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LotjaGi6g1v0354600.1

Overview

Field Value
Gene ID LotjaGi6g1v0354600
Transcript ID LotjaGi6g1v0354600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT2G13810.1 AGD2-like defense response protein 1; Swiss-Prot: sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1; TrEMBL-Plants: tr|W0BWR0|W0BWR0_LOTJA L,L-diaminopimelate aminotransferase; Found in the gene: LotjaGi6g1v0354600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66646383..66650704) extracted from Lotus japonicus Gifu genome v1.2.

GAAGATGGACCGGTTGAAATTGACATATGGGAACTCACTCACACTGATATGCTTGTTTAAGAGAATCTAGATATACTTTA ATACAGTTATTACTTATTAGTTTGTTGATTGGCCACCTGGTTATTTGTATAAAATTGTCATTGTGGATACATGCACAATC GCCCCTTGTCATCAGAACTAAAAACCAGAGCCTTAGAGAGTTTCTGGAGGCAGAACAGAAATCACTAAATCATGCATAAA ATGTACAACACATCAGTTTGCAGTTCTATGTTTAGTCCAAATGCTTTGCAATCTATCATGTTAGTGACAAGGCAACAACA GTACTGGATAATGTTAACTTATAGCAACAGACATCAGTTATCTTCTGTTTCCCCTTGCTTTTAACTATATGATAATTGAC TCTGGTATATAATTACAGGTCGTCATGCACATTGAAGAATCAAAGATTGAGAATTGGTATGCATATATAATTCATACTTG TTTGATTCAATTTTTCATTTTTATGGTTTTATTTTCTTTATGCCCTTGGCCTTAGACTTATCATTTGTGATTGTCATGTG CAGGACACCGCACGAAGGTACCCCGAAATGTAAACATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGGTGCTTTTC AATAATATTTCCACTTCTTGATTGTTTGTCTGAATCTTGTTTATCTCATGGAAATGCTGTTTTCAATTTTTATTTTTATT TACCATCTCAATTGAACAGATTGTGCACTAAGTTTCTTTTTACCATTAGTACATTGCTACAATGAAAAAACAAATTCTGG GGACCATTTGTACAGATTTTTCACTCCCTTGGTCCTTGTATATTCATTTTGTCATATGACATGCCTTACAATTTTAAGTT ATATGTGCTAAAAGCAAATTACTATCCTGATTGCTTCAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACA CGCAAATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATGTAA GTTACAAAGGTTCTTTCTGTTTGGTCATCACATTTTTTTCCCTATATGTTGGTCCCTATATTCACTTATGTGGATTTTGG TTCCTGCTGCTAAAGTATGGTCCTTATATTTTCCTTGCATTTGGGTTGCTAAGGAACCCTTAGTTATTTGTGATTTCTAG AACTAAAAATAAAGCTAAGTGAATGCTTTTAATTTTGGTTTATTGACAGATTTAGGTCCATCTTTTTCCTCTATTAACTT GAGGAAGGAGAAGAGGTAACTTGTTTGAGAAATTAATATATTTTTGCAGTTTGTGCATGGCCTTTCAACAGAAAAAGGTT ATAAAGGATATGGACCTGAGCAAGGTGAAAAGGTAACTTGTTTGTGAAATTAATATATTCTACTCTTTAAGATCCCAGAA ATAAAATGTCATATCAAATGTATAAACTTCTTTTTCTTGTTATGCATGATGTTGGCCCCAATATGATGCGATAGTAAAGT GCTTCTGTATTGAAGTATATGCTAGTATCAACCTTGAGTCTGCAATATCTTTATCTACTTACTTCAACTTCCACTTATGG CATAGGAGATCAATGTACCATATGCCATTCAATTAAAATGTATATATTCTGGCAAAATGAAATTGCAGGCCTTGAGGAAA GAAATTGCTGACACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATAT TTCTCGTCTTCAGGTATTCCATAAAATCATAATCACAGTTGTTTGTTGCACTCTACTTTATTCTTTTTCCCTTTTCAAAT TCTTAGCAACTTTTTACCATTTCTGTACTAATACTATTTCTGTGGAGAGTTAGTTACTTGGTGTCTCATAACACCTGTGA TAGTCTAATACCATTTCTATATTCTTCATATTTTGACGTTTTTCATATATCATCTTGGTACAGAACTAGGGATTGAGGGA CCAATTTCAGTAAAATTCCTATTATTGTTACTTTCTTGTGATTTAGTTCAATTAGTCTCATTCTCATTGTAAAGTAAGTA CCTTTGCTAAGTGCTTAAATTAATATGAAGTGCTGACTTTGATTTGTCTCAATACCTGCAGCTGCTTATGGGTCCCAATC TGAAGATATTTGTACCGGATCCATCCTTTCCGGTATTATAATTTCTACGAGATTCATCTATCTAATCAATGTGATCTGTT AGAAATATAATATAAAATCATTCATGTTTCTTCGCCCAACTGTTTTCATTTTGTTTTGTGTTTTAATAGTACAAAAAATA GTGATAACAGTGCCCTTAGCCTTCCATCTTTGCTTCTTCTATCTTTTCACTATAACGTGCGACTTGTTTCAATGTGATCT CCAAGTGAATGCATGCTTGCATCACATCATCAAACATATTGTTTTTGATGATCTTGAATTCTTCTGAGGCAGGCCTACAT AGATTCAAGTGTCATAATTGGCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACAT GTGGACCTCAAACCAACTTCTTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAAT CCCACTGGTCATGCGGCAACAAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTT TGACTCTGCATATTCTGCCTATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTATGTC TTGCTCGTTTATTTCGCTAAGTCCCATTTTGTTATTTTCATAAGCATCTTGTAAACCTTTTCTTTCAATCCAGATACAGG ATTTGCCAATTGGCACATGAATTATTTAGTTTCACTTTTTCAGGATGTTTGGATGGAGTGGTAAGTAGTTTGGGATTTGT TTTTGAAAGTTGAAACAATGCAGTTGGATGGTTAAGGAGGGAGACCCAAGCCACTCCATACTACTATCCCTTTTTTCATA ATCCCCAAATTTTGGAGAATGGAGCTTCTTTCTTTTTTAGTTGTCATTTACAAATTTCATTCCTAGTTCTCTAAACTCTT