Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0361500 |
| Transcript ID | LotjaGi6g1v0361500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT1G22020.1 serine hydroxymethyltransferase 6; Swiss-Prot: sp|Q9LM59|GLYC6_ARATH Serine hydroxymethyltransferase 6; TrEMBL-Plants: tr|G7IPE1|G7IPE1_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0361500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67360697..67363495) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTTCTCTCACCATCAAGCCAACCTCTCTCTCGGTTTCTCCTCTGCTCACGCCTCACCGCCGCGCCGTCCCCAGAT TCCCGACGACTCCATCACCCTCCACCTCGAATCCAGCCTCCGCGACCCCTCTCACCCGGTCCCTTCGGTTCCACTCCAGC TCCTAGAACCGCAGACAGAGAACGGGAATTCCGAGGTCGAATTGAACAACAACAACAACGATGAAGAAGACAGGGAGGTC GAGGAATTTCGCATCCTTGGCCACTCCATGTGTTTGAAGAGGCGAAGGGATTGCGAATCCTCCTCTTCCTCATCCACCAA GAGGGTCTCTCTCGATCCCGATCTCGAGGCGCGGAGGGCCGCCGTTCGCTCGTGGGGTGGCCAAACCCTCGCCGTGGCGG ACCCTGATGTATACGACATCATGGAGAAGGAGAAGAAGCGTCAATTCAGGGGGATTGAGCTCATAGCTTCCGAGAATTTC GTGTGTAGGGCGGTGATGGAAGCGCTTGGAAGCCATTTGACGAATAAATACTCAGAGGGCATGCCCGGTGCGCGCTACTA TGGAGGGAATCAGTATATAGATGAAATCGAAAATCTGTGCTGTGAACGTGCTCTGGCTGCGTTCAATTTGGATCCTAAGT GCTGGGGTGTGAATGTGCAGCCTTATTCCTGCACCTCTGCGAATTTTGCTGTCTACACCGGATTGTTATCGCCCGGTGAT CGTATCATGGGGTTGGATACCCCATCGGGAGGGAACACTAGTCACGGGTACTATACACCCAATGGGAAGAAAGTTTCTGC GTCGTCCATATTCTTTGAGAGCTTACCCTACAAGGTGAACCCTCAATCAGGGTATGTTGATTATGATAAACTTGAGGAAA GGGCCCTTGATTTTCGTCCCAAGATACTCATTTGTGGTGGGAGCTCGTATCCCCGCGAATGGGATTACGCTAGGTTTAGG CACATTGCTGATAAATGTGGTGCTGTTTTATTGTGTGACATGGCCCAGATTAGTGGCCTAATTGCTGCCAAGGTCAGAAA TATCCTTCCTCTTTTCCCCTTTATTGTGTCATTCATATTTAGTTCATAACTTGCACTGGACCTTCATTGCTGTTATTGAT TATGTTACTTTCACAGACAGTGTATGTATGGAGTACCAAGTTTTGTTACCAAAATGTTACTAACCAGAAAGGATTTGTGA GTTGTGACCGTGCAAGTCCTACTTTTAAGTTTGTTATTAGTTATGACTCCCTTAATTTGTTACTAGGGTACTAGTTCTGG TCTTCCAGCGTTGATTCCCTTAACTTTCCTTTTCAAAGGTAGTTATGTTATTTCTTGTCTGCCTGGCATGCCTATTCCCG AAATTCAGCATAAGATTTAACAGGATTTTTCTTCATTGCACCAATACAGAAAGCTTGTTAAGGTTTCCATTTGAATTACT ACCAGAGACCCTATATAGTTTATACATTTAGATCATGGAATGTGAGAGTTCTACTTAGTTTTGAGAAGTGAAATTCACTG CTCATCTGAATAAATTTTTTTGCTTATTGATTTTAATGTCTTTTTGCACATTTAACTTAATATTAGGTCGTATTATTGTA