 595 | 36 | 2.0E-4 | ||
| Pfam | 562 | 594 | 33 | 3.9E-5 | ||
| ProSiteProfiles | 596 | 631 | 36 | 8.361 | ||
| SMART | 596 | 631 | 36 | 2.0E-5 | ||
| Pfam | 600 | 624 | 25 | 3.0E-6 | ||
| ProSiteProfiles | 632 | 667 | 36 | 9.317 | ||
| SMART | 632 | 667 | 36 | 0.0014 | ||
| Pfam | 633 | 663 | 31 | 1.6E-5 | ||
| SMART | 668 | 703 | 36 | 0.0021 | ||
| ProSiteProfiles | 668 | 703 | 36 | 9.037 | ||
| ProSiteProfiles | 704 | 741 | 38 | 9.201 | ||
| SMART | 706 | 741 | 36 | 0.041 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0353100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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