TTCACACCATTCTACACTTTGATTTTCCTTAGTTGCTCTAAACAAAAGTTTGACTGGTTTCCAAAATTTCCCTGCCTCCC TTGTGTTTTTTTTCCTGGTTAATCCTCGTATGTGGTCGATTAGTCTCACTACTTACAGGGCATTTTGTTTTGTTTCTTGC ATGCACTAATTCCACAATGGCAAGCTTAACCTCTTCCATTCTTCATTATGCTTTAAGGTTGCAATTGAAGTCTCGTCCTT CTCAAAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCC CTGTTGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCA TGCCTTTCTCCCGAGGGTCTCAAGGTAAAATTCAAATTCCCTAAGAATCCATTTAACTTGCCAAATTCCTGCTTTCAAGT CTCATCTCTAGTTTAGTTCCTAGACTAAACCCTATGAAAATTTTCTGGCATTGGTGTGATACTTGCTAAATATTATTTTG GAAAATCTCAGGCCGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTT GGTCTGAAAGTTTATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGC TGAAATTCTTGAGAAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTA GTGCTTTCGGCCAGAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAATAGGGGAAAACTAATGCT CTACTTCTTTCGTTTCCTGATCTATGCATAAAATAAAACAAAATGGCAAATCTCAGTTTTAACTACTTCTACTTGTAAGA GAATGCCTATGAATAATATATTTATTTATTGAACAATAACTATCTGTGGAGGAGGTTCCGGATATTGCTCTTCATATTGT GGCTCAGGACATTTTGGCTTTTATGCTTCCTGTGGCTTGATTTAATAAAATCCCATTTCAAAAACAAAGAACTATCTGTA AATCAAACTTTTACATTGATGATATTAGTCCCGTTCGAGGCCTTAAGTGAAAGTCATAGGACAAATGGTTTAACAAATGA GA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0354600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATAAAATGTACAACACATCAGTTTGCAGTTCTATGTTTAGTCCAAATGCTTTGCAATCTATCATGTCGTCATGCAC ATTGAAGAATCAAAGATTGAGAATTGGACACCGCACGAAGGTACCCCGAAATGTAAACATGGAGAAACTGCAACATGGCT ATTTATTTCCTGAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGCAAATGTGATAGATCTTGGAATT GGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATTTTGTGCATGGCCTTTCAACAGAAAAAGG TTATAAAGGATATGGACCTGAGCAAGGTGAAAAGGCCTTGAGGAAAGAAATTGCTGACACAATCTACAAAGATCTAGGGA TAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCTCGTCTTCAGCTGCTTATGGGTCCCAATCTG AAGATATTTGTACCGGATCCATCCTTTCCGGCCTACATAGATTCAAGTGTCATAATTGGCCAGGCTGGCGAATTTGTATA TGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGGACCTCAAACCAACTTCTTTCCTGATCTGCATACTGCTT CAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCACTGGTCATGCGGCAACAAGGAAGCAACTAGAGCAACTT GTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGACTCTGCATATTCTGCCTATATCACAGATGATAGTCCTAA ATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTTGCAATTGAAGTCTCGTCCTTCTCAAAATTTGCTGGCTTCACAGGCG TACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGTTGTGCATGATTTCAACCGCATA ATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCCTTTCTCCCGAGGGTCTCAAGGC CGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTTGGTCTGAAAGTTT ATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGCTGAAATTCTTGAG AAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTAGTGCTTTCGGCCA GAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0354600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHKMYNTSVCSSMFSPNALQSIMSSCTLKNQRLRIGHRTKVPRNVNMEKLQHGYLFPEIQRHQLMHLEKYPHANVIDLGI GDTTEPLSTIVTSSMVDFVHGLSTEKGYKGYGPEQGEKALRKEIADTIYKDLGIKPSEVFVSDGAQCDISRLQLLMGPNL KIFVPDPSFPAYIDSSVIIGQAGEFVYETGKYKNIEYMTCGPQTNFFPDLHTASRADIIFFCSPNNPTGHAATRKQLEQL VDFAKENGSIIIFDSAYSAYITDDSPKSIFEISGAREVAIEVSSFSKFAGFTGVRLGWTVVPEELSYSNGFPVVHDFNRI MCTCFNGASNIAQAGGLACLSPEGLKAVQSHVDNYMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILE KTHMITVPGSGFGPGGEEYIRISAFGQRDSIIEASERFQCLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51257
1 26 26 5.0 –
PANTHER
PTHR43144:SF5
31 440 410 2.0E-231 –
PANTHER
PTHR43144
31 440 410 2.0E-231
IPR019942
TIGRFAM
TIGR03542
43 439 397 7.1E-154
IPR019942
SUPERFAMILY
SSF53383
54 438 385 5.05E-72
IPR015424
Gene3D
G3DSA:3.90.1150.10
58 437 380 6.3E-137
IPR015422
Pfam
PF00155
74 424 351 2.3E-41
IPR004839
CDD
cd00609
76 439 364 3.97355E-77 –
Gene3D
G3DSA:3.40.640.10
85 340 256 6.3E-137
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0354600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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