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LotjaGi6g1v0361500.1

Overview

Field Value
Gene ID LotjaGi6g1v0361500
Transcript ID LotjaGi6g1v0361500.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT1G22020.1 serine hydroxymethyltransferase 6; Swiss-Prot: sp|Q9LM59|GLYC6_ARATH Serine hydroxymethyltransferase 6; TrEMBL-Plants: tr|G7IPE1|G7IPE1_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0361500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:67358425..67363820) extracted from Lotus japonicus Gifu genome v1.2.

ATGAATTATAAGAAAAATCAATCTGTCGTCTAAACAGGTATACAAAACACACGAGAGGAGCAGCGTCCAGGTGCATCCCC CCCCAATTCACTTCATCAAACCCCGAATCCTCTTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGTTAGGGTTTTC TATTTCCCCATTTCCTTCAGCAGATTTTCAATGACCGTGCACTGCAACACACAATTCACATCCAACACCACCACCTTCTG CAATCCCTGTTGTTATTGTTGTTCCTAGAAGGCAGCATCAACCACGAATCGGATTCAGTTTCTCGATTCTTCTCATCTCA TGGTCATGGACTTCTCTCACCATCAAGCCAACCTCTCTCTCGGTTTCTCCTCTGCTCACGCCTCACCGCCGCGCCGTCCC CAGATTCCCGACGACTCCATCACCCTCCACCTCGAATCCAGCCTCCGCGACCCCTCTCACCCGGTCCCTTCGGTTCCACT CCAGCTCCTAGAACCGCAGACAGAGAACGGGAATTCCGAGGTCGAATTGAACAACAACAACAACGATGAAGAAGACAGGG AGGTCGAGGAATTTCGCATCCTTGGCCACTCCATGTGTTTGAAGAGGCGAAGGGATTGCGAATCCTCCTCTTCCTCATCC ACCAAGAGGGTCTCTCTCGATCCCGATCTCGAGGCGCGGAGGGCCGCCGTTCGCTCGTGGGGTGGCCAAACCCTCGCCGT GGCGGACCCTGATGTATACGACATCATGGAGAAGGAGAAGAAGCGTCAATTCAGGGGGATTGAGCTCATAGCTTCCGAGA ATTTCGTGTGTAGGGCGGTGATGGAAGCGCTTGGAAGCCATTTGACGAATAAATACTCAGAGGGCATGCCCGGTGCGCGC TACTATGGAGGGAATCAGTATATAGATGAAATCGAAAATCTGTGCTGTGAACGTGCTCTGGCTGCGTTCAATTTGGATCC TAAGTGCTGGGGTGTGAATGTGCAGCCTTATTCCTGCACCTCTGCGAATTTTGCTGTCTACACCGGATTGTTATCGCCCG GTGATCGTATCATGGGGTTGGATACCCCATCGGGAGGGAACACTAGTCACGGGTACTATACACCCAATGGGAAGAAAGTT TCTGCGTCGTCCATATTCTTTGAGAGCTTACCCTACAAGGTGAACCCTCAATCAGGGTATGTTGATTATGATAAACTTGA GGAAAGGGCCCTTGATTTTCGTCCCAAGATACTCATTTGTGGTGGGAGCTCGTATCCCCGCGAATGGGATTACGCTAGGT TTAGGCACATTGCTGATAAATGTGGTGCTGTTTTATTGTGTGACATGGCCCAGATTAGTGGCCTAATTGCTGCCAAGGTC AGAAATATCCTTCCTCTTTTCCCCTTTATTGTGTCATTCATATTTAGTTCATAACTTGCACTGGACCTTCATTGCTGTTA TTGATTATGTTACTTTCACAGACAGTGTATGTATGGAGTACCAAGTTTTGTTACCAAAATGTTACTAACCAGAAAGGATT TGTGAGTTGTGACCGTGCAAGTCCTACTTTTAAGTTTGTTATTAGTTATGACTCCCTTAATTTGTTACTAGGGTACTAGT TCTGGTCTTCCAGCGTTGATTCCCTTAACTTTCCTTTTCAAAGGTAGTTATGTTATTTCTTGTCTGCCTGGCATGCCTAT TCCCGAAATTCAGCATAAGATTTAACAGGATTTTTCTTCATTGCACCAATACAGAAAGCTTGTTAAGGTTTCCATTTGAA