GATATGGATAGGTCCAGTGTAAGTATATTGTTGTTTCGTGCACAAATATCTAATGATTGGTTCAGCTTCAATCTTGAAGT AATACTCTTCATTTTCTTTAATCGTATGGTTTTATTGATCTTGCAGGAGTGTTCAAGCCCCTTTGATTATTGTGATGTTG TTACTTCAACAACTCACAAGAGTCTTCGAGGTCCTAGGGGAGGCATAATTTTCTATCGGAAGGGTACAAAACCGAGGAAG AGAGGGATACTTTTAAGTCAAGGAAATGAAAGTGATCAATATGACTTCGAAGAAAAGATAAATTTTTCTGTTTTTCCGTC ATTGCAAGGTGGTCCGCACAATAACCATATTGCTGCACTTGCTATAGCATTAAAACAAGTGGCTACTCCCGAATATAAGG CATACATGCAGCAGGTGAAGAAGAATGCTCAAGCTTTAGCAACTGCCTTATTGAGAAAAAATTGCCGCCTAGTAACTGGG GGTACAGACAACCATTTATTACTGTGGGATTTAAGTCCCCTGGGCTTGTCAGGTATTATATGACTGTCTCATATTTTTAT GACACATAGCTAATTGCTTATTTATTGTTCAGTGCTTACGTGTCAGCTAGACTTAACCAATTTGTATGTTTTCTGCACTT TGCCTTACCTTTGAGTTTAAGAGGAACTCTGTAGTCTCAAATTAGGCTTTATTCTTGTGATTCTAGCTGGGACTTTGGGT TTTTTATTATTGTATACGTAACAAGCTCTAAGCCTTTTTTTTGGGTGGTTGTAGGTAAATTTTTTGAGAAGATCTGCGAG ATATGTCATATCACTTTGAATAAAATTGCCATCTTTGGTGAGAATGGGACTATAATTCCCGGAGGTGTAAGAATAGGTAA GTGATGGTTTATTGTGCTTGAATCTTTTATGTTTTGTATGCTTGAGTTATTTGATTGGATGTACATTCTTATGAGAAATT TTTTTATGTTGTATTACAACTAAGGTACGCCTGCCATGACTTCAAGAGGGTGTCTGGAGCCTGATTTTGAGACCATGGCT GAATTTCTCTTTAGAGCTGTACAAATTGCGAGTAAGCAAAGGGAGCATGGTAAATTCCAGAGTTTGAAGGGACTTGAAAG CAATAGGGACATTCTTGAGCTACGGTCACGGGTTGAAAGTTTTGCAACTCAGTTTGCAATGCCAGGTTTTGACATTTGA
CDS sequence (LotjaGi6g1v0361500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTCTCTCACCATCAAGCCAACCTCTCTCTCGGTTTCTCCTCTGCTCACGCCTCACCGCCGCCTCACCCGGTCCC TTCGGTTCCACTCCAGCTCCTAGAACCGCAGACAGAGAACGGGAATTCCGAGGTCGAATTGAACAACAACAACAACGATG AAGAAGACAGGGAGGTCGAGGAATTTCGCATCCTTGGCCACTCCATGTGTTTGAAGAGGCGAAGGGATTGCGAATCCTCC TCTTCCTCATCCACCAAGAGGGTCTCTCTCGATCCCGATCTCGAGGCGCGGAGGGCCGCCGTTCGCTCGTGGGGTGGCCA AACCCTCGCCGTGGCGGACCCTGATGTATACGACATCATGGAGAAGGAGAAGAAGCGTCAATTCAGGGGGATTGAGCTCA TAGCTTCCGAGAATTTCGTGTGTAGGGCGGTGATGGAAGCGCTTGGAAGCCATTTGACGAATAAATACTCAGAGGGCATG CCCGGTGCGCGCTACTATGGAGGGAATCAGTATATAGATGAAATCGAAAATCTGTGCTGTGAACGTGCTCTGGCTGCGTT CAATTTGGATCCTAAGTGCTGGGGTGTGAATGTGCAGCCTTATTCCTGCACCTCTGCGAATTTTGCTGTCTACACCGGAT TGTTATCGCCCGGTGATCGTATCATGGGGTTGGATACCCCATCGGGAGGGAACACTAGTCACGGGTACTATACACCCAAT GGGAAGAAAGTTTCTGCGTCGTCCATATTCTTTGAGAGCTTACCCTACAAGGTGAACCCTCAATCAGGGTATGTTGATTA