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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0353900 |
| Transcript ID | LotjaGi6g1v0353900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G15820.1 light harvesting complex photosystem II subunit 6; Swiss-Prot: sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, chloroplastic; TrEMBL-Plants: tr|I3SMI3|I3SMI3_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi6g1v0353900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66592047..66597210) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAGGATAAAAAGACCAATGTGGAGTGGAATCGTGGTAAGGTATCCACGTGGTTGGAAGCAACATGGGATGAGGATGG AGATCCAATCCCTATTGGTCCGAAATCTATCCACGTTAGCTGAAACAATTTCTCTACAGATTTCATTGTCCTACTTGGCC TTCTATGAGTACCCCCTTAGATTCTCCCCCACTCCACATCCACACACACATTAAAATCACTCACTACAAGGCTTGCATTT GCCAAGTATACTTTGAAAGCAGCCTCTAGTTCCTTCTCAGTTCTCACTGTCTCTCCTGAAAGGTTTGTAGAGGGAAAAGT AAAGAGAGATGGCAGCTGCTGCAACATCTGGTGCTGTGTTAAATGGCCTAGGATCTTCCTTCTTGTGTGGAGGAAATAGG AGCCAAACCTTGCTGGCTTCTGCTGCTGGAGCCAAAGCTGGTGCTGCTGTTAGTCCTAAAAGACTTATTGTAGCTGCTGC TGCTGCTGCACCAAAGAAGTCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCGTCGACCCAGAATGGCTTGATGGAT CGTAAGTCCACCCATCTACTCATTTCCTCTCATTTTACTTTTATTACTTCTGCAAGTTTGGTTTCATGATTTGAACATTT GCACATAATTTAAGGCACTCATAAGCTAAGTGTGTGCATGGCTCCACTTTTAGGAGTCTTAAAGCAATTGTCATTTATCA GAATCATAAGAATATAAGATGTTTAGCACTTGACTGGAATCAATTCTACCAAGAAGCTAGAGTTAGTACCTTATGTGGTA GACATAATCAACTATGAGATTTTATAATTGGATTCTGCAACAATACCTTATAGAAATTGCTTTTCTTATAAATTTATTCA AACATAAATCACTTCACTCTGAACTTACTTTTACCACTCTCAACTCACTTTTACAGTAACCACTTTTGCCAAAATCAATT TTGACAACATCGATCAAAACAAACACTAAGACCACTAAGACTTGAAGCTTCTAACTAAAAGTGATTCTATAGCATTTTCC TGTAAACCAAATATGCTGCCTATGAGTTTCTCTTTCAGAATTTGACTCATTCTCTGTGATGTTTAAACTGCAGGCTACCT GGTGACTTTGGTTTTGACCCACTAGGCCTAGGAAAGGACCCAGCGTTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCA TGGAAGGTGGGCAATGGCTGCAGTTTTGGGCATCTTTGTTGGCCAAGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAG CTGACCCCAATGCAATTGCTCCTTTCTCCTTTGGTTCTCTTCTGGGCACCCAGTTGATTCTCATGGGGTGGGTAGAGAGC AAGAGATGGGTGGACTTCTTCAACCCAGATTCTCAGTCGGTGGAATGGGCCACTCCATGGTCTAAGACTGCTGAGAATTT CGCCAATTACACCGGTGATCAAGGCTACCCAGGTGGCAAATTCTTCGATCCATTGGCCTTAGCTGGCACTCTCCAAGATG GAGTTTACATTCCAGACAAGGAGAAGCTGGAAAGATTGAAACTTGCTGAGATCAAGCATGCCAGGCTTGCAATGTTGGCC ATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTAGGCTTGTAAACAAAACAATTCATGTA GATAATTGAATTTGAGTTGCTAGACAATGAAAATGAACCTTAGTTCTGTGTTACCCCATGAAAATTCCAATTCTATGCTT TGATATTGTATGTGAATACCTAGTGTTTGTAGTGTAATTTAGTCATAGTCTAAATACTTCATTTACCTTTCTTTCTCAAA CCAGGTGCTGTGAAAAATATATGTGAGTGAGACTTTATTTCTCAAATCAGGTGGTAAACCAGGTGGTGTGAAAGACTTGG