TTACTACCAGAGACCCTATATAGTTTATACATTTAGATCATGGAATGTGAGAGTTCTACTTAGTTTTGAGAAGTGAAATT CACTGCTCATCTGAATAAATTTTTTTGCTTATTGATTTTAATGTCTTTTTGCACATTTAACTTAATATTAGGTCGTATTA TTGTAGATATGGATAGGTCCAGTGTAAGTATATTGTTGTTTCGTGCACAAATATCTAATGATTGGTTCAGCTTCAATCTT GAAGTAATACTCTTCATTTTCTTTAATCGTATGGTTTTATTGATCTTGCAGGAGTGTTCAAGCCCCTTTGATTATTGTGA TGTTGTTACTTCAACAACTCACAAGAGTCTTCGAGGTCCTAGGGGAGGCATAATTTTCTATCGGAAGGGTACAAAACCGA GGAAGAGAGGGATACTTTTAAGTCAAGGAAATGAAAGTGATCAATATGACTTCGAAGAAAAGATAAATTTTTCTGTTTTT CCGTCATTGCAAGGTGGTCCGCACAATAACCATATTGCTGCACTTGCTATAGCATTAAAACAAGTGGCTACTCCCGAATA TAAGGCATACATGCAGCAGGTGAAGAAGAATGCTCAAGCTTTAGCAACTGCCTTATTGAGAAAAAATTGCCGCCTAGTAA CTGGGGGTACAGACAACCATTTATTACTGTGGGATTTAAGTCCCCTGGGCTTGTCAGGTATTATATGACTGTCTCATATT TTTATGACACATAGCTAATTGCTTATTTATTGTTCAGTGCTTACGTGTCAGCTAGACTTAACCAATTTGTATGTTTTCTG CACTTTGCCTTACCTTTGAGTTTAAGAGGAACTCTGTAGTCTCAAATTAGGCTTTATTCTTGTGATTCTAGCTGGGACTT TGGGTTTTTTATTATTGTATACGTAACAAGCTCTAAGCCTTTTTTTTGGGTGGTTGTAGGTAAATTTTTTGAGAAGATCT GCGAGATATGTCATATCACTTTGAATAAAATTGCCATCTTTGGTGAGAATGGGACTATAATTCCCGGAGGTGTAAGAATA GGTAAGTGATGGTTTATTGTGCTTGAATCTTTTATGTTTTGTATGCTTGAGTTATTTGATTGGATGTACATTCTTATGAG AAATTTTTTTATGTTGTATTACAACTAAGGTACGCCTGCCATGACTTCAAGAGGGTGTCTGGAGCCTGATTTTGAGACCA TGGCTGAATTTCTCTTTAGAGCTGTACAAATTGCGAGTAAGCAAAGGGAGCATGGTAAATTCCAGAGTTTGAAGGGACTT GAAAGCAATAGGGACATTCTTGAGCTACGGTCACGGGTTGAAAGTTTTGCAACTCAGTTTGCAATGCCAGGTTTTGACAT TTGAGCATGATGTAACTGGTGGGTTGGCATTATTCATTGTTTATGTGCCACACTGATGGGTTGTCATGCTGGCATATCTC AAAATGTGAGTCTTCTTGATGTGCATATTTTTTGTGGAGCTTCTCTCCTCTCTGCATCGTACACAGTTTGCCAGGCTTTT GCCTGCTGCAGTGAATTGCAATGTGATTGATGGCAGTATGTAAATGTGAACTGCTGTTGAGGTTTCTTTTGGTAATCAAG CTTCCTGTTCATGCCTTGTCGAAGGGTGCACCTTCCATGCTGAATGCAGCAAATTGGCGATTATAGGGGTTGGAACAGGG ATCCTTGATCAGCCAACCTGAGTACAGAATTCTTCTCGTGACCTGCAAAAAATAATTGATTTGATGAAGGTTAGACTTAG ACACCTTGAATTCTTTTACTTGCTGTTTGATGTTGAAAGCAATGGTTATCCTATATTTCTTGCTATATTTATAGTATCCT TTTTGAAGATGATATTTGTACTCATTTTGATATAAAAAAATACACTGGCGAGTTAATTGTTTAATATACAGGTCAAAGTG GTAAATATGTGATTGCTTTGTACCCTTGTATAGCTTTTTAAGTCAATCATTTTCTCAAGTGATGAGGACATCCTTGCCTT TCAAAGTTCATGTGCCCCCACGTCCTCATCATCAAGTAAACTTGATGATTCTTTTATAGTGGGCATGAAACATTCTTCAG AAGTGCTTTCAAGTTCATGCAAACTCTATCAGTGGGGCATGTTTGATTGGCTCGGCACAAGGTACTTAGGGGCAATTGAG GGTATTTGCTGTTAAATACTCTGCCACTTTGACTTCCTCTCTTATTTTTCCATTTGGGGTTTGGATCGTTTTTTCCTGTT