TGATAAACTTGAGGAAAGGGCCCTTGATTTTCGTCCCAAGATACTCATTTGTGGTGGGAGCTCGTATCCCCGCGAATGGG ATTACGCTAGGTTTAGGCACATTGCTGATAAATGTGGTGCTGTTTTATTGTGTGACATGGCCCAGATTAGTGGCCTAATT GCTGCCAAGGAGTGTTCAAGCCCCTTTGATTATTGTGATGTTGTTACTTCAACAACTCACAAGAGTCTTCGAGGTCCTAG GGGAGGCATAATTTTCTATCGGAAGGGTACAAAACCGAGGAAGAGAGGGATACTTTTAAGTCAAGGAAATGAAAGTGATC AATATGACTTCGAAGAAAAGATAAATTTTTCTGTTTTTCCGTCATTGCAAGGTGGTCCGCACAATAACCATATTGCTGCA CTTGCTATAGCATTAAAACAAGTGGCTACTCCCGAATATAAGGCATACATGCAGCAGGTGAAGAAGAATGCTCAAGCTTT AGCAACTGCCTTATTGAGAAAAAATTGCCGCCTAGTAACTGGGGGTACAGACAACCATTTATTACTGTGGGATTTAAGTC CCCTGGGCTTGTCAGGTAAATTTTTTGAGAAGATCTGCGAGATATGTCATATCACTTTGAATAAAATTGCCATCTTTGGT GAGAATGGGACTATAATTCCCGGAGGTGTAAGAATAGGTACGCCTGCCATGACTTCAAGAGGGTGTCTGGAGCCTGATTT TGAGACCATGGCTGAATTTCTCTTTAGAGCTGTACAAATTGCGAGTAAGCAAAGGGAGCATGGTAAATTCCAGAGTTTGA AGGGACTTGAAAGCAATAGGGACATTCTTGAGCTACGGTCACGGGTTGAAAGTTTTGCAACTCAGTTTGCAATGCCAGGT TTTGACATTTGA
Protein sequence (LotjaGi6g1v0361500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFSHHQANLSLGFSSAHASPPPHPVPSVPLQLLEPQTENGNSEVELNNNNNDEEDREVEEFRILGHSMCLKRRRDCESS SSSSTKRVSLDPDLEARRAAVRSWGGQTLAVADPDVYDIMEKEKKRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGM PGARYYGGNQYIDEIENLCCERALAAFNLDPKCWGVNVQPYSCTSANFAVYTGLLSPGDRIMGLDTPSGGNTSHGYYTPN GKKVSASSIFFESLPYKVNPQSGYVDYDKLEERALDFRPKILICGGSSYPREWDYARFRHIADKCGAVLLCDMAQISGLI AAKECSSPFDYCDVVTSTTHKSLRGPRGGIIFYRKGTKPRKRGILLSQGNESDQYDFEEKINFSVFPSLQGGPHNNHIAA LAIALKQVATPEYKAYMQQVKKNAQALATALLRKNCRLVTGGTDNHLLLWDLSPLGLSGKFFEKICEICHITLNKIAIFG ENGTIIPGGVRIGTPAMTSRGCLEPDFETMAEFLFRAVQIASKQREHGKFQSLKGLESNRDILELRSRVESFATQFAMPG FDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 563 | 538 | 6.9E-303 | – | |
| PANTHER | 26 | 563 | 538 | 6.9E-303 | ||
| SUPERFAMILY | 102 | 562 | 461 | 3.02E-166 | ||
| Hamap | 108 | 560 | 453 | 39.569 | ||
| Pfam | 110 | 513 | 404 | 1.2E-168 | ||
| CDD | 113 | 552 | 440 | 0.0 | ||
| Gene3D | 113 | 559 | 447 | 1.2E-199 | ||
| Gene3D | 138 | 418 | 281 | 1.2E-199 | ||
| ProSitePatterns | 333 | 349 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi6g1v0361500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…