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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0355400 |
| Transcript ID | LotjaGi6g1v0355400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7GTW2|A0A1J7GTW2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66730463..66732623) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTCCAAGTTCAATCAGAAGAGCCCTTGGGGCAGTGAAAGATCAAACAAGCATAGGCCTAGCCAAGGTGGGAAGCAG CACCTCACTTGCTGACCTTGATGTGGCCATTGTGAAGGCCACGAGGCACGACGAATACCCAGCTGAAGAAAAGTACATAA GGGAGATTCTCAGCTTAACAAGTTACTCAAGAGCATTCATCAGCTCATGTGTTAATACCCTCTCAAGGCGTCTGAGCAAG ACAAAAAGCTGGACAGTGGCTTTGAAAACTCTTGTGTTGATTCAAAGGCTGTTGGCAGAGGGTGATCCTGCATATGAGCA GGAGATATTCTTCTCAACTCGACGCGGGACTCGCCTCCTCAACATGTCTGATTTTCGTGACAACTCTAAAACTGGTGCAT GGGACTTCTCTGCATTTGTGCGCACGTATTCTTTGTATCTAGACGAAAGGCTCGAGTACAAGATGCAAAGCCGGCGTGGA AAACGTGGCGTGGTTGCTTATGATGAAGATGATGAGGAAAGAGATAGAGAAAAAGAAAGAGAAAACAAGGAGAAAGAAAT CGTTATAAGATCCACTCCAGTGCGTGACATGAAGTTAGAGCAAATATTTTCCAAAATGCAGCATTTGCAGTTGCTGCTTG AGCGCTTTCTAGCTTGCCGTCCTACAGGTTTGTAATCATTATACCAGAAAATTTGCCTTATAAATAACATGTTTGGATTA TCTTATTTTTCCTCAGAATCAATTCTAGCTTCTAGAAGCTACTCCCATAAGTTCTCATCAAAATTGATTTTGGCTATAAA AGCAATTGTACATGAATTTCCAAACATGCTACAAAATATCTTCTTCACTGAAATTGCACCATATCTTCTATATCATCTTG ATTAAACATGTTTATCTCATCATATACACTGAAGTTCATATGCATTTCAGTTCACATTCTTAAGTTAAAGATGCTTCTAC ACATTCTTTAGCATACATTATATGCATAAAAAGCAATTTCATCGATGTTATATATTTCAATGCAACAGGGGGAGCAAAGA ACCATCGGATTGTGATAGTGGCTCTTTACCCGGTTGTGAAGGAGAGTTTTCTAACATATTATGAAATATCAGAAATATTG AGTACCTTAATTGACCGTTTCCCTGACATGGAGGTCTCAGACTGTGTTAAGGTGTATGACATCTTTTGCCGTGTTGGGAA GCAGTACGACGAACTAGACCTCTTCTATGGATGGTCCAAGGGTATTGGAATCGCGCGCTCTTCTGAGTATCCAGAGATTG AAAAGGTCACGCCAAAGAAGCTAGAGGTGATGGAAGAGTTCATCAAAGACAAGTCCATATTAGCACAAAACAAGAAAGCC GGTGAACAAGAGGAGGAGAATAAAGAAGAGGAAGAAGCTACGGAACCGGAACCTGAACCGGAAGAGGATATGAACGCAAT CAAGGCACTGCCAGCACCAGAGGAAGAGCCAGAAGAAGAAGTGGAGGAAGAGCCGGTGGAAGAAGAGGTAAAAGAGGAAA AAGTGGTGCAGACAGAAGGTGACTTGTTGAATTTAGGAGACGATAACGTGACAAGTGAGGAACACGGAGATAAACTAGCC TTGGCTTTGTTTGATGGAGCAGCACCATCAACAGGTGAAACAAAAGCACTTCCATGGCATGCTTTTGATGAAAGTGCAGA TTGGGAAACAGCACTGGTGCAATCAGCAAGCAACTTAACAAACCAGAAACCTGCATTAGGGGGTGGGTTTGATACATTGT TGTTGGATGGAATGTATAAACAAGCAGAAGTGAGTTCAGCCATGCAAGGAGCAGCGGGGTATGGGGTGAGTGGAAGTGCA AGCAGTGTGGCGCTTGGTTCAGCTGGAAGGCCTGCAATGCTAGCATTGCCAGCACCACCAACATCAGGAAGTGACTCAAC AAGTTCATCAGGGAACTATGTGGATCCATTTGCAGCTTCATTGGCTGTTGCACCTCCACCTTATGTGCAGATGTCAGAGA TGGAGAAGAAACAGAGGTTGTTAGTTGAAGAACAGCTCATGTGGCAGCAATACTCAAAGGATCGCATGCAAGGATCGCAA CAATACTCACAGCAACAACAACCTGGTAATAATTCTTACACTGGAGGGCATCCACAGAACTATGGCAATTATTATCGTTG A
CDS sequence (LotjaGi6g1v0355400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCCAAGTTCAATCAGAAGAGCCCTTGGGGCAGTGAAAGATCAAACAAGCATAGGCCTAGCCAAGGTGGGAAGCAG CACCTCACTTGCTGACCTTGATGTGGCCATTGTGAAGGCCACGAGGCACGACGAATACCCAGCTGAAGAAAAGTACATAA GGGAGATTCTCAGCTTAACAAGTTACTCAAGAGCATTCATCAGCTCATGTGTTAATACCCTCTCAAGGCGTCTGAGCAAG ACAAAAAGCTGGACAGTGGCTTTGAAAACTCTTGTGTTGATTCAAAGGCTGTTGGCAGAGGGTGATCCTGCATATGAGCA GGAGATATTCTTCTCAACTCGACGCGGGACTCGCCTCCTCAACATGTCTGATTTTCGTGACAACTCTAAAACTGGTGCAT GGGACTTCTCTGCATTTGTGCGCACGTATTCTTTGTATCTAGACGAAAGGCTCGAGTACAAGATGCAAAGCCGGCGTGGA