TAGAAATATGTGCGGATGTAACATGTTCTGATAGGAATTACATGTATATAGTTGGTTGGTCTAATGGGTTGTTGAAGTAA ATATGTGATTCTTGTATACGATTTAGAATCAAGAAATGAGAAATTACAATTGTTATATGGCACAAGATGAAGAATAGAAG AAATTGATATGGCGACTTCATCTCTTACGCTTAAGGTTTGATGTATATTATAAATACAAGTTGAAGCTCATGTCATTTAG CACCTCAAATGCTTAGTTAACTTGAACTTCATTTCATTAGCCAGGTTATTTTTTATCTGAGTTGTCTTCTCCTAGATGAA TTTCTTACTATTCATCCATTTCAATATCTTACGTCTTTTCAGTGAACCTATCATCAAAGTTTATTTCTGAACATCTATGA AATCTATTTAATGAATTTTGATGGAATGCACAACTTGGCAAAAGCTTAGCTATTTGAAGGTAAATGGAAAGAAAAAAAAA AGATCACCATAAACACATCTAATTGTATTTTACTCTTTTATAGAATGAATTACTTCTTTAAGTCATATTACTTGAGGATG AGCAAATTAAATTTGAGGGTTAATGGGCCGCTGACTCGTTAAGGATGTTAGGCCTTGTCTTTTCCAATGAGAAACATGCT CCATATATGAAAAACTTTTTTTTATATAAAATACTTTGATAACATAAATTCGAGTTCTATCTGTTTGCTTCAAGAATTAT ATGTAGAGCCTTGAAGTGGCCTCCTGTTTTGGGAGAGAAATATGGCTATTTTTGAAAATTGAAATTACAATAGGTATTAT ATACCAAAAAATTGAAAAATTGAACTAAATCAATTAAATATAACTTGTTCGATTTTTATTTTACCCTAAACCGAACCACC AACAAACCGAATTAACTCCACCTGTGAACACCCCTAACTACATGAATGAAGATGGAGTAAATCTCTTTTTCTTTTTCTTT CTATTAAACCAAAATCTTCATTTCTCAAACCCATAAACAAACATCACACCAATTCTGATGAGATCATGTATTATTTTCAT GACATAACATGTATTTAGAGGTTCCATTTTAAATCAAATATATCAAATTAAGTTCACATTGGAAATTAAAAATCCATTCT AAGGCTAGTTGGTGTTGGAAGAAACTAAAAGAAACCTACAAAGTTATGAAATAATATTTGTGCCTACCTGTATTAAGTTA TTAATCACTCTTACCAATATTAACGTATCATTTTGCTTTGGTTGAAGTTTTAAATTCTTTAGTTGCAAGATTAGGAATTT AGGATTCATCTTATTGCATGATGCTGTCTTATGAAAAGCGATTATGTCGACCATTCCCACTTATAGCAAGTGCCAAGGTG AGTTGAACACATTTTACAATTTTTAATGGAGTCACG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0361500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCATGGACTTCTCTCACCATCAAGCCAACCTCTCTCTCGGTTTCTCCTCTGCTCACGCCTCACCGCCGCGCCGTCC CCAGATTCCCGACGACTCCATCACCCTCCACCTCGAATCCAGCCTCCGCGACCCCTCTCACCCGGTCCCTTCGGTTCCAC TCCAGCTCCTAGAACCGCAGACAGAGAACGGGAATTCCGAGGTCGAATTGAACAACAACAACAACGATGAAGAAGACAGG GAGGTCGAGGAATTTCGCATCCTTGGCCACTCCATGTGTTTGAAGAGGCGAAGGGATTGCGAATCCTCCTCTTCCTCATC CACCAAGAGGGTCTCTCTCGATCCCGATCTCGAGGCGCGGAGGGCCGCCGTTCGCTCGTGGGGTGGCCAAACCCTCGCCG TGGCGGACCCTGATGTATACGACATCATGGAGAAGGAGAAGAAGCGTCAATTCAGGGGGATTGAGCTCATAGCTTCCGAG AATTTCGTGTGTAGGGCGGTGATGGAAGCGCTTGGAAGCCATTTGACGAATAAATACTCAGAGGGCATGCCCGGTGCGCG CTACTATGGAGGGAATCAGTATATAGATGAAATCGAAAATCTGTGCTGTGAACGTGCTCTGGCTGCGTTCAATTTGGATC CTAAGTGCTGGGGTGTGAATGTGCAGCCTTATTCCTGCACCTCTGCGAATTTTGCTGTCTACACCGGATTGTTATCGCCC GGTGATCGTATCATGGGGTTGGATACCCCATCGGGAGGGAACACTAGTCACGGGTACTATACACCCAATGGGAAGAAAGT