TATGGTTGGATATTATTGGAGTGTTATGAACAAACTTTTAACTAAATCCAAACTTGTAGCTCAATACATATTCACTGTGC AAAATAATAACCAAACACACCCATATGAGTTGAAAAATATACATTTCATCATGTCCATGTATAGCATGTTTGGATGTTCC AAAATATGTTAGCTAGGAAGGTGCTTGTTGTAGTTTATGAATGACCGTGATTTTGAAGTAAAAACTTGGGTTGCAGACGT GCAACCAAACACTCTACTTATTGTAGCTTATGAATGACACGTACAACCAAACACTCTGTAGCTTATGAATGAACCAAACA CTACTTAGGAAGATTTTGATAGTTTCATGATTCTGCTCTCCTTGCTTATTCGCTCCCTATAGCCATCAAAAATTCACCCT CACACACAACTTCACCTCCAACATATGCCTTACCTTCCATCTTTGCTAGTTCAAAACTCTTTTGCAGCTTAGTAAGTGTC ATTCTCATAACTAAGGTATCTCCTGCAATCACGGGCTTACAAAATCTCACTTTGTCAATTCCTACAAAGAAGAAATTCTC ACGAGAACCTCCCCCTTCAGGCTGCAACATGACCAAAACACCAACTTGTGCCATTGCCTGCAACAAAAGACCTGTAATTC ATGTTCTCTTCTATAGCAGATCACCTTTGAAACCTTTTTTCTTTTTCTTCACTTTCTTAAATGCCAGGCATGAGATAGTT CCTGGTCAAATGGAACTCTTAAGGTTTCTTTTGTGCAAAAAGCATTTCTCCAACAACATAATTGTACTCCCTAAGACTCT CTCGCTAATTCCACTTCAAACCGAGGATTTTGTGATGGATAAATTTTCTGTCGGGAACTACCCATGTTGGTAATTTGTTT TTTAACTCATTTTTTTTTTGGTAAATTGATTTTTTTACATTATTTAAAAAAAACTGTTATATGAGAATCTCTCTTTTTTT TCCAGGCTATTGTTGTATAATCTCAATTTTTTTAGACACACAATCACAATCAACAAATGCGATGCACCTTATTTGTCTTT TCATGCTTTATACAGATAACCTTTCTTTCTTATATCTGCATTTTTATTATCTTTTTATATTATATTTACCACTTTCCAGG GGGAACCATGAAATGGAAAGCCGCTAGGTTTGTGTTTTCACCTTTAGTTCAAAATTATAAATTGCTTGTTACTTAGGTCC TATTGGTATTATTTCTGAACATATAGTAACCATTTGGCTTGTATGGTGCAAAAATTAGATAGAAGCGTCTTGGAGTCCTT TTAGTTGTACCCTACGGAGGAGTTTATTATGATCACCTAAAAACTTGTGTAAGGTTACACCATGCACTTTTGACCTATAG TAGCAGATTTTATTGATTTTTTTTTTAAATAAAAAAAAAACATATTTTTTAATTACAATAATAATAGCACTAATCACAAC ATATTTCTTAATCCCACCATCACCAACCTCTCTCCACTCCACCACCATCACCCAGAACCCACCCACCACCATCACCGCCA CCGGTGAACGGCGGTGAAGTCGCCGGAGAAGAACTGAGGGTTGGAACCTCTTCTCCTCGTGGTGGAGTTCGTTTCTTCAA AAGACAAAGGAATCGGCCGGAAAAGCCCTTTACAGGTGGCTGTGGCGGCGGCCGGCAGTGTCAAAACGACGATCTGACTT AGGGGTTTTGTTGCGGACGGCGAGGGGAGTATGATGGTGGTGGTGGTTTCTTCGTATGGCTCGTGGTTTGGCTGGGATCG GAAAGAGAAGGTTGCGGTGGTGATGGGTCTTTCATCTGCTTTGATCCAGATCTAGACTTCAAGTTCGCACCTTCCCCCTT TTTTCCGTTCCAAACCCTAATTATTCAACATGGTTTGTTCATCTCAATCTTTCATTCCTTTTTTTTTTTCTGTTCAATTT CAATTCTTCGATTTTTTATGGATTCTTTTGTTGTTTTAGGAAGATCGAAGGTTGCTGCAATGGAGGAATGGAGACTAGGT GAAGGAAAGGGGGTGGTGGAAAGGAGGAGGTGTGGAACAAACCCATGATGGGTTAGTTGAAATTAATTTGCTTAACCTAC AGAATCAATTTTTCTATCTGGTGTTTTGCAAGAGAGAAAACTAATGGGGGAGAGGAAAGTTTTGATTTTGATTTTGGTTT TTTGAATGGGTGGTGTTTCTTCTTCTTCAGCTACTGTCGCAGGGTTATTGTGGGAAAGATGATCTGGGTTGAAACTTTCG TTGAAGGAGCATTCATGGCTGCATGTCATTGCTTTGCTGGGTTTGAAGGGAAGGGATTTGGGGGATATGGAGCAACAAGT TCAGATCTAGTTGTCTCAACAAGTTCAGATCATGTCATTGCTTTGCTGGTTTAGGGTTTAGGGTTTAGATGAAGGGGGAG AGAGAAGAGGAACATATATATTTTTTTTTGGTACAGAAATAGATTAAGATTAAGATAAACGTTTTTTTTAATTAATTAAA GATAAATGTTTAATTAAAAAAATATCTATTTTGATGTTTTTTAAAACCTGTTATAGTAGGTTAAAATGGCTTGGTTAAAC TGTACACAAGTTTTTAAGTGATCATAATAAATTTTCCCGTACAATATATTGTTAGTACTAAAAGTTTTTGGCTTTGGTTT GAAGATTTTACAAAGATCTAATTGTTTCTTTATCATTTTTCTATTATGCAGATTACTCAAGTATACAAATTTTATGATGA ATGCCTAAGAAAGTGATTTTTCAACACCTTCATTAAGAGTTCCTATGGAGCAAACCATAACATGATTTTGTCATGAAATT TTTCAAAGGTGAAGAAGAGATGTATCTAAGGTGAATACAACCAACCACCAATAATACTTTTTTTTATAAGCACCATCAGT AATACATATAAGTAGGGGTGTTCATCGGTTCGGATCGATCCGATGAAACCGACGAACCGAACCGAACCAAAGCAATTGGA TTGGTTTTTTTTGTTATTTGGTTCAAAACCGATCCAAACCGATAAAAACCAATGAACATTGGTTCGGTTCATGGTTTGAA AAATTAAAAACCAATGAACCGATGAACCGAACCGATGACAAATATTTATTTACGAAATATTTAATATATATATATATGTA TTTATTAAAGTAATTTTTTGAAGAAATAATGTTCATGTTAGACTTTTTATGTTTGTTAGACTTATTATGTTTTTGTTTTC TATTATTAATTTGTAATAGTACTAATATCAAACACCAATTTAAG
CDS sequence (LotjaGi6g1v0353900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTGCTGCAACATCTGGTGCTGTGTTAAATGGCCTAGGATCTTCCTTCTTGTGTGGAGGAAATAGGAGCCAAAC CTTGCTGGCTTCTGCTGCTGGAGCCAAAGCTGGTGCTGCTGTTAGTCCTAAAAGACTTATTGTAGCTGCTGCTGCTGCTG CACCAAAGAAGTCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCT GGTGACTTTGGTTTTGACCCACTAGGCCTAGGAAAGGACCCAGCGTTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCA TGGAAGGTGGGCAATGGCTGCAGTTTTGGGCATCTTTGTTGGCCAAGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAG CTGACCCCAATGCAATTGCTCCTTTCTCCTTTGGTTCTCTTCTGGGCACCCAGTTGATTCTCATGGGGTGGGTAGAGAGC AAGAGATGGGTGGACTTCTTCAACCCAGATTCTCAGTCGGTGGAATGGGCCACTCCATGGTCTAAGACTGCTGAGAATTT CGCCAATTACACCGGTGATCAAGGCTACCCAGGTGGCAAATTCTTCGATCCATTGGCCTTAGCTGGCACTCTCCAAGATG GAGTTTACATTCCAGACAAGGAGAAGCTGGAAAGATTGAAACTTGCTGAGATCAAGCATGCCAGGCTTGCAATGTTGGCC ATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTAGGCTTGTAA
Protein sequence (LotjaGi6g1v0353900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPAVKGGGNLVDPEWLDGSLP GDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVES KRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLA MLIFYFEAGQGKTPLGALGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 109 | 109 | - | – | |
| PANTHER | 3 | 260 | 258 | 4.4E-153 | ||
| PANTHER | 3 | 260 | 258 | 4.4E-153 | – | |
| SUPERFAMILY | 64 | 260 | 197 | 9.94E-44 | – | |
| Pfam | 72 | 248 | 177 | 2.2E-48 | ||
| Gene3D | 72 | 258 | 187 | 9.2E-59 | ||
| Phobius | 110 | 127 | 18 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| Phobius | 139 | 158 | 20 | - | – | |
| Phobius | 159 | 260 | 102 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0353900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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