AAACGTGGCGTGGTTGCTTATGATGAAGATGATGAGGAAAGAGATAGAGAAAAAGAAAGAGAAAACAAGGAGAAAGAAAT CGTTATAAGATCCACTCCAGTGCGTGACATGAAGTTAGAGCAAATATTTTCCAAAATGCAGCATTTGCAGTTGCTGCTTG AGCGCTTTCTAGCTTGCCGTCCTACAGGGGGAGCAAAGAACCATCGGATTGTGATAGTGGCTCTTTACCCGGTTGTGAAG GAGAGTTTTCTAACATATTATGAAATATCAGAAATATTGAGTACCTTAATTGACCGTTTCCCTGACATGGAGGTCTCAGA CTGTGTTAAGGTGTATGACATCTTTTGCCGTGTTGGGAAGCAGTACGACGAACTAGACCTCTTCTATGGATGGTCCAAGG GTATTGGAATCGCGCGCTCTTCTGAGTATCCAGAGATTGAAAAGGTCACGCCAAAGAAGCTAGAGGTGATGGAAGAGTTC ATCAAAGACAAGTCCATATTAGCACAAAACAAGAAAGCCGGTGAACAAGAGGAGGAGAATAAAGAAGAGGAAGAAGCTAC GGAACCGGAACCTGAACCGGAAGAGGATATGAACGCAATCAAGGCACTGCCAGCACCAGAGGAAGAGCCAGAAGAAGAAG TGGAGGAAGAGCCGGTGGAAGAAGAGGTAAAAGAGGAAAAAGTGGTGCAGACAGAAGGTGACTTGTTGAATTTAGGAGAC GATAACGTGACAAGTGAGGAACACGGAGATAAACTAGCCTTGGCTTTGTTTGATGGAGCAGCACCATCAACAGGTGAAAC AAAAGCACTTCCATGGCATGCTTTTGATGAAAGTGCAGATTGGGAAACAGCACTGGTGCAATCAGCAAGCAACTTAACAA ACCAGAAACCTGCATTAGGGGGTGGGTTTGATACATTGTTGTTGGATGGAATGTATAAACAAGCAGAAGTGAGTTCAGCC ATGCAAGGAGCAGCGGGGTATGGGGTGAGTGGAAGTGCAAGCAGTGTGGCGCTTGGTTCAGCTGGAAGGCCTGCAATGCT AGCATTGCCAGCACCACCAACATCAGGAAGTGACTCAACAAGTTCATCAGGGAACTATGTGGATCCATTTGCAGCTTCAT TGGCTGTTGCACCTCCACCTTATGTGCAGATGTCAGAGATGGAGAAGAAACAGAGGTTGTTAGTTGAAGAACAGCTCATG TGGCAGCAATACTCAAAGGATCGCATGCAAGGATCGCAACAATACTCACAGCAACAACAACCTGGTAATAATTCTTACAC TGGAGGGCATCCACAGAACTATGGCAATTATTATCGTTGA
Protein sequence (LotjaGi6g1v0355400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPSSIRRALGAVKDQTSIGLAKVGSSTSLADLDVAIVKATRHDEYPAEEKYIREILSLTSYSRAFISSCVNTLSRRLSK TKSWTVALKTLVLIQRLLAEGDPAYEQEIFFSTRRGTRLLNMSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRG KRGVVAYDEDDEERDREKERENKEKEIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTGGAKNHRIVIVALYPVVK ESFLTYYEISEILSTLIDRFPDMEVSDCVKVYDIFCRVGKQYDELDLFYGWSKGIGIARSSEYPEIEKVTPKKLEVMEEF IKDKSILAQNKKAGEQEEENKEEEEATEPEPEPEEDMNAIKALPAPEEEPEEEVEEEPVEEEVKEEKVVQTEGDLLNLGD DNVTSEEHGDKLALALFDGAAPSTGETKALPWHAFDESADWETALVQSASNLTNQKPALGGGFDTLLLDGMYKQAEVSSA MQGAAGYGVSGSASSVALGSAGRPAMLALPAPPTSGSDSTSSSGNYVDPFAASLAVAPPPYVQMSEMEKKQRLLVEEQLM WQQYSKDRMQGSQQYSQQQQPGNNSYTGGHPQNYGNYYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 598 | 598 | 1.9E-294 | – | |
| PANTHER | 1 | 598 | 598 | 1.9E-294 | – | |
| Gene3D | 3 | 157 | 155 | 8.5E-43 | ||
| ProSiteProfiles | 25 | 161 | 137 | 34.51 | ||
| SMART | 31 | 161 | 131 | 1.2E-43 | ||
| Pfam | 32 | 323 | 292 | 1.4E-90 | ||
| SUPERFAMILY | 32 | 153 | 122 | 1.45E-30 | ||
| CDD | 33 | 152 | 120 | 3.33008E-63 | – | |
| Gene3D | 189 | 333 | 145 | 8.6E-30 | ||
| SUPERFAMILY | 193 | 323 | 131 | 7.85E-34 | – | |
| Coils | 326 | 347 | 22 | - | – | |
| MobiDBLite | 327 | 399 | 73 | - | – | |
| MobiDBLite | 339 | 353 | 15 | - | – | |
| MobiDBLite | 368 | 382 | 15 | - | – | |
| MobiDBLite | 565 | 599 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
| Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
| Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
| Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi6g1v0355400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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