TTCTGCGTCGTCCATATTCTTTGAGAGCTTACCCTACAAGGTGAACCCTCAATCAGGGTATGTTGATTATGATAAACTTG AGGAAAGGGCCCTTGATTTTCGTCCCAAGATACTCATTTGTGGTGGGAGCTCGTATCCCCGCGAATGGGATTACGCTAGG TTTAGGCACATTGCTGATAAATGTGGTGCTGTTTTATTGTGTGACATGGCCCAGATTAGTGGCCTAATTGCTGCCAAGGA GTGTTCAAGCCCCTTTGATTATTGTGATGTTGTTACTTCAACAACTCACAAGAGTCTTCGAGGTCCTAGGGGAGGCATAA TTTTCTATCGGAAGGGTACAAAACCGAGGAAGAGAGGGATACTTTTAAGTCAAGGAAATGAAAGTGATCAATATGACTTC GAAGAAAAGATAAATTTTTCTGTTTTTCCGTCATTGCAAGGTGGTCCGCACAATAACCATATTGCTGCACTTGCTATAGC ATTAAAACAAGTGGCTACTCCCGAATATAAGGCATACATGCAGCAGGTGAAGAAGAATGCTCAAGCTTTAGCAACTGCCT TATTGAGAAAAAATTGCCGCCTAGTAACTGGGGGTACAGACAACCATTTATTACTGTGGGATTTAAGTCCCCTGGGCTTG TCAGGTAAATTTTTTGAGAAGATCTGCGAGATATGTCATATCACTTTGAATAAAATTGCCATCTTTGGTGAGAATGGGAC TATAATTCCCGGAGGTGTAAGAATAGGTACGCCTGCCATGACTTCAAGAGGGTGTCTGGAGCCTGATTTTGAGACCATGG CTGAATTTCTCTTTAGAGCTGTACAAATTGCGAGTAAGCAAAGGGAGCATGGTAAATTCCAGAGTTTGAAGGGACTTGAA AGCAATAGGGACATTCTTGAGCTACGGTCACGGGTTGAAAGTTTTGCAACTCAGTTTGCAATGCCAGGTTTTGACATTTG A
Download CDS Sequence

Protein sequence (LotjaGi6g1v0361500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVMDFSHHQANLSLGFSSAHASPPRRPQIPDDSITLHLESSLRDPSHPVPSVPLQLLEPQTENGNSEVELNNNNNDEEDR EVEEFRILGHSMCLKRRRDCESSSSSSTKRVSLDPDLEARRAAVRSWGGQTLAVADPDVYDIMEKEKKRQFRGIELIASE NFVCRAVMEALGSHLTNKYSEGMPGARYYGGNQYIDEIENLCCERALAAFNLDPKCWGVNVQPYSCTSANFAVYTGLLSP GDRIMGLDTPSGGNTSHGYYTPNGKKVSASSIFFESLPYKVNPQSGYVDYDKLEERALDFRPKILICGGSSYPREWDYAR FRHIADKCGAVLLCDMAQISGLIAAKECSSPFDYCDVVTSTTHKSLRGPRGGIIFYRKGTKPRKRGILLSQGNESDQYDF EEKINFSVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALATALLRKNCRLVTGGTDNHLLLWDLSPLGL SGKFFEKICEICHITLNKIAIFGENGTIIPGGVRIGTPAMTSRGCLEPDFETMAEFLFRAVQIASKQREHGKFQSLKGLE SNRDILELRSRVESFATQFAMPGFDI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11680:SF39
3 586 584 0.0 –
PANTHER
PTHR11680
3 586 584 0.0
IPR001085
MobiDBLite
mobidb-lite
58 77 20 - –
SUPERFAMILY
SSF53383
125 585 461 3.48E-166
IPR015424
Hamap
MF_00051
131 583 453 39.569
IPR001085
Pfam
PF00464
133 536 404 1.4E-168
IPR039429
Gene3D
G3DSA:3.90.1150.10
136 582 447 1.3E-199
IPR015422
CDD
cd00378
136 575 440 0.0
IPR001085
Gene3D
G3DSA:3.40.640.10
161 441 281 1.3E-199
IPR015421
ProSitePatterns
PS00096
356 372 17 -
IPR019